Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

4002060 .. 4003601

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGTGGACAGAGTTCTCTCTCGAGGCAATTGGGATTCCAAGGCCAAACAAAGTAAATGGCTGCAAGCTTATAATTGTGTCTAGATCACTTCCGGTCTGCAGTGACATCCACATTGATAAGAAGTTTGAGATTAAACTTCTCTCAGGTACAGATGCAGAAGCATTGTTCGAGACTGAAGCTGGCATTAAGTTATCACAACTAGGGGATGATACTCGAGCCACAGCAAAGAACATGATAGAGGAACGTGATGGTTTTCCTTTGGCAATTATCTTGCTGGCACGAGCCTTGAGAGAATCAAAGACCGACGATGCTGAGGATGTTGATGGTGAATGGAAAAAAGCTTTGACTTGGTTGAAAGAATCTACAGCCCCCTTGGAAAGCATGAATGAGAGGGCATTTGCGCGTCTGAAATATAGCTATGATATGTTGAAGAAAGATGCTCAGCAGTGTTTCCTTTACTGTGCATTATACCCAGCTGGTCATGACATTGAAAAAAAAGAGTTGGTGGAGTATTGGTTCTGGGAGGGTTTATTGGATGGCAGAAAGAGAAGTGGGCAGATCGAAGATATGAAACGAGCAAAAGAGATAATAGATGAGCTGAATGGAGCTCACCTTCTCAAAATAGAAAGTCAAGAAGGTGGCAAAGAATACATCAAGATGAGAAACTTAGTTAGGCACATGGCAGTCCATCTTACCAAGATGAGCCCTGATCAGTTTCTCATCAAAGCAGGGGAGAAGCTTTCTGACTTCCCATCACAAGGCGAGTACTGGTCTGAAGTAGAGAGAGCCTCATTGATGAGAAATGAGTTTAAAGCACTTCGAGAAGAACCCAAGTTTCCCAAGCTATCCACATTACTTCTGCAGCACAACCCCATCACTCACTTGCATGATAATTTCTTTCGCAGTATGCCTAACATCAAAGTTCTTGACCTTTCTCATACTCATATCTATTCCCTTCCCAAATCAACCTTTTCTAACTTGACAAAACTAAAGGCATTACTGTTGCGAAATTGTCAGAACTTACACACTCTGCCTTCTTTGTCAACCTCTAAGAAAATACTTGTTCTTGACCTTTCTGATACTCCCATAACACGATTGCCGGATGGGATGAAGCAACTAACCAGCCTTATTCGCCTAAACTTGTCTCGTACCAATGTGGGAGAACTCGAAGCTGAACTAGTGCAGGAATTGCAACGTCTGAAAGAACTGCTAATGATAACGAATGATGCAGGTTCTCTGTGGGGATCAACCAAAGGAGCAAGTGTAAAGGAGCTGGGAGCCCTTTCGCACTTAGCTATACTTCACATCAACTTTGTAGATGCAGAAGCCTTTAATAGATATGTCAATTCAAGGAATCATTCTCTGTCCAAGTTCAAATTCTGTGTCGGCGGTTCTTGTAAGAAGCCGTTACCTGATAACAGCATAGCCTTCATCAATAGTAACATCCTTGTGAAAGGAAAACCAGTCTCACTGCCTGAAGACACATCGGAGTTGCATGTAATGAGAATTTGGATCTGCGTTGCTTGCCAAGTTGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

513

Amino Acids

58.09

Weight (kDa)

7.97

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	156 - 228	1.7e-07	Disease resistance protein Winged helix domain
LRR_14	PF23598	270 - 466	1.2e-12	Leucine-rich repeat region
LRR_8	PF13855	280 - 339	2.1e-12	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	1220
AccII	CGCG	1 cut(s)	403
AciI	CCGC	1 cut(s)	1389
AclWI	GGATC	2 cut(s)	1252, 1520
AcsI	RAATTY	2 cut(s)	1376, 1506
AcuI	CTGAAG	3 cut(s)	195, 795, 1497
AfaI	GTAC	3 cut(s)	148, 767, 1150
AfiI	CCNNNNNNNGG	1 cut(s)	758
AgsI	TTSAA	5 cut(s)	355, 430, 491, 1350, 1375
AhlI	ACTAGT	1 cut(s)	1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	1361, 1393
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	3 cut(s)	164, 1149, 1471
AlwI	GGATC	2 cut(s)	1252, 1520
Ama87I	CYCGRG	2 cut(s)	20, 213
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	60, 862
ApoI	RAATTY	2 cut(s)	1376, 1506
ArsI	GACNNNNNNTTYG	2 cut(s)	1368, 1400
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	338, 602
AvaI	CYCGRG	2 cut(s)	20, 213
BanII	GRGCYC	3 cut(s)	610, 707, 1282
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	1485
Bbv12I	GWGCWC	1 cut(s)	610
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	47, 874
BccI	CCATC	7 cut(s)	242, 317, 530, 696, 760, 881, 1097
BceAI	ACGGC	1 cut(s)	1390
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	3 cut(s)	164, 1149, 1471
BcuI	ACTAGT	1 cut(s)	1177
BfaI	CTAG	3 cut(s)	81, 200, 1178
BfmI	CTRYAG	3 cut(s)	97, 363, 860
BfuAI	ACCTGC	1 cut(s)	1220
BisI	GCNGC	2 cut(s)	61, 863
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	2 cut(s)	62, 864
BmcAI	AGTACT	1 cut(s)	767
BmeT110I	CYCGRG	2 cut(s)	20, 213
BmiI	GGNNCC	1 cut(s)	1279
BmsI	GCATC	5 cut(s)	142, 298, 427, 1216, 1309
BpiI	GAAGAC	1 cut(s)	1485
BplI	GAGNNNNNCTC	2 cut(s)	773, 805
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	38, 372
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 1248, 1278
Bsc4I	CCNNNNNNNGG	1 cut(s)	758
Bse1I	ACTGG	2 cut(s)	773, 1463
BseDI	CCNNGG	2 cut(s)	38, 372
BseGI	GGATG	7 cut(s)	105, 211, 322, 541, 1108, 1113, 1443
BseLI	CCNNNNNNNGG	1 cut(s)	758
BseMII	CTCAG	3 cut(s)	156, 303, 455
BseNI	ACTGG	2 cut(s)	773, 1463
BseXI	GCAGC	2 cut(s)	47, 874
BseYI	CCCAGC	2 cut(s)	472, 1273
BsgI	GTGCAG	1 cut(s)	1202
Bsh1236I	CGCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	20, 213
BsiSI	CCGG	2 cut(s)	92, 1100
BslI	CCNNNNNNNGG	1 cut(s)	758
BsmAI	GTCTC	3 cut(s)	164, 1149, 1471
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	2 cut(s)	20, 213
Bsp1286I	GDGCHC	3 cut(s)	610, 707, 1282
Bsp143I	GATC	5 cut(s)	83, 558, 709, 1244, 1512
Bsp1720I	GCTNAGC	1 cut(s)	441
BspACI	CCGC	1 cut(s)	1389
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	3 cut(s)	155, 304, 454
BspFNI	CGCG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	1279
BspMAI	CTGCAG	2 cut(s)	101, 864
BspMI	ACCTGC	1 cut(s)	1220
BspPI	GGATC	2 cut(s)	1252, 1520
BsrI	ACTGG	2 cut(s)	773, 1463
BssECI	CCNNGG	2 cut(s)	38, 372
BssMI	GATC	5 cut(s)	83, 558, 709, 1244, 1512
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	38, 372
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	461, 1002
BstAPI	GCANNNNNTGC	1 cut(s)	1189
BstC8I	GCNNGC	4 cut(s)	65, 181, 276, 1525
BstDEI	CTNAG	7 cut(s)	142, 312, 441, 667, 1050, 1291, 1539
BstF5I	GGATG	7 cut(s)	105, 211, 322, 541, 1108, 1113, 1443
BstFNI	CGCG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	5 cut(s)	86, 561, 712, 1247, 1515
BstMAI	GTCTC	3 cut(s)	164, 1149, 1471
BstMBI	GATC	5 cut(s)	83, 558, 709, 1244, 1512
BstMWI	GCNNNNNNNGC	3 cut(s)	1131, 1189, 1524
BstNSI	RCATGY	1 cut(s)	1499
BstSFI	CTRYAG	3 cut(s)	97, 363, 860
BstUI	CGCG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	47, 874
BstV2I	GAAGAC	1 cut(s)	1485
BstX2I	RGATCY	1 cut(s)	1512
BstYI	RGATCY	1 cut(s)	1512
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	7 cut(s)	105, 211, 322, 541, 1108, 1113, 1443
BtsI	GCAGTG	3 cut(s)	106, 452, 1469
BtsIMutI	CAGTG	3 cut(s)	106, 452, 1469
BveI	ACCTGC	1 cut(s)	1220
Cac8I	GCNNGC	4 cut(s)	65, 181, 276, 1525
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	403
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	147, 766, 1149
CviAII	CATG	6 cut(s)	232, 382, 482, 679, 887, 1496
CviQI	GTAC	3 cut(s)	147, 766, 1149
DdeI	CTNAG	7 cut(s)	142, 312, 441, 667, 1050, 1291, 1539
DpnI	GATC	5 cut(s)	85, 560, 711, 1246, 1514
DpnII	GATC	5 cut(s)	83, 558, 709, 1244, 1512
DraI	TTTAAA	1 cut(s)	811
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	2 cut(s)	38, 372
Eco24I	GRGCYC	3 cut(s)	610, 707, 1282
Eco53kI	GAGCTC	1 cut(s)	608
Eco57I	CTGAAG	3 cut(s)	195, 795, 1497
Eco88I	CYCGRG	2 cut(s)	20, 213
EcoICRI	GAGCTC	1 cut(s)	608
EcoT14I	CCWWGG	2 cut(s)	38, 372
EcoT38I	GRGCYC	3 cut(s)	610, 707, 1282
ErhI	CCWWGG	2 cut(s)	38, 372
FaeI	CATG	6 cut(s)	235, 385, 485, 682, 890, 1499
FatI	CATG	6 cut(s)	231, 381, 481, 678, 886, 1495
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	61, 863
FokI	GGATG	7 cut(s)	92, 218, 329, 548, 1115, 1120, 1430
FriOI	GRGCYC	3 cut(s)	610, 707, 1282
Fsp4HI	GCNGC	2 cut(s)	61, 863
FspBI	CTAG	3 cut(s)	81, 200, 1178
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	2 cut(s)	61, 863
GsaI	CCCAGC	2 cut(s)	476, 1277
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	92, 1100
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	6 cut(s)	235, 385, 485, 682, 890, 1499
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	1044
HindII	GTYRAC	1 cut(s)	1044
HindIII	AAGCTT	3 cut(s)	65, 339, 737
HinfI	GANTC	4 cut(s)	34, 293, 359, 1354
HpaII	CCGG	2 cut(s)	92, 1100
HphI	GGTGA	2 cut(s)	338, 602
Hpy166II	GTNNAC	2 cut(s)	6, 1044
Hpy188I	TCNGA	7 cut(s)	408, 745, 775, 1017, 1078, 1200, 1489
Hpy188III	TCNNGA	9 cut(s)	20, 81, 169, 482, 632, 655, 821, 926, 1067
Hpy8I	GTNNAC	2 cut(s)	6, 1044
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	5 cut(s)	623, 629, 965, 1044, 1438
HpyCH4III	ACNGT	2 cut(s)	461, 1002
HpyCH4IV	ACGT	2 cut(s)	244, 1195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1131, 1189, 1524
HpyF3I	CTNAG	7 cut(s)	142, 312, 441, 667, 1050, 1291, 1539
HpySE526I	ACGT	2 cut(s)	244, 1195
Hsp92II	CATG	6 cut(s)	235, 385, 485, 682, 890, 1499
HspAI	GCGC	1 cut(s)	401
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	83, 558, 709, 1244, 1512
LmnI	GCTCC	4 cut(s)	605, 1256, 1270, 1277
Lsp1109I	GCAGC	2 cut(s)	47, 874
LweI	GCATC	5 cut(s)	142, 298, 427, 1216, 1309
MaeI	CTAG	3 cut(s)	81, 200, 1178
MaeII	ACGT	2 cut(s)	244, 1195
MaeIII	GTNAC	3 cut(s)	101, 1407, 1439
MalI	GATC	5 cut(s)	85, 560, 711, 1246, 1514
MboI	GATC	5 cut(s)	83, 558, 709, 1244, 1512
MboII	GAAGA	4 cut(s)	442, 575, 836, 1490
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	1512
MhlI	GDGCHC	3 cut(s)	610, 707, 1282
MluCI	AATT	9 cut(s)	27, 72, 264, 892, 1009, 1187, 1345, 1376, 1506
MnlI	CCTC	7 cut(s)	16, 232, 307, 384, 517, 799, 1057
MseI	TTAA	4 cut(s)	132, 186, 810, 1332
MslI	CAYNNNNRTG	3 cut(s)	656, 885, 1448
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	2 cut(s)	92, 1100
MunI	CAATTG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	1131, 1189, 1524
NdeII	GATC	5 cut(s)	83, 558, 709, 1244, 1512
NlaIII	CATG	6 cut(s)	235, 385, 485, 682, 890, 1499
NlaIV	GGNNCC	1 cut(s)	1279
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	1499
PaeR7I	CTCGAG	2 cut(s)	20, 213
PagI	TCATGA	1 cut(s)	481
PfeI	GAWTC	4 cut(s)	34, 293, 359, 1354
PkrI	GCNGC	2 cut(s)	62, 864
PsiI	TTATAA	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	610
PspFI	CCCAGC	2 cut(s)	472, 1273
PspN4I	GGNNCC	1 cut(s)	1279
PspXI	VCTCGAGB	1 cut(s)	213
PstI	CTGCAG	2 cut(s)	101, 864
PsuI	RGATCY	1 cut(s)	1512
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	3 cut(s)	148, 767, 1150
RsaNI	GTAC	3 cut(s)	147, 766, 1149
RseI	CAYNNNNRTG	3 cut(s)	656, 885, 1448
SacI	GAGCTC	1 cut(s)	610
SaqAI	TTAA	4 cut(s)	132, 186, 810, 1332
SatI	GCNGC	2 cut(s)	61, 863
Sau3AI	GATC	5 cut(s)	83, 558, 709, 1244, 1512
ScaI	AGTACT	1 cut(s)	767
SduI	GDGCHC	3 cut(s)	610, 707, 1282
SfaNI	GCATC	5 cut(s)	142, 298, 427, 1216, 1309
SfcI	CTRYAG	3 cut(s)	97, 363, 860
Sfr274I	CTCGAG	2 cut(s)	20, 213
SlaI	CTCGAG	2 cut(s)	20, 213
SmiMI	CAYNNNNRTG	3 cut(s)	656, 885, 1448
SmlI	CTYRAG	3 cut(s)	20, 213, 286
SmoI	CTYRAG	3 cut(s)	20, 213, 286
SpeI	ACTAGT	1 cut(s)	1177
Sse9I	AATT	9 cut(s)	27, 72, 264, 892, 1009, 1187, 1345, 1376, 1506
SsiI	CCGC	1 cut(s)	1389
SspMI	CTAG	3 cut(s)	81, 200, 1178
SstI	GAGCTC	1 cut(s)	610
StyI	CCWWGG	2 cut(s)	38, 372
TaaI	ACNGT	2 cut(s)	461, 1002
TaiI	ACGT	2 cut(s)	247, 1198
TaqI	TCGA	6 cut(s)	21, 168, 214, 561, 820, 1167
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	9 cut(s)	27, 72, 264, 892, 1009, 1187, 1345, 1376, 1506
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	4 cut(s)	34, 293, 359, 1354
Tru1I	TTAA	4 cut(s)	132, 186, 810, 1332
Tru9I	TTAA	4 cut(s)	132, 186, 810, 1332
TscAI	CASTG	3 cut(s)	106, 452, 1476
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	60, 862
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	398, 584, 1124, 1420
TspRI	CASTG	3 cut(s)	106, 452, 1476
XapI	RAATTY	2 cut(s)	1376, 1506
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	1 cut(s)	1499
XhoI	CTCGAG	2 cut(s)	20, 213
XspI	CTAG	3 cut(s)	81, 200, 1178
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.