Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001972.1

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Forward (+)

81838 .. 83796

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001972.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atggttgctgcaaggactgccgaaggtagggaagccgagatggttttggaggtgctgcagattggtatgctggccgaaagggctgcagggaaggggcagcaggcagcgacgcaggggcatgtggctgcaggagcagctcgcagggcagcaggggctgcggtgcaaggttgcaggcgcactgacgagcgggctgcagcgaaggagcgcaggggcgcggggcgctgggcgcgcgaggggcaggctgcggtgatggttttgctagctcgggctaggtgctgcggtggtgaaaaggattttcagtgggagaggcagcaagaacagtggaagagattaagaacagaaaacggagtcgggacgatacgtgtttatggagtggctggatgtggcaagacaaaagttgtagctgaagtgaatgaccttgtattaaatgactgcaaaaactgtgcctcagaagatgtcaataacagaaaagaaaatgaggtttttgataaagttatttctgtcaccgtagagaataatctgggatcaactgaagcatcaattgaaaatctgcagaagaaaattgccgagaagttacaagtggatcttaataactcaccggggagtagagcagacacattggggagggcactgaagaagttgaaatttctgatcattttggatgatatgtggacaaagttctctctcgaggcaattgggattccaaggccaaacaaagtaaatggatgcaagcttataattgtgtctagatcacttccggtctgcagtgacatccacattgataagaagtttgagattaaacttctatcaggtacagatgcagaagcattgttcgagactgaagctggcattaagttatcacaactaggggatgatactcgagccacagcaaagaacatgatagatgaacgtgatggttttcctttggcaattatcttgctggcacgagccttgagagaatcaaagaccgacgatactgaggatgttgatggtgaatggaaaaaagctttgacttggttgaaagaatctacagcccccttggaaagcatgaatgagagagcatttgcgcgtctgaaatatagctatgatatgttgaagaaagacgctcagcagtgtttcctttactgtgcattatacccagctggtcatgacattgaaaaaaaagagttggtggagtattggttctgggagggtttattggatggcagaaagagaagtgggcagatcgaagatatgaaacgagcaaaagagataatagatgagctgaatggagctcaccttctcgaaatagaaagtcaggaaggtggcaaagaatacatcaagatgagaaacttagttaggcacatggcagtccatcttaccaagatgagccctgatcagtttctcatcaaagcaagggagaagctttctgacttcccatcacaaggcgagtactggtctgaagtagagagagcctcattgatgagaaataagttcaaagcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

495

Amino Acids

55.44

Weight (kDa)

8.19

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	4 cut(s)	215, 229, 231, 1069
AciI	CCGC	5 cut(s)	158, 187, 215, 245, 279
AclWI	GGATC	2 cut(s)	532, 591
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	5 cut(s)	426, 552, 653, 861, 1461
AfaI	GTAC	2 cut(s)	814, 1433
AfiI	CCNNNNNNNGG	2 cut(s)	27, 1424
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	6 cut(s)	545, 643, 1021, 1096, 1157, 1477
AloI	GAACNNNNNNTCC	2 cut(s)	1166, 1198
Alw21I	GWGCWC	1 cut(s)	1276
Alw26I	GTCTC	1 cut(s)	830
AlwI	GGATC	2 cut(s)	532, 591
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	3 cut(s)	264, 686, 879
AoxI	GGCC	2 cut(s)	72, 707
ApoI	RAATTY	1 cut(s)	644
AspLEI	GCGC	7 cut(s)	177, 207, 215, 222, 229, 231, 1069
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	6 cut(s)	259, 296, 496, 588, 1004, 1268
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	3 cut(s)	264, 686, 879
BaeGI	GKGCMC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	1276, 1373
BauI	CACGAG	1 cut(s)	945
Bbv12I	GWGCWC	1 cut(s)	1276
BccI	CCATC	7 cut(s)	34, 244, 908, 983, 1196, 1362, 1426
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 173, 207
BclI	TGATCA	2 cut(s)	651, 1375
BcnI	CCSGG	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	830
BfaI	CTAG	4 cut(s)	260, 270, 747, 866
BfmI	CTRYAG	7 cut(s)	56, 84, 126, 192, 551, 763, 1029
BfoI	RGCGCY	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	80
BlpI	GCTNAGC	1 cut(s)	1107
BmcAI	AGTACT	1 cut(s)	1433
Bme1390I	CCNGG	1 cut(s)	600
BmeT110I	CYCGRG	3 cut(s)	264, 686, 879
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	3 cut(s)	545, 716, 808
BmtI	GCTAGC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	1439, 1471
Bpu1102I	GCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	1 cut(s)	973
BpuMI	CCSGG	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	599, 704, 1038
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 1424
Bse1I	ACTGG	1 cut(s)	1439
BseDI	CCNNGG	3 cut(s)	599, 704, 1038
BseGI	GGATG	7 cut(s)	386, 667, 731, 771, 877, 988, 1207
BseLI	CCNNNNNNNGG	2 cut(s)	27, 1424
BseMII	CTCAG	3 cut(s)	462, 969, 1121
BseNI	ACTGG	1 cut(s)	1439
BsePI	GCGCGC	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	631
BseYI	CCCAGC	2 cut(s)	222, 1138
Bsh1236I	CGCG	4 cut(s)	215, 229, 231, 1069
BshFI	GGCC	2 cut(s)	74, 709
BsiHKAI	GWGCWC	1 cut(s)	1276
BsiHKCI	CYCGRG	3 cut(s)	264, 686, 879
BsiSI	CCGG	2 cut(s)	599, 758
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	27, 1424
BsmAI	GTCTC	1 cut(s)	830
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	74, 709
BsoBI	CYCGRG	3 cut(s)	264, 686, 879
Bsp1286I	GDGCHC	3 cut(s)	631, 1276, 1373
Bsp143I	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
Bsp1720I	GCTNAGC	1 cut(s)	1107
BspACI	CCGC	5 cut(s)	158, 187, 215, 245, 279
BspANI	GGCC	2 cut(s)	74, 709
BspCNI	CTCAG	3 cut(s)	461, 970, 1120
BspFNI	CGCG	4 cut(s)	215, 229, 231, 1069
BspHI	TCATGA	1 cut(s)	1147
BspMAI	CTGCAG	6 cut(s)	60, 88, 130, 196, 555, 767
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	532, 591
BsrBI	CCGCTC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	1439
BssECI	CCNNGG	3 cut(s)	599, 704, 1038
BssHII	GCGCGC	1 cut(s)	227
BssMI	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
BssSI	CACGAG	1 cut(s)	945
BssT1I	CCWWGG	2 cut(s)	704, 1038
Bst2BI	CACGAG	1 cut(s)	945
Bst4CI	ACNGT	4 cut(s)	321, 443, 508, 1127
Bst6I	CTCTTC	1 cut(s)	320
BstAPI	GCANNNNNTGC	2 cut(s)	17, 155
BstBAI	YACGTR	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	448, 978, 1107, 1333
BstF5I	GGATG	7 cut(s)	386, 667, 731, 771, 877, 988, 1207
BstFNI	CGCG	4 cut(s)	215, 229, 231, 1069
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	7 cut(s)	177, 207, 215, 222, 229, 231, 1069
BstKTI	GATC	6 cut(s)	527, 586, 654, 752, 1227, 1378
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	7 cut(s)	56, 84, 126, 192, 551, 763, 1029
BstSLI	GKGCMC	1 cut(s)	631
BstUI	CGCG	4 cut(s)	215, 229, 231, 1069
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	74, 709
BtsCI	GGATG	7 cut(s)	386, 667, 731, 771, 877, 988, 1207
BtsI	GCAGTG	2 cut(s)	772, 1118
BtsIMutI	CAGTG	6 cut(s)	177, 305, 326, 629, 772, 1118
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	1 cut(s)	1147
CfoI	GCGC	7 cut(s)	177, 207, 215, 222, 229, 231, 1069
CseI	GACGC	3 cut(s)	118, 1058, 1112
Csp6I	GTAC	2 cut(s)	813, 1432
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	5 cut(s)	119, 898, 1048, 1148, 1345
CviQI	GTAC	2 cut(s)	813, 1432
DdeI	CTNAG	4 cut(s)	448, 978, 1107, 1333
DpnI	GATC	6 cut(s)	526, 585, 653, 751, 1226, 1377
DpnII	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	1274
Eco130I	CCWWGG	2 cut(s)	704, 1038
Eco24I	GRGCYC	2 cut(s)	1276, 1373
Eco53kI	GAGCTC	1 cut(s)	1274
Eco57I	CTGAAG	5 cut(s)	426, 552, 653, 861, 1461
Eco88I	CYCGRG	3 cut(s)	264, 686, 879
EcoICRI	GAGCTC	1 cut(s)	1274
EcoT14I	CCWWGG	2 cut(s)	704, 1038
EcoT38I	GRGCYC	2 cut(s)	1276, 1373
ErhI	CCWWGG	2 cut(s)	704, 1038
FaeI	CATG	5 cut(s)	122, 901, 1051, 1151, 1348
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	5 cut(s)	118, 897, 1047, 1147, 1344
FauI	CCCGC	2 cut(s)	180, 208
FbaI	TGATCA	2 cut(s)	651, 1375
FokI	GGATG	7 cut(s)	393, 674, 738, 758, 884, 995, 1214
FriOI	GRGCYC	2 cut(s)	1276, 1373
FspBI	CTAG	4 cut(s)	260, 270, 747, 866
GlaI	GCGC	7 cut(s)	176, 206, 214, 221, 228, 230, 1068
GsaI	CCCAGC	2 cut(s)	226, 1142
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	74, 709
HapII	CCGG	2 cut(s)	599, 758
HgaI	GACGC	3 cut(s)	118, 1058, 1112
HhaI	GCGC	7 cut(s)	177, 207, 215, 222, 229, 231, 1069
Hin1II	CATG	5 cut(s)	122, 901, 1051, 1151, 1348
Hin6I	GCGC	7 cut(s)	175, 205, 213, 220, 227, 229, 1067
HinP1I	GCGC	7 cut(s)	175, 205, 213, 220, 227, 229, 1067
HindIII	AAGCTT	3 cut(s)	731, 1005, 1403
HinfI	GANTC	4 cut(s)	348, 700, 959, 1025
HpaII	CCGG	2 cut(s)	599, 758
HphI	GGTGA	6 cut(s)	259, 296, 496, 588, 1004, 1268
Hpy166II	GTNNAC	1 cut(s)	672
Hpy188I	TCNGA	5 cut(s)	451, 651, 1074, 1411, 1441
Hpy188III	TCNNGA	8 cut(s)	352, 686, 747, 835, 1148, 1283, 1298, 1321
Hpy8I	GTNNAC	1 cut(s)	672
Hpy99I	CGWCG	2 cut(s)	112, 974
HpyAV	CCTTC	5 cut(s)	17, 85, 193, 1289, 1295
HpyCH4III	ACNGT	4 cut(s)	321, 443, 508, 1127
HpyCH4IV	ACGT	2 cut(s)	361, 910
HpyF3I	CTNAG	4 cut(s)	448, 978, 1107, 1333
HpySE526I	ACGT	2 cut(s)	361, 910
Hsp92II	CATG	5 cut(s)	122, 901, 1051, 1151, 1348
HspAI	GCGC	7 cut(s)	175, 205, 213, 220, 227, 229, 1067
Ksp22I	TGATCA	2 cut(s)	651, 1375
Kzo9I	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
LmnI	GCTCC	3 cut(s)	131, 202, 1271
LweI	GCATC	3 cut(s)	545, 716, 808
MaeI	CTAG	4 cut(s)	260, 270, 747, 866
MaeII	ACGT	2 cut(s)	361, 910
MaeIII	GTNAC	3 cut(s)	502, 573, 767
MalI	GATC	6 cut(s)	526, 585, 653, 751, 1226, 1377
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
MboII	GAAGA	6 cut(s)	337, 464, 568, 646, 1108, 1241
MfeI	CAATTG	2 cut(s)	540, 693
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	3 cut(s)	631, 1276, 1373
MluCI	AATT	6 cut(s)	540, 561, 644, 693, 738, 930
MlyI	GAGTC	1 cut(s)	357
MseI	TTAA	5 cut(s)	332, 425, 588, 798, 852
MslI	CAYNNNNRTG	1 cut(s)	1322
MspA1I	CMGCKG	1 cut(s)	1142
MspI	CCGG	2 cut(s)	599, 758
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	2 cut(s)	540, 693
MvnI	CGCG	4 cut(s)	215, 229, 231, 1069
NciI	CCSGG	1 cut(s)	600
NdeII	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	5 cut(s)	122, 901, 1051, 1151, 1348
NmeAIII	GCCGAG	2 cut(s)	61, 592
NmuCI	GTSAC	2 cut(s)	502, 767
NspI	RCATGY	1 cut(s)	122
PaeR7I	CTCGAG	2 cut(s)	686, 879
PagI	TCATGA	1 cut(s)	1147
PauI	GCGCGC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	700, 959, 1025
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	1276
PspFI	CCCAGC	2 cut(s)	222, 1138
PspXI	VCTCGAGB	1 cut(s)	879
PstI	CTGCAG	6 cut(s)	60, 88, 130, 196, 555, 767
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	583
PteI	GCGCGC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	1142
RsaI	GTAC	2 cut(s)	814, 1433
RsaNI	GTAC	2 cut(s)	813, 1432
RseI	CAYNNNNRTG	1 cut(s)	1322
SacI	GAGCTC	1 cut(s)	1276
SaqAI	TTAA	5 cut(s)	332, 425, 588, 798, 852
Sau3AI	GATC	6 cut(s)	524, 583, 651, 749, 1224, 1375
ScaI	AGTACT	1 cut(s)	1433
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	3 cut(s)	631, 1276, 1373
SfaNI	GCATC	3 cut(s)	545, 716, 808
SfcI	CTRYAG	7 cut(s)	56, 84, 126, 192, 551, 763, 1029
Sfr274I	CTCGAG	2 cut(s)	686, 879
SlaI	CTCGAG	2 cut(s)	686, 879
SmiMI	CAYNNNNRTG	1 cut(s)	1322
SmlI	CTYRAG	3 cut(s)	686, 879, 952
SmoI	CTYRAG	3 cut(s)	686, 879, 952
Sse9I	AATT	6 cut(s)	540, 561, 644, 693, 738, 930
SsiI	CCGC	5 cut(s)	158, 187, 215, 245, 279
SspMI	CTAG	4 cut(s)	260, 270, 747, 866
SstI	GAGCTC	1 cut(s)	1276
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	2 cut(s)	704, 1038
TaaI	ACNGT	4 cut(s)	321, 443, 508, 1127
TaiI	ACGT	2 cut(s)	364, 913
TaqI	TCGA	5 cut(s)	687, 834, 880, 1227, 1284
TaqII	GACCGA	1 cut(s)	983
TasI	AATT	6 cut(s)	540, 561, 644, 693, 738, 930
TatI	WGTACW	1 cut(s)	1431
TfiI	GAWTC	3 cut(s)	700, 959, 1025
Tru1I	TTAA	5 cut(s)	332, 425, 588, 798, 852
Tru9I	TTAA	5 cut(s)	332, 425, 588, 798, 852
TscAI	CASTG	6 cut(s)	184, 305, 326, 636, 772, 1118
TseFI	GTSAC	2 cut(s)	502, 767
Tsp45I	GTSAC	2 cut(s)	502, 767
TspDTI	ATGAA	3 cut(s)	921, 1064, 1250
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	6 cut(s)	184, 305, 326, 636, 772, 1118
XapI	RAATTY	1 cut(s)	644
XbaI	TCTAGA	1 cut(s)	746
XceI	RCATGY	1 cut(s)	122
XhoI	CTCGAG	2 cut(s)	686, 879
XspI	CTAG	4 cut(s)	260, 270, 747, 866
ZrmI	AGTACT	1 cut(s)	1433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.