RLG00000010123

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002553
Physical Location & Seq
Forward (+)
63241864 .. 63243155
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010123

Sequence Viewer

Length: 1071 bp
ATGAAGAAAATGACCAAACTTATTCGCCTAAACCTATCTCGCACCAATGTGAAGATATTTCCATCAAAGTTAGCACCTGCATTAGCACATCTAGAAGAACTGTTGATGATAATTAATGACTCAGGTTTTTATTGGGGATCAACCAAGGGAGCGCATATCAGCGAGCTGAGATCCTGCCAAAATTTAGCTATTCTCCTTGCCAACTTCCTAAATGCAGAAACATTTGTTAGCTATGTTGATAAGCATCTTTGTCCGCCCAGTTTCAGGTTCGGTGTGGGTGGCTCTTGTGAAGAAAAGTTACCTGAAAACAGCATAGTTTTCAAGGGTAACTTCCTTGTGAATGGAGAACCAGTCTCACTCCCAGAACACACATCTAAACTGCATGTCATAAGCAATGAGGATCTACCTTGCTTGCAAGTTAATTTTCATCTAAAGAACGTGAAGGTCATTAACATTTGTGACTGCAGATGTTTGGTTCATTTATTCACCATTGACATGTTGGGGAATCTTCCAAACCTTGAAACCATTTTAGTCGAGAAATGTCCAAAGATTGTGAGCTTGATAGAGCCAGAAGAATCTGATGGCATGATTAAACCTCGTCTGAAACACTTAAAGGTCATCCGTATCTTTGACAGCGAAAGTTTGGTCTTATTCAACAATGAGATGCTGCACTACTTCCTGGAGCTCGTAGAGATCTCCATCAAACGATGCCAGATGATAGAAGTTGTAATAGAGTCACAAGAGCCAAATGTCTACCCTGCAATTCTTCCAAAGTTACAGGAGTTGGTATTGGCTGATTTGCAAGAATTAAAATGCATCTATAATGGAGAAATGAAGTGGAACTCTCGCGAAACAATTTGGAACTATCCAGCTCTAATGATGCCAATAATAACTTCTCTGCTTGCAGAACTGCTTCACAGGCCAAGTGGGAGCAATCAACTACAAAGGAGTTATAGCTTAGATGGCAAGGAGACTATACTGCTGGACCTGATTAATATCAATGCAGCGGAAGCTCCTGAATCCGTTGGACCCAAATTTCGAAATGCTACAAAGGGATGGAGGAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

357

Amino Acids

40.43

Weight (kDa)

6.57

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 201 - 277 4.9e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 753
AccII CGCG 1 cut(s) 849
AciI CCGC 2 cut(s) 254, 1007
AclWI GGATC 3 cut(s) 145, 165, 408
AcsI RAATTY 2 cut(s) 181, 1034
AfiI CCNNNNNNNGG 1 cut(s) 264
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 3 cut(s) 322, 521, 655
AjnI CCWGG 1 cut(s) 678
AjuI GAANNNNNNNTTGG 2 cut(s) 877, 909
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 8 cut(s) 166, 188, 231, 558, 685, 872, 957, 1013
AluI AGCT 8 cut(s) 166, 188, 231, 558, 685, 872, 957, 1013
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 2 cut(s) 358, 965
AlwI GGATC 3 cut(s) 145, 165, 408
AoxI GGCC 1 cut(s) 920
ApeKI GCWGC 2 cut(s) 667, 1004
ApoI RAATTY 2 cut(s) 181, 1034
ArsI GACNNNNNNTTYG 4 cut(s) 630, 662, 1020, 1052
AseI ATTAAT 2 cut(s) 114, 993
Asp700I GAANNNNTTC 1 cut(s) 912
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 985, 1028
AsuHPI GGTGA 1 cut(s) 478
AsuII TTCGAA 1 cut(s) 1039
AvaII GGWCC 2 cut(s) 985, 1028
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 654, 1016
BccI CCATC 5 cut(s) 70, 575, 707, 956, 1050
BciT130I CCWGG 1 cut(s) 680
BcoDI GTCTC 2 cut(s) 358, 965
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 463
BfuAI ACCTGC 1 cut(s) 85
BglII AGATCT 1 cut(s) 693
BisI GCNGC 2 cut(s) 668, 1005
BlsI GCNGC 2 cut(s) 669, 1006
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 2 cut(s) 985, 1028
BmgT120I GGNCC 2 cut(s) 985, 1028
BmiI GGNNCC 1 cut(s) 1030
BmrFI CCNGG 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 5 cut(s) 253, 654, 698, 825, 870
BmuI ACTGGG 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 1039
BsaBI GATNNNNATC 3 cut(s) 243, 698, 995
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse1I ACTGG 2 cut(s) 258, 350
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 3 cut(s) 243, 698, 995
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 618, 1061
BseJI GATNNNNATC 3 cut(s) 243, 698, 995
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 135, 158
BseNI ACTGG 2 cut(s) 258, 350
BseXI GCAGC 2 cut(s) 654, 1016
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 849
BshFI GGCC 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 687
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 358, 965
BsnI GGCC 1 cut(s) 922
Bsp119I TTCGAA 1 cut(s) 1039
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 137, 170, 400, 693
Bsp68I TCGCGA 1 cut(s) 849
BspACI CCGC 2 cut(s) 254, 1007
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 2 cut(s) 134, 159
BspFNI CGCG 1 cut(s) 849
BspLI GGNNCC 1 cut(s) 1030
BspMAI CTGCAG 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 3 cut(s) 145, 165, 408
BspT104I TTCGAA 1 cut(s) 1039
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 2 cut(s) 258, 350
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 4 cut(s) 137, 170, 400, 693
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 1039
BstC8I GCNNGC 3 cut(s) 164, 413, 903
BstDEI CTNAG 3 cut(s) 121, 167, 958
BstF5I GGATG 2 cut(s) 618, 1061
BstFNI CGCG 1 cut(s) 849
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 4 cut(s) 140, 173, 403, 696
BstMAI GTCTC 2 cut(s) 358, 965
BstMBI GATC 4 cut(s) 137, 170, 400, 693
BstMWI GCNNNNNNNGC 3 cut(s) 919, 963, 1010
BstNI CCWGG 1 cut(s) 680
BstNSI RCATGY 2 cut(s) 386, 499
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 463
BstUI CGCG 1 cut(s) 849
BstV1I GCAGC 2 cut(s) 654, 1016
BstX2I RGATCY 3 cut(s) 170, 400, 693
BstYI RGATCY 3 cut(s) 170, 400, 693
BsuRI GGCC 1 cut(s) 922
BtsCI GGATG 2 cut(s) 618, 1061
BtuMI TCGCGA 1 cut(s) 849
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 164, 413, 903
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 985, 1028
CviAII CATG 3 cut(s) 383, 496, 586
DdeI CTNAG 3 cut(s) 121, 167, 958
DpnI GATC 4 cut(s) 139, 172, 402, 695
DpnII GATC 4 cut(s) 137, 170, 400, 693
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 687
Eco47I GGWCC 2 cut(s) 985, 1028
Eco53kI GAGCTC 1 cut(s) 685
EcoICRI GAGCTC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 386, 499, 589
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 3 cut(s) 382, 495, 585
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 2 cut(s) 668, 1005
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 668, 1005
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 668, 1005
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 1 cut(s) 922
HhaI GCGC 1 cut(s) 154
Hin1II CATG 3 cut(s) 386, 499, 589
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 5 cut(s) 119, 505, 575, 734, 1019
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 754
Hpy188I TCNGA 2 cut(s) 580, 603
Hpy188III TCNNGA 4 cut(s) 92, 535, 848, 1016
Hpy8I GTNNAC 1 cut(s) 754
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 919, 963, 1010
HpyF3I CTNAG 3 cut(s) 121, 167, 958
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 386, 499, 589
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 4 cut(s) 137, 170, 400, 693
LmnI GCTCC 4 cut(s) 149, 682, 930, 1018
Lsp1109I GCAGC 2 cut(s) 654, 1016
LweI GCATC 5 cut(s) 253, 654, 698, 825, 870
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 5 cut(s) 297, 326, 458, 735, 774
MalI GATC 4 cut(s) 139, 172, 402, 695
MboI GATC 4 cut(s) 137, 170, 400, 693
MboII GAAGA 7 cut(s) 16, 64, 107, 302, 500, 584, 758
MflI RGATCY 3 cut(s) 170, 400, 693
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 7 cut(s) 111, 181, 421, 762, 806, 855, 1034
MlyI GAGTC 2 cut(s) 113, 743
MmeI TCCRAC 1 cut(s) 1006
MnlI CCTC 4 cut(s) 391, 606, 1053, 1056
Mph1103I ATGCAT 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 912
MseI TTAA 7 cut(s) 114, 420, 450, 591, 611, 809, 993
MslI CAYNNNNRTG 2 cut(s) 47, 494
MspA1I CMGCKG 1 cut(s) 1007
MspR9I CCNGG 1 cut(s) 680
MvaI CCWGG 1 cut(s) 680
MvnI CGCG 1 cut(s) 849
MwoI GCNNNNNNNGC 3 cut(s) 919, 963, 1010
NdeII GATC 4 cut(s) 137, 170, 400, 693
NlaIII CATG 3 cut(s) 386, 499, 589
NlaIV GGNNCC 1 cut(s) 1030
NmuCI GTSAC 2 cut(s) 458, 735
NruI TCGCGA 1 cut(s) 849
NsiI ATGCAT 1 cut(s) 818
NspI RCATGY 2 cut(s) 386, 499
NspV TTCGAA 1 cut(s) 1039
OliI CACNNNNGTG 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 85
PciI ACATGT 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 3 cut(s) 505, 575, 1019
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 2 cut(s) 669, 1006
PleI GAGTC 2 cut(s) 113, 742
PpsI GAGTC 2 cut(s) 113, 742
PscI ACATGT 1 cut(s) 495
PshBI ATTAAT 2 cut(s) 114, 993
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 1030
PspPI GGNCC 2 cut(s) 985, 1028
PstI CTGCAG 1 cut(s) 467
PsuI RGATCY 3 cut(s) 170, 400, 693
RruI TCGCGA 1 cut(s) 849
RseI CAYNNNNRTG 2 cut(s) 47, 494
SacI GAGCTC 1 cut(s) 687
SaqAI TTAA 7 cut(s) 114, 420, 450, 591, 611, 809, 993
SatI GCNGC 2 cut(s) 668, 1005
Sau3AI GATC 4 cut(s) 137, 170, 400, 693
Sau96I GGNCC 2 cut(s) 985, 1028
SchI GAGTC 2 cut(s) 113, 743
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 5 cut(s) 253, 654, 698, 825, 870
SfcI CTRYAG 1 cut(s) 463
SfuI TTCGAA 1 cut(s) 1039
SinI GGWCC 2 cut(s) 985, 1028
SmiMI CAYNNNNRTG 2 cut(s) 47, 494
Sse9I AATT 7 cut(s) 111, 181, 421, 762, 806, 855, 1034
SsiI CCGC 2 cut(s) 254, 1007
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 534, 1039
TasI AATT 7 cut(s) 111, 181, 421, 762, 806, 855, 1034
TfiI GAWTC 3 cut(s) 505, 575, 1019
Tru1I TTAA 7 cut(s) 114, 420, 450, 591, 611, 809, 993
Tru9I TTAA 7 cut(s) 114, 420, 450, 591, 611, 809, 993
TseFI GTSAC 2 cut(s) 458, 735
TseI GCWGC 2 cut(s) 667, 1004
Tsp45I GTSAC 2 cut(s) 458, 735
TspDTI ATGAA 4 cut(s) 17, 416, 467, 848
TspGWI ACGGA 2 cut(s) 611, 1012
VpaK11BI GGWCC 2 cut(s) 985, 1028
VspI ATTAAT 2 cut(s) 114, 993
XapI RAATTY 2 cut(s) 181, 1034
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 2 cut(s) 386, 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.