Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

4954942 .. 4955905

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCAGAAGGGTCGAAAATTGAAGAGGACATTCTGGAACAACTGAGGGGTGAATTAGAACAACAGTTGAAGGAGAAGGTGGTAAGAAAGTCTTTAAGAAAATGTGACTGGTTGCAAAAAGCAGATGAATTTATCAATGGCTTTCATCCAGCGCTTGAAGCAGTCAGAATAAGCAAGAATTTCTGTGGTCTACCATACTATAGGTCACGGTACAAAGCAGGAAAATATGTTGCAGCAAGAATTAGGCAGAATAAAATTGCAGAGAAATTACATATTGACCTGAATAAAGCCACTGGAAGTAGAGCAGATACATTGGAAAGTGCATTGAAGGAGTTGCGATTTTTGATCATTCTGGATGATATGCGGAAGAAGCTGTCTCTTGAGCTAATTGGGATTCCAGTGCCAACGAGGAAAAATGGCTGCAAGGTTATAATAGTATCTAGATCACTTCCAGTGTTCAGTGACATCAAAATTGATAAGAAGGTTGAGATCAAACCTCTTTCAGATACAGCGGCACGAGAATTGTTTGAGAGGGAAGCTGGCATTAGATTCTCAGACTTGAGGGATGAACCCAAACTATGGCAGAGAAGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

199

Amino Acids

23.01

Weight (kDa)

9.61

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	84 - 180	1.7e-13	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	2 cut(s)	364, 512
AcsI	RAATTY	2 cut(s)	128, 178
AfaI	GTAC	1 cut(s)	212
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	579
AgsI	TTSAA	4 cut(s)	23, 70, 158, 328
AluBI	AGCT	3 cut(s)	373, 385, 539
AluI	AGCT	3 cut(s)	373, 385, 539
Alw26I	GTCTC	1 cut(s)	381
Aor51HI	AGCGCT	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	233, 420
ApoI	RAATTY	2 cut(s)	128, 178
AspLEI	GCGC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	62
BauI	CACGAG	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	245, 407
BccI	CCATC	1 cut(s)	585
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	3 cut(s)	234, 421, 513
BlsI	GCNGC	3 cut(s)	235, 422, 514
BpuEI	CTTGAG	2 cut(s)	401, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse1I	ACTGG	4 cut(s)	113, 298, 398, 452
BseGI	GGATG	3 cut(s)	145, 361, 571
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	35, 567
BseNI	ACTGG	4 cut(s)	113, 298, 398, 452
BseXI	GCAGC	2 cut(s)	245, 407
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	345, 443, 489
BspACI	CCGC	2 cut(s)	364, 512
BspCNI	CTCAG	2 cut(s)	36, 566
BsrI	ACTGG	4 cut(s)	113, 298, 398, 452
BssMI	GATC	3 cut(s)	345, 443, 489
BssSI	CACGAG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	66, 210
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	2 cut(s)	44, 553
BstF5I	GGATG	3 cut(s)	145, 361, 571
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	348, 446, 492
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	3 cut(s)	345, 443, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 370
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	245, 407
BtsCI	GGATG	3 cut(s)	145, 361, 571
BtsIMutI	CAGTG	4 cut(s)	291, 405, 459, 466
Cac8I	GCNNGC	1 cut(s)	541
CfoI	GCGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	211
CviJI	RGCY	6 cut(s)	141, 290, 373, 385, 420, 539
CviKI_1	RGCY	6 cut(s)	141, 290, 373, 385, 420, 539
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	44, 553
DpnI	GATC	3 cut(s)	347, 445, 491
DpnII	GATC	3 cut(s)	345, 443, 489
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco47III	AGCGCT	1 cut(s)	153
FaiI	YATR	7 cut(s)	196, 201, 228, 273, 362, 431, 580
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	234, 421, 513
FokI	GGATG	3 cut(s)	132, 368, 578
Fsp4HI	GCNGC	3 cut(s)	234, 421, 513
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	234, 421, 513
HaeII	RGCGCY	1 cut(s)	155
HhaI	GCGC	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	2 cut(s)	394, 549
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	7, 167, 505, 556
Hpy188III	TCNNGA	4 cut(s)	35, 353, 380, 441
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	64, 70, 322, 475
HpyCH4III	ACNGT	2 cut(s)	66, 210
HpyCH4V	TGCA	5 cut(s)	115, 233, 260, 323, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 370
HpyF3I	CTNAG	2 cut(s)	44, 553
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	345, 443, 489
Lsp1109I	GCAGC	2 cut(s)	245, 407
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	3 cut(s)	104, 204, 461
MalI	GATC	3 cut(s)	347, 445, 491
MboI	GATC	3 cut(s)	345, 443, 489
MboII	GAAGA	2 cut(s)	35, 379
MnlI	CCTC	6 cut(s)	19, 39, 402, 507, 525, 555
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	158, 370
NdeII	GATC	3 cut(s)	345, 443, 489
NmuCI	GTSAC	3 cut(s)	104, 204, 461
PfeI	GAWTC	2 cut(s)	394, 549
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	3 cut(s)	235, 422, 514
PsiI	TTATAA	1 cut(s)	431
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	3 cut(s)	234, 421, 513
Sau3AI	GATC	3 cut(s)	345, 443, 489
SetI	ASST	9 cut(s)	81, 206, 282, 375, 387, 429, 486, 499, 541
SfcI	CTRYAG	1 cut(s)	199
SmlI	CTYRAG	2 cut(s)	380, 559
SmoI	CTYRAG	2 cut(s)	380, 559
SsiI	CCGC	2 cut(s)	364, 512
SspMI	CTAG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	66, 210
TaqI	TCGA	1 cut(s)	14
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	2 cut(s)	394, 549
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	4 cut(s)	298, 405, 459, 466
TseFI	GTSAC	3 cut(s)	104, 204, 461
TseI	GCWGC	2 cut(s)	233, 420
Tsp45I	GTSAC	3 cut(s)	104, 204, 461
TspDTI	ATGAA	3 cut(s)	134, 141, 582
TspRI	CASTG	4 cut(s)	298, 405, 459, 466
Van91I	CCANNNNNTGG	1 cut(s)	579
XapI	RAATTY	2 cut(s)	128, 178
XbaI	TCTAGA	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.