Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Forward (+)

3995702 .. 3996703

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTGGTTTAGGCAAGTCGAATATTGTATCGCAAATTAATGATCTGATATTACATGAGGAAGATGTTGATGATAACACAGGAAATAGCCATTTTGATAAAGTTCTTTTTGTGACTGTAAAGAATGAGCTCGTATCAACTAAAGCATCCGTTGAGGATCTGCAGAAGCAGATTGCAGATAAATTACAAATTGATCTTCACAAGGAAAATGGAAGTAGTGCAGATGATGCATTGGCAAGTGCCTTGGCCAAGTTAAGATTTCTGATCATTTTGGATGATATGCAGACAGAACCGTCTCTTGAGGCAATCAGCATTCCAAGGCCAAGTGAAGAGAATCGCTGCAAGGTTATTATTGTATTCAGCTCACTTACAATGTGCAGCGACATCCACGTTGATGAAAAGTTTGAGATCAAACCTTTATCTGCTACAGAGGCACAAGAACTGTTTGAGAGTGAAGCTGGCATTAAATTGTCAAAGCTAGGGGATGATACTCAAGCCATTGCAAAGAAGATGATAGATGAATGTGATGGTTTTCCCGTCACAATTATCTTGCTGGTACCAATGTACAACTTCATACCTGTTGATCTAGAAAGACTGAGCCCTCTCAGGCTCTCAGCTGCCAATTTGGGTTCTAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

213

Amino Acids

23.46

Weight (kDa)

4.55

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 154	1.2e-18	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	1 cut(s)	556
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	246
AfaI	GTAC	2 cut(s)	558, 566
AluBI	AGCT	5 cut(s)	130, 363, 458, 478, 617
AluI	AGCT	5 cut(s)	130, 363, 458, 478, 617
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	246, 320
ApeKI	GCWGC	3 cut(s)	339, 378, 617
AseI	ATTAAT	1 cut(s)	39
Asp718I	GGTACC	1 cut(s)	556
BaeI	ACNNNNGTAYC	2 cut(s)	548, 581
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	556
BanII	GRGCYC	2 cut(s)	132, 602
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	326, 390, 604
BccI	CCATC	1 cut(s)	521
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	479, 587
BfmI	CTRYAG	2 cut(s)	161, 426
BisI	GCNGC	3 cut(s)	340, 379, 618
BlsI	GCNGC	3 cut(s)	341, 380, 619
BmiI	GGNNCC	1 cut(s)	558
BmsI	GCATC	2 cut(s)	155, 217
BpuEI	CTTGAG	2 cut(s)	320, 477
BsaJI	CCNNGG	2 cut(s)	243, 317
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	243, 317
BseGI	GGATG	4 cut(s)	146, 280, 384, 490
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	587, 619, 627
BseXI	GCAGC	3 cut(s)	326, 390, 604
BsgI	GTGCAG	2 cut(s)	240, 397
BshFI	GGCC	2 cut(s)	248, 322
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	248, 322
Bsp1286I	GDGCHC	2 cut(s)	132, 602
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
BspANI	GGCC	2 cut(s)	248, 322
BspCNI	CTCAG	3 cut(s)	588, 618, 626
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	564
BssECI	CCNNGG	2 cut(s)	243, 317
BssMI	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
BssT1I	CCWWGG	2 cut(s)	243, 317
Bst4CI	ACNGT	3 cut(s)	118, 294, 444
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	3 cut(s)	596, 605, 613
BstF5I	GGATG	4 cut(s)	146, 280, 384, 490
BstKTI	GATC	6 cut(s)	46, 160, 196, 267, 411, 586
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 431
BstSFI	CTRYAG	2 cut(s)	161, 426
BstV1I	GCAGC	3 cut(s)	326, 390, 604
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	248, 322
BtsCI	GGATG	4 cut(s)	146, 280, 384, 490
Cac8I	GCNNGC	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	557, 565
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	2 cut(s)	557, 565
DdeI	CTNAG	3 cut(s)	596, 605, 613
DpnI	GATC	6 cut(s)	45, 159, 195, 266, 410, 585
DpnII	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	243, 317
Eco24I	GRGCYC	2 cut(s)	132, 602
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	243, 317
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	132, 602
ErhI	CCWWGG	2 cut(s)	243, 317
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	59
FaiI	YATR	3 cut(s)	57, 281, 575
FatI	CATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	340, 379, 618
FokI	GGATG	4 cut(s)	133, 287, 371, 497
FriOI	GRGCYC	2 cut(s)	132, 602
Fsp4HI	GCNGC	3 cut(s)	340, 379, 618
FspBI	CTAG	2 cut(s)	479, 587
GluI	GCNGC	3 cut(s)	340, 379, 618
HaeIII	GGCC	2 cut(s)	248, 322
Hin1II	CATG	1 cut(s)	59
HinfI	GANTC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	48, 264
Hpy188III	TCNNGA	2 cut(s)	299, 587
HpyCH4III	ACNGT	3 cut(s)	118, 294, 444
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	8 cut(s)	163, 176, 221, 230, 283, 342, 378, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 431
HpyF3I	CTNAG	3 cut(s)	596, 605, 613
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
LpnPI	CCDG	5 cut(s)	66, 444, 539, 591, 592
Lsp1109I	GCAGC	3 cut(s)	326, 390, 604
LweI	GCATC	2 cut(s)	155, 217
MaeI	CTAG	2 cut(s)	479, 587
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	112, 538
MalI	GATC	6 cut(s)	45, 159, 195, 266, 410, 585
MboI	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
MboII	GAAGA	4 cut(s)	74, 188, 341, 520
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	132, 602
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	6 cut(s)	36, 182, 189, 467, 543, 622
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	5 cut(s)	52, 148, 295, 424, 612
Mox20I	TGGCCA	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	3 cut(s)	39, 254, 465
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	617
Mva1269I	GAATGC	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	227, 431
NdeII	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	112, 538
NsiI	ATGCAT	1 cut(s)	232
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	341, 380, 619
PshBI	ATTAAT	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	558, 566
RsaNI	GTAC	2 cut(s)	557, 565
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	39, 254, 465
SatI	GCNGC	3 cut(s)	340, 379, 618
Sau3AI	GATC	6 cut(s)	43, 157, 193, 264, 408, 583
SduI	GDGCHC	2 cut(s)	132, 602
SetI	ASST	9 cut(s)	132, 348, 365, 393, 418, 460, 480, 580, 619
SfaNI	GCATC	2 cut(s)	155, 217
SfcI	CTRYAG	2 cut(s)	161, 426
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	299, 492
SmoI	CTYRAG	2 cut(s)	299, 492
Sse9I	AATT	6 cut(s)	36, 182, 189, 467, 543, 622
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	479, 587
SstI	GAGCTC	1 cut(s)	132
StyI	CCWWGG	2 cut(s)	243, 317
TaaI	ACNGT	3 cut(s)	118, 294, 444
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	20
TasI	AATT	6 cut(s)	36, 182, 189, 467, 543, 622
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	39, 254, 465
Tru9I	TTAA	3 cut(s)	39, 254, 465
TseFI	GTSAC	2 cut(s)	112, 538
TseI	GCWGC	3 cut(s)	339, 378, 617
Tsp45I	GTSAC	2 cut(s)	112, 538
TspDTI	ATGAA	3 cut(s)	411, 534, 562
TspGWI	ACGGA	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	586
XspI	CTAG	2 cut(s)	479, 587
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.