Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

4381464 .. 4382630

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTAATGATAACTAATGAGTCAGGTTTTCTGTGGGAATCAACCAAAGGAGCATCTATAGATCAGCTGATATCACTCCAGAACTTTGCTATTCTTCATGTCAACTTCCTAAATGCAGCATCCTTGGACATGTATGTTGATAAGCATCACTGTCCGCCAAGTTTCAAATTCTGTGTTGGTGGTGCTTCTGCCAAGAACTTACCTGAAAACAGCATAGTTTTCAAGGGCATGTTGGGCAACCTTCCAAACCTTGAAATGGTTTTTGTCAAAAAATGTCAAAAGATGGTGGGTTTGATAGAGCCAGAAGAATCTGACAGTGAGATGCTGCACTACTTCCCCGAGCTCCTAGATATCTCCATCAAACGATGCCAGAGAATGGAAGTGGTAATAGAGTCGGAAGAGCCGAATGCAGAACCTTTGGAATTGTCCTGCCCTAAAGTTACCGATGATAACTTGTCTGCCTGCAGAACTGCTTCCAAGGATCACCCTCAGAACTCTGAGGATCGATTCCCGTGGCTGGAGTGGGGTCTTCTGAAGTGTTATCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

184

Amino Acids

20.74

Weight (kDa)

4.92

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	376
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	2 cut(s)	489, 510
AcsI	RAATTY	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	256, 376, 517
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	166, 223, 254
AluBI	AGCT	2 cut(s)	67, 343
AluI	AGCT	2 cut(s)	67, 343
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	489, 510
Ama87I	CYCGRG	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	116, 325
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	128, 312
BccI	CCATC	2 cut(s)	277, 365
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	57, 463
BisI	GCNGC	2 cut(s)	117, 326
BlsI	GCNGC	2 cut(s)	118, 327
BmeT110I	CYCGRG	1 cut(s)	338
BmsI	GCATC	5 cut(s)	62, 128, 154, 312, 356
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	2 cut(s)	62, 539
Bsa29I	ATCGAT	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	123, 477, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 376, 517
Bse8I	GATNNNNATC	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	3 cut(s)	123, 477, 512
BseGI	GGATG	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	256, 376, 517
BseMII	CTCAG	2 cut(s)	489, 503
BseXI	GCAGC	2 cut(s)	128, 312
BsgI	GTGCAG	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	256, 376, 517
BsmI	GAATGC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	61, 481, 502
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	490, 502
BspDI	ATCGAT	1 cut(s)	505
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	489, 510
BspQI	GCTCTTC	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	123, 477, 512
BssMI	GATC	3 cut(s)	61, 481, 502
BssT1I	CCWWGG	2 cut(s)	123, 477
Bst4CI	ACNGT	2 cut(s)	152, 317
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	2 cut(s)	489, 498
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	64, 484, 505
BstMBI	GATC	3 cut(s)	61, 481, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	133, 232
BstSFI	CTRYAG	2 cut(s)	57, 463
BstV1I	GCAGC	2 cut(s)	128, 312
BstV2I	GAAGAC	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	505
BsuTUI	ATCGAT	1 cut(s)	505
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	148, 322
Cac8I	GCNNGC	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	505
CviAII	CATG	3 cut(s)	98, 130, 229
CviJI	RGCY	5 cut(s)	67, 301, 343, 403, 517
CviKI_1	RGCY	5 cut(s)	67, 301, 343, 403, 517
DdeI	CTNAG	2 cut(s)	489, 498
DpnI	GATC	3 cut(s)	63, 483, 504
DpnII	GATC	3 cut(s)	61, 481, 502
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	2 cut(s)	123, 477
Eco24I	GRGCYC	1 cut(s)	345
Eco32I	GATATC	2 cut(s)	72, 352
Eco53kI	GAGCTC	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	343
EcoRV	GATATC	2 cut(s)	72, 352
EcoT14I	CCWWGG	2 cut(s)	123, 477
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	2 cut(s)	123, 477
FaeI	CATG	3 cut(s)	101, 133, 232
FaiI	YATR	6 cut(s)	59, 99, 131, 135, 215, 230
FatI	CATG	3 cut(s)	97, 129, 228
Fnu4HI	GCNGC	2 cut(s)	117, 326
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	117, 326
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	117, 326
GsuI	CTGGAG	2 cut(s)	62, 539
Hin1II	CATG	3 cut(s)	101, 133, 232
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	5 cut(s)	20, 38, 308, 392, 507
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	5 cut(s)	313, 397, 492, 499, 534
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	152, 317
HpyCH4V	TGCA	4 cut(s)	116, 328, 410, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	2 cut(s)	489, 498
Hsp92II	CATG	3 cut(s)	101, 133, 232
Kzo9I	GATC	3 cut(s)	61, 481, 502
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	50, 348
LpnPI	CCDG	8 cut(s)	9, 92, 216, 315, 383, 442, 475, 503
Lsp1109I	GCAGC	2 cut(s)	128, 312
LweI	GCATC	5 cut(s)	62, 128, 154, 312, 356
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	63, 483, 504
MboI	GATC	3 cut(s)	61, 481, 502
MboII	GAAGA	4 cut(s)	86, 317, 410, 521
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	167, 422
MlyI	GAGTC	2 cut(s)	29, 401
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	2 cut(s)	493, 498
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	3 cut(s)	61, 481, 502
NlaIII	CATG	3 cut(s)	101, 133, 232
NspI	RCATGY	2 cut(s)	133, 232
PciI	ACATGT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	38, 308, 507
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	118, 327
PleI	GAGTC	2 cut(s)	28, 400
PpsI	GAGTC	2 cut(s)	28, 400
PscI	ACATGT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	2 cut(s)	117, 326
Sau3AI	GATC	3 cut(s)	61, 481, 502
SchI	GAGTC	2 cut(s)	29, 401
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	7 cut(s)	28, 69, 205, 243, 252, 345, 418
SfaNI	GCATC	5 cut(s)	62, 128, 154, 312, 356
SfcI	CTRYAG	2 cut(s)	57, 463
Sse9I	AATT	2 cut(s)	167, 422
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	123, 477
TaaI	ACNGT	2 cut(s)	152, 317
TaqI	TCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	167, 422
TfiI	GAWTC	3 cut(s)	38, 308, 507
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	155, 322
TseI	GCWGC	2 cut(s)	116, 325
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	155, 322
Van91I	CCANNNNNTGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	2 cut(s)	133, 232
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.