Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008991.1

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Forward (+)

30745 .. 32944

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008991.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtctggtttaggcaagtcgaatattgtatcgcaagttaatgatctgatattacatgaggaagatgttgatgataacacaggaaatggccattttgataaagttctttttgtgactgtaaagaatgagctcgtatcaactaaagcatccgttgaggatctgcagaagcagattgcagataaattacaaattgatcttcacaaggaaattggaagtagtgcagatgatgcattggcaagtgccttcgccaagttaagatttctgataattttggatgatatgcagacagaaccgtctcttgaggcaatcagcattccaaggccaagtgaagagaatcgctgcaaggttattattgtattcagctcacttacactgtgcagcgacatccacgttgatgaaaagtttgagatcaaacctttatctgctacagaggcacaaaaactgtttgagagtgaagctggcattaaattgtcaaagctaggggatgatactcaagccattgcaaagaagatgatagatgaatgtgatgatccttctgcagcagacggaggagaactagtgaggccgagtccggatgtcttagaggtacggcttctgaatccatgggacaacgaagtaggtgacttagcctacggtgtcgttgaggacgctgaggaaacaatcaacgagggcggcgccctggctggcgttgactgtgtagagggtggaggtgatgatggtggggccagtgccaaggctgaaggcggtgcgggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_4 LRR_8 NB-ARC

Protein Analysis

251

Amino Acids

26.7

Weight (kDa)

4.26

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	674
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	3 cut(s)	672, 744, 749
AclWI	GGATC	2 cut(s)	165, 524
AcoI	YGGCCR	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	1 cut(s)	588
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	130, 363, 458, 478
AluI	AGCT	4 cut(s)	130, 363, 458, 478
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	165, 524
Aor13HI	TCCGGA	1 cut(s)	571
AoxI	GGCC	4 cut(s)	88, 320, 563, 723
ApeKI	GCWGC	3 cut(s)	339, 378, 539
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	2 cut(s)	632, 722
BalI	TGGCCA	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	326, 390, 551
BccI	CCATC	1 cut(s)	710
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	300
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	3 cut(s)	479, 557, 754
BfmI	CTRYAG	3 cut(s)	161, 426, 537
BfoI	RGCGCY	1 cut(s)	678
BisI	GCNGC	4 cut(s)	340, 379, 540, 673
BlsI	GCNGC	4 cut(s)	341, 380, 541, 674
Bme1390I	CCNGG	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	2 cut(s)	676, 724
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	155, 217
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	320, 477
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	4 cut(s)	317, 602, 678, 732
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bse1I	ACTGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	4 cut(s)	317, 602, 678, 732
BseGI	GGATG	5 cut(s)	146, 280, 384, 490, 580
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	726
BseRI	GAGGAG	1 cut(s)	564
BseXI	GCAGC	3 cut(s)	326, 390, 551
BsgI	GTGCAG	2 cut(s)	240, 397
BshFI	GGCC	4 cut(s)	90, 322, 565, 725
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	4 cut(s)	90, 322, 565, 725
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	43, 157, 193, 408, 529
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	3 cut(s)	672, 744, 749
BspANI	GGCC	4 cut(s)	90, 322, 565, 725
BspCNI	CTCAG	1 cut(s)	643
BspEI	TCCGGA	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	676, 724
BspMAI	CTGCAG	2 cut(s)	165, 541
BspPI	GGATC	2 cut(s)	165, 524
BspT107I	GGYRCC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	726
BssECI	CCNNGG	4 cut(s)	317, 602, 678, 732
BssMI	GATC	5 cut(s)	43, 157, 193, 408, 529
BssNI	GRCGYC	1 cut(s)	675
BssT1I	CCWWGG	3 cut(s)	317, 602, 732
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	6 cut(s)	118, 294, 375, 444, 635, 695
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	675
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	460, 685, 751
BstDEI	CTNAG	3 cut(s)	580, 625, 651
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	5 cut(s)	146, 280, 384, 490, 580
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	5 cut(s)	46, 160, 196, 411, 532
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	5 cut(s)	43, 157, 193, 408, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 431, 750
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	3 cut(s)	161, 426, 537
BstV1I	GCAGC	3 cut(s)	326, 390, 551
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	90, 322, 565, 725
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	5 cut(s)	146, 280, 384, 490, 580
BtsIMutI	CAGTG	2 cut(s)	371, 733
Cac8I	GCNNGC	3 cut(s)	460, 685, 751
CfoI	GCGC	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	723
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	2 cut(s)	56, 603
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	3 cut(s)	580, 625, 651
DinI	GGCGCC	1 cut(s)	676
DpnI	GATC	5 cut(s)	45, 159, 195, 410, 531
DpnII	GATC	5 cut(s)	43, 157, 193, 408, 529
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	317, 602, 732
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	3 cut(s)	317, 602, 732
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	676
EheI	GGCGCC	1 cut(s)	676
ErhI	CCWWGG	3 cut(s)	317, 602, 732
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	2 cut(s)	59, 606
FaiI	YATR	3 cut(s)	57, 281, 604
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	2 cut(s)	55, 602
FauI	CCCGC	1 cut(s)	742
Fnu4HI	GCNGC	4 cut(s)	340, 379, 540, 673
FokI	GGATG	5 cut(s)	133, 287, 371, 497, 587
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	340, 379, 540, 673
FspBI	CTAG	3 cut(s)	479, 557, 754
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	4 cut(s)	340, 379, 540, 673
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	90, 322, 565, 725
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	2 cut(s)	59, 606
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	3 cut(s)	334, 568, 598
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	2 cut(s)	632, 722
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	3 cut(s)	48, 264, 597
Hpy188III	TCNNGA	2 cut(s)	299, 572
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	3 cut(s)	253, 543, 734
HpyCH4III	ACNGT	6 cut(s)	118, 294, 375, 444, 635, 695
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	9 cut(s)	163, 176, 221, 230, 283, 342, 378, 503, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 431, 750
HpyF3I	CTNAG	3 cut(s)	580, 625, 651
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	2 cut(s)	59, 606
HspAI	GCGC	1 cut(s)	675
KasI	GGCGCC	1 cut(s)	674
Kpn2I	TCCGGA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	43, 157, 193, 408, 529
LpnPI	CCDG	7 cut(s)	66, 444, 585, 665, 669, 692, 739
Lsp1109I	GCAGC	3 cut(s)	326, 390, 551
LweI	GCATC	2 cut(s)	155, 217
MaeI	CTAG	3 cut(s)	479, 557, 754
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	112, 620
MalI	GATC	5 cut(s)	45, 159, 195, 410, 531
MboI	GATC	5 cut(s)	43, 157, 193, 408, 529
MboII	GAAGA	4 cut(s)	74, 188, 341, 520
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	5 cut(s)	182, 189, 207, 267, 467
MluNI	TGGCCA	1 cut(s)	90
Mly113I	GGCGCC	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	577
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	232
MroI	TCCGGA	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	3 cut(s)	39, 254, 465
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	227, 431, 750
NarI	GGCGCC	1 cut(s)	675
NcoI	CCATGG	1 cut(s)	602
NdeII	GATC	5 cut(s)	43, 157, 193, 408, 529
NlaIII	CATG	2 cut(s)	59, 606
NlaIV	GGNNCC	2 cut(s)	676, 724
NmeAIII	GCCGAG	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	112, 620
NsiI	ATGCAT	1 cut(s)	232
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	334, 598
PkrI	GCNGC	4 cut(s)	341, 380, 541, 674
PleI	GAGTC	1 cut(s)	576
PluTI	GGCGCC	1 cut(s)	678
PpsI	GAGTC	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	676, 724
PspPI	GGNCC	1 cut(s)	723
PstI	CTGCAG	2 cut(s)	165, 541
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	39, 254, 465
SatI	GCNGC	4 cut(s)	340, 379, 540, 673
Sau3AI	GATC	5 cut(s)	43, 157, 193, 408, 529
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	155, 217
SfcI	CTRYAG	3 cut(s)	161, 426, 537
SfoI	GGCGCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	299, 492
SmoI	CTYRAG	2 cut(s)	299, 492
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	5 cut(s)	182, 189, 207, 267, 467
SsiI	CCGC	3 cut(s)	672, 744, 749
SspDI	GGCGCC	1 cut(s)	674
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	479, 557, 754
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	3 cut(s)	317, 602, 732
TaaI	ACNGT	6 cut(s)	118, 294, 375, 444, 635, 695
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	182, 189, 207, 267, 467
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	2 cut(s)	334, 598
Tru1I	TTAA	3 cut(s)	39, 254, 465
Tru9I	TTAA	3 cut(s)	39, 254, 465
TscAI	CASTG	2 cut(s)	378, 733
TseFI	GTSAC	2 cut(s)	112, 620
TseI	GCWGC	3 cut(s)	339, 378, 539
Tsp45I	GTSAC	2 cut(s)	112, 620
TspDTI	ATGAA	2 cut(s)	411, 534
TspGWI	ACGGA	2 cut(s)	139, 561
TspRI	CASTG	2 cut(s)	378, 733
XspI	CTAG	3 cut(s)	479, 557, 754
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.