Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

3980568 .. 3981371

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG050100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGAAAATGACCAAACTTATTCGCCTAAACATATCTCGCACCAATGTGAAGATATTTCCATCTAAGTTAGCACCTGCATTAGCACATCTGGAAGAACTGTTGATGCTAATTAATGACTCAGGTTTTTATTGGGGATCAACCAAGGGAGCACATATCAGCGAGCTGAGCTCCTGCCAAAATTTAGCTATTCTCCATGCCAACTTCCTAAATGCAGAAACATTTGTTAGCTATGTTGATAAGCATCTTTGTCCGCCCAGTTTCAGGTTCGGTGTGGGTGGCTCTTGTGAAGAAAAGTTACTTGAAAACAGCATAGTTTTCAAGGGTAACTTCCTTGTGAATGGAGAACCAGTCTCACTCCCAGAACACACATCCGGACTGCATGTCATAAGCAATGAGGATCTACCTTGCTTGCAAGTTAATTGTCATCTAAAGAACCTGAAGGTCATTAACATTTGTGACTGCAGATGTTTGGTCCGTTTATTCACCATTGACATGTTGGGGAATCTTCCAAACCTTGAAACCATTTTAGTCGAGAAATGTCCAAAGATTGTGAGCTTGATAGAGCCAGAAGAATCTGATGACATGATTAAACCTCGTCTGAAACACCTAAAGGTCATCCGTATCTCTGACTGCGAAAGTTTGGTTTACTTATTCAACAATGAGATGCTGCAATACTTCCCGGAGCTCCTAGAGATCTCCATCAAACGATGCCAGATGATAGAAGTTGTAATAGAGTCACAAGAGCCAAATGTCTACCTTGCAATTCTTCCAAAGTTACAGGAGTTGGTATTGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

267

Amino Acids

30.16

Weight (kDa)

5.93

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	139 - 181	7.9e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	201 - 251	2e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	756
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	145, 408
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	4 cut(s)	305, 322, 521, 658
AhdI	GACNNNNNGTC	1 cut(s)	383
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	6 cut(s)	166, 171, 188, 231, 558, 688
AluI	AGCT	6 cut(s)	166, 171, 188, 231, 558, 688
Alw21I	GWGCWC	3 cut(s)	154, 173, 690
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	145, 408
Aor13HI	TCCGGA	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	670, 797
ApoI	RAATTY	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	475
BanII	GRGCYC	2 cut(s)	173, 690
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
Bbv12I	GWGCWC	3 cut(s)	154, 173, 690
BbvI	GCAGC	2 cut(s)	657, 784
BccI	CCATC	2 cut(s)	70, 710
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	463
BfuAI	ACCTGC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	2 cut(s)	671, 798
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	2 cut(s)	672, 799
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	475
BmeRI	GACNNNNNGTC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	4 cut(s)	96, 253, 657, 701
BmuI	ACTGGG	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	683
BsaBI	GATNNNNATC	2 cut(s)	243, 701
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	258, 350
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	2 cut(s)	243, 701
BseAI	TCCGGA	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	371, 618
BseJI	GATNNNNATC	2 cut(s)	243, 701
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	135, 158
BseNI	ACTGG	2 cut(s)	258, 350
BseXI	GCAGC	2 cut(s)	657, 784
BsiHKAI	GWGCWC	3 cut(s)	154, 173, 690
BsiSI	CCGG	2 cut(s)	375, 683
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	3 cut(s)	154, 173, 690
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	137, 400, 696
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	134, 159
BspEI	TCCGGA	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	467
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	145, 408
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	258, 350
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	137, 400, 696
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	164, 413
BstDEI	CTNAG	3 cut(s)	66, 121, 167
BstF5I	GGATG	2 cut(s)	371, 618
BstKTI	GATC	3 cut(s)	140, 403, 699
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	137, 400, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	2 cut(s)	386, 499
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	657, 784
BstX2I	RGATCY	2 cut(s)	400, 696
BstYI	RGATCY	2 cut(s)	400, 696
BtsCI	GGATG	2 cut(s)	371, 618
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	164, 413
Cfr13I	GGNCC	1 cut(s)	475
CviAII	CATG	4 cut(s)	197, 383, 496, 586
DdeI	CTNAG	3 cut(s)	66, 121, 167
DpnI	GATC	3 cut(s)	139, 402, 698
DpnII	GATC	3 cut(s)	137, 400, 696
DriI	GACNNNNNGTC	1 cut(s)	383
Eam1105I	GACNNNNNGTC	1 cut(s)	383
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	2 cut(s)	171, 688
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	173, 690
Eco47I	GGWCC	1 cut(s)	475
Eco53kI	GAGCTC	2 cut(s)	171, 688
Eco57I	CTGAAG	1 cut(s)	461
EcoICRI	GAGCTC	2 cut(s)	171, 688
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	173, 690
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	200, 386, 499, 589
FaiI	YATR	9 cut(s)	35, 156, 198, 234, 314, 384, 389, 497, 587
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	4 cut(s)	196, 382, 495, 585
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	671, 798
FokI	GGATG	2 cut(s)	358, 605
FriOI	GRGCYC	2 cut(s)	173, 690
Fsp4HI	GCNGC	2 cut(s)	671, 798
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	2 cut(s)	671, 798
HapII	CCGG	2 cut(s)	375, 683
Hin1II	CATG	4 cut(s)	200, 386, 499, 589
HinfI	GANTC	4 cut(s)	119, 505, 575, 737
HpaII	CCGG	2 cut(s)	375, 683
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	649, 757
Hpy188I	TCNGA	3 cut(s)	580, 603, 631
Hpy188III	TCNNGA	3 cut(s)	92, 375, 535
Hpy8I	GTNNAC	2 cut(s)	649, 757
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	7 cut(s)	80, 215, 382, 415, 465, 673, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	66, 121, 167
Hsp92II	CATG	4 cut(s)	200, 386, 499, 589
Kpn2I	TCCGGA	1 cut(s)	374
Kzo9I	GATC	3 cut(s)	137, 400, 696
LmnI	GCTCC	4 cut(s)	149, 176, 685, 693
Lsp1109I	GCAGC	2 cut(s)	657, 784
LweI	GCATC	4 cut(s)	96, 253, 657, 701
MaeI	CTAG	1 cut(s)	692
MaeIII	GTNAC	5 cut(s)	297, 326, 458, 738, 777
MalI	GATC	3 cut(s)	139, 402, 698
MboI	GATC	3 cut(s)	137, 400, 696
MboII	GAAGA	7 cut(s)	16, 64, 107, 302, 500, 584, 761
MflI	RGATCY	2 cut(s)	400, 696
MhlI	GDGCHC	3 cut(s)	154, 173, 690
MluCI	AATT	4 cut(s)	111, 181, 421, 765
MlyI	GAGTC	2 cut(s)	113, 746
MnlI	CCTC	2 cut(s)	391, 606
MroI	TCCGGA	1 cut(s)	374
MseI	TTAA	5 cut(s)	114, 420, 450, 591, 802
MslI	CAYNNNNRTG	2 cut(s)	47, 494
MspI	CCGG	2 cut(s)	375, 683
MspR9I	CCNGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	683
NdeII	GATC	3 cut(s)	137, 400, 696
NlaIII	CATG	4 cut(s)	200, 386, 499, 589
NmuCI	GTSAC	2 cut(s)	458, 738
NspI	RCATGY	2 cut(s)	386, 499
OliI	CACNNNNGTG	1 cut(s)	47
PaqCI	CACCTGC	1 cut(s)	85
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	505, 575
PfoI	TCCNGGA	1 cut(s)	681
PkrI	GCNGC	2 cut(s)	672, 799
PleI	GAGTC	2 cut(s)	113, 745
PpsI	GAGTC	2 cut(s)	113, 745
PscI	ACATGT	1 cut(s)	495
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	2 cut(s)	173, 690
PspPI	GGNCC	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	400, 696
RseI	CAYNNNNRTG	2 cut(s)	47, 494
SacI	GAGCTC	2 cut(s)	173, 690
SaqAI	TTAA	5 cut(s)	114, 420, 450, 591, 802
SatI	GCNGC	2 cut(s)	671, 798
Sau3AI	GATC	3 cut(s)	137, 400, 696
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	2 cut(s)	113, 746
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	3 cut(s)	154, 173, 690
SfaNI	GCATC	4 cut(s)	96, 253, 657, 701
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	47, 494
Sse9I	AATT	4 cut(s)	111, 181, 421, 765
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	692
SstI	GAGCTC	2 cut(s)	173, 690
StyD4I	CCNGG	1 cut(s)	681
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	534
TasI	AATT	4 cut(s)	111, 181, 421, 765
TfiI	GAWTC	2 cut(s)	505, 575
Tru1I	TTAA	5 cut(s)	114, 420, 450, 591, 802
Tru9I	TTAA	5 cut(s)	114, 420, 450, 591, 802
TseFI	GTSAC	2 cut(s)	458, 738
TseI	GCWGC	2 cut(s)	670, 797
Tsp45I	GTSAC	2 cut(s)	458, 738
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	467, 611
VpaK11BI	GGWCC	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	386, 499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.