Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001972.1

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Forward (+)

87524 .. 89218

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001972.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgctcatgttgcatgtccatgcaaccgacgctaacgttgctgaggcgaacgaggatgtggatgcgactgagtcccccatagaagcggtgaaagcagatgaatttatcaatggctttgaaccggagcttgaagcagtcagaataagcaagaattgctgtggcctaccatactataggtcacgcggcacaaaactactcggcgaggcagcaagaagtatggttaaagagattaaggagtatgtaacaggaaaggaagtcgggactatacgtgtttatggaatggctggtttcggcaagacaacagttgtgtcggaagttaatgacctcatagtgaatgactacagaagttgtgccccagaaggtacaaatagcggcagtagatacactgaaaaccattttgacaaaattatatgggttactatagagcatcgaggatcaactcaatcatctattgacaacttgcagaataaaattgcagagaaattacatattgatttgtgcataaagccactgggagtagagcgcgcagatacatttgaaagtgcattgaaggagttaagatttttgatcattctggatgatatgcggaagaagctgtctcttgagctaattgggattctaccaacgagggaaaatggctgcaaggttataatagtatctagatcacttccagtgttcagtgacatcaaaattgataagaaggttgagatcaaacctctttcagatacagcggcacgagaattgtttgagagggaagctggcattagattctcagacttgagggatgatactcaaactatggcagagaaaatggtagatgactgtgatagtttgcccttggctattggctttctggctcggatcatgaaagaattaaagagtgatgctgctgagagtgtcgatgctgcacggaatgcagcccttttgaagttacagagttctcacttggaaagcatgaatgaaaaggcattcgctcgtctaaagtacagctatgaaatattgaagaaagatgctccgcaatgtctcctgtattgtgccttgtacccatgtggtcattacattgttagtcaaggtggcagggaatgcataaagatgcgcagattggttaagcatatggcagtccagactaccaaagcaagtcctcagcttttcaccgaagctgggcatcagaaagaaaaattcctaggggattggctacacataacagctgtcacctttgatgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_4 LRR_8 NB-ARC

Protein Analysis

408

Amino Acids

45.67

Weight (kDa)

6.0

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc16I	TGCGCA	1 cut(s)	1097
AccII	CGCG	2 cut(s)	183, 525
AciI	CCGC	6 cut(s)	86, 183, 372, 586, 731, 1016
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	2 cut(s)	442, 869
AcsI	RAATTY	2 cut(s)	101, 1178
AfaI	GTAC	3 cut(s)	364, 986, 1043
AfiI	CCNNNNNNNGG	1 cut(s)	1161
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	119, 131, 539, 550, 928, 1003
AluBI	AGCT	8 cut(s)	127, 595, 607, 758, 990, 1147, 1160, 1208
AluI	AGCT	8 cut(s)	127, 595, 607, 758, 990, 1147, 1160, 1208
Alw26I	GTCTC	2 cut(s)	603, 1028
AlwI	GGATC	2 cut(s)	442, 869
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	5 cut(s)	206, 639, 887, 905, 917
ApoI	RAATTY	2 cut(s)	101, 1178
AspA2I	CCTAGG	1 cut(s)	1183
AspLEI	GCGC	3 cut(s)	525, 527, 1098
AsuHPI	GGTGA	3 cut(s)	100, 1144, 1204
AvrII	CCTAGG	1 cut(s)	1183
BaeGI	GKGCMC	1 cut(s)	355
BauI	CACGAG	1 cut(s)	735
BbvCI	CCTCAGC	2 cut(s)	42, 1143
BbvI	GCAGC	5 cut(s)	218, 626, 874, 892, 929
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	603, 1028
BfaI	CTAG	3 cut(s)	660, 1184, 1225
BfmI	CTRYAG	3 cut(s)	172, 340, 420
BisI	GCNGC	8 cut(s)	184, 207, 373, 640, 732, 888, 906, 918
BlnI	CCTAGG	1 cut(s)	1183
BlsI	GCNGC	8 cut(s)	185, 208, 374, 641, 733, 889, 907, 919
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	8 cut(s)	52, 436, 874, 892, 1000, 1083, 1174, 1210
BmuI	ACTGGG	1 cut(s)	521
Bpu10I	CCTNAGC	2 cut(s)	42, 1143
BpuEI	CTTGAG	2 cut(s)	623, 799
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	837, 1183
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	1161
Bse1I	ACTGG	2 cut(s)	516, 671
Bse3DI	GCAATG	1 cut(s)	1025
BseDI	CCNNGG	2 cut(s)	837, 1183
BseGI	GGATG	4 cut(s)	61, 67, 583, 790
BseLI	CCNNNNNNNGG	1 cut(s)	1161
BseMI	GCAATG	1 cut(s)	1025
BseMII	CTCAG	5 cut(s)	33, 60, 786, 882, 1157
BseNI	ACTGG	2 cut(s)	516, 671
BsePI	GCGCGC	1 cut(s)	523
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	5 cut(s)	218, 626, 874, 892, 929
BseYI	CCCAGC	1 cut(s)	1160
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	2 cut(s)	183, 525
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	58, 274
BslI	CCNNNNNNNGG	1 cut(s)	1161
BsmAI	GTCTC	2 cut(s)	603, 1028
BsmFI	GGGAC	2 cut(s)	58, 274
BsmI	GAATGC	3 cut(s)	919, 968, 1088
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	434, 567, 662, 708, 861
BspACI	CCGC	6 cut(s)	86, 183, 372, 586, 731, 1016
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	5 cut(s)	34, 61, 785, 883, 1156
BspFNI	CGCG	2 cut(s)	183, 525
BspHI	TCATGA	1 cut(s)	864
BspPI	GGATC	2 cut(s)	442, 869
BsrDI	GCAATG	1 cut(s)	1025
BsrI	ACTGG	2 cut(s)	516, 671
BssECI	CCNNGG	2 cut(s)	837, 1183
BssHII	GCGCGC	1 cut(s)	523
BssMI	GATC	5 cut(s)	434, 567, 662, 708, 861
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	837, 1183
Bst2BI	CACGAG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	304, 824
BstAPI	GCANNNNNTGC	3 cut(s)	153, 914, 1083
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	525, 760
BstDEI	CTNAG	5 cut(s)	42, 69, 772, 891, 1143
BstF5I	GGATG	4 cut(s)	61, 67, 583, 790
BstFNI	CGCG	2 cut(s)	183, 525
BstHHI	GCGC	3 cut(s)	525, 527, 1098
BstKTI	GATC	5 cut(s)	437, 570, 665, 711, 864
BstMAI	GTCTC	2 cut(s)	603, 1028
BstMBI	GATC	5 cut(s)	434, 567, 662, 708, 861
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 29, 38, 92, 153, 592, 914, 1083
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	3 cut(s)	172, 340, 420
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	2 cut(s)	183, 525
BstV1I	GCAGC	5 cut(s)	218, 626, 874, 892, 929
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	4 cut(s)	61, 67, 583, 790
BtsIMutI	CAGTG	4 cut(s)	384, 509, 678, 685
Cac8I	GCNNGC	2 cut(s)	525, 760
CciI	TCATGA	1 cut(s)	864
CfoI	GCGC	3 cut(s)	525, 527, 1098
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	363, 985, 1042
CviAII	CATG	6 cut(s)	7, 14, 20, 865, 955, 1047
CviQI	GTAC	3 cut(s)	363, 985, 1042
DdeI	CTNAG	5 cut(s)	42, 69, 772, 891, 1143
DpnI	GATC	5 cut(s)	436, 569, 664, 710, 863
DpnII	GATC	5 cut(s)	434, 567, 662, 708, 861
Eco130I	CCWWGG	2 cut(s)	837, 1183
EcoT14I	CCWWGG	2 cut(s)	837, 1183
EcoT22I	ATGCAT	1 cut(s)	1088
ErhI	CCWWGG	2 cut(s)	837, 1183
FaeI	CATG	6 cut(s)	10, 17, 23, 868, 958, 1050
FaqI	GGGAC	2 cut(s)	58, 274
FatI	CATG	6 cut(s)	6, 13, 19, 864, 954, 1046
FauNDI	CATATG	1 cut(s)	1113
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	8 cut(s)	184, 207, 373, 640, 732, 888, 906, 918
FokI	GGATG	4 cut(s)	68, 74, 590, 797
Fsp4HI	GCNGC	8 cut(s)	184, 207, 373, 640, 732, 888, 906, 918
FspBI	CTAG	3 cut(s)	660, 1184, 1225
FspI	TGCGCA	1 cut(s)	1097
GlaI	GCGC	3 cut(s)	524, 526, 1097
GluI	GCNGC	8 cut(s)	184, 207, 373, 640, 732, 888, 906, 918
GsaI	CCCAGC	1 cut(s)	1164
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	3 cut(s)	525, 527, 1098
Hin1II	CATG	6 cut(s)	10, 17, 23, 868, 958, 1050
Hin6I	GCGC	3 cut(s)	523, 525, 1096
HinP1I	GCGC	3 cut(s)	523, 525, 1096
HinfI	GANTC	3 cut(s)	71, 616, 768
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	100, 1144, 1204
Hpy188I	TCNGA	6 cut(s)	140, 313, 724, 775, 861, 1170
Hpy188III	TCNNGA	6 cut(s)	259, 575, 602, 660, 865, 1123
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	353, 544, 694
HpyCH4III	ACNGT	2 cut(s)	304, 824
HpyCH4IV	ACGT	2 cut(s)	36, 268
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 29, 38, 92, 153, 592, 914, 1083
HpyF3I	CTNAG	5 cut(s)	42, 69, 772, 891, 1143
HpySE526I	ACGT	2 cut(s)	36, 268
Hsp92II	CATG	6 cut(s)	10, 17, 23, 868, 958, 1050
HspAI	GCGC	3 cut(s)	523, 525, 1096
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	5 cut(s)	434, 567, 662, 708, 861
LmnI	GCTCC	2 cut(s)	124, 1018
Lsp1109I	GCAGC	5 cut(s)	218, 626, 874, 892, 929
LweI	GCATC	8 cut(s)	52, 436, 874, 892, 1000, 1083, 1174, 1210
MaeI	CTAG	3 cut(s)	660, 1184, 1225
MaeII	ACGT	2 cut(s)	36, 268
MaeIII	GTNAC	6 cut(s)	177, 241, 415, 680, 930, 1210
MalI	GATC	5 cut(s)	436, 569, 664, 710, 863
MboI	GATC	5 cut(s)	434, 567, 662, 708, 861
MboII	GAAGA	2 cut(s)	601, 1015
MhlI	GDGCHC	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	1088
MseI	TTAA	6 cut(s)	222, 231, 318, 557, 875, 1107
MslI	CAYNNNNRTG	2 cut(s)	18, 1091
MspA1I	CMGCKG	2 cut(s)	731, 1208
MspI	CCGG	1 cut(s)	122
Mva1269I	GAATGC	3 cut(s)	919, 968, 1088
MvnI	CGCG	2 cut(s)	183, 525
MwoI	GCNNNNNNNGC	8 cut(s)	10, 29, 38, 92, 153, 592, 914, 1083
NdeI	CATATG	1 cut(s)	1113
NdeII	GATC	5 cut(s)	434, 567, 662, 708, 861
NlaIII	CATG	6 cut(s)	10, 17, 23, 868, 958, 1050
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	3 cut(s)	177, 680, 1210
NsbI	TGCGCA	1 cut(s)	1097
NsiI	ATGCAT	1 cut(s)	1088
NspI	RCATGY	1 cut(s)	17
PagI	TCATGA	1 cut(s)	864
PauI	GCGCGC	1 cut(s)	523
PctI	GAATGC	3 cut(s)	919, 968, 1088
PfeI	GAWTC	2 cut(s)	616, 768
PflFI	GACNNNGTC	1 cut(s)	70
PkrI	GCNGC	8 cut(s)	185, 208, 374, 641, 733, 889, 907, 919
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	269
PsiI	TTATAA	1 cut(s)	650
Psp1406I	AACGTT	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	1160
PsyI	GACNNNGTC	1 cut(s)	70
PteI	GCGCGC	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	1208
RsaI	GTAC	3 cut(s)	364, 986, 1043
RsaNI	GTAC	3 cut(s)	363, 985, 1042
RseI	CAYNNNNRTG	2 cut(s)	18, 1091
SaqAI	TTAA	6 cut(s)	222, 231, 318, 557, 875, 1107
SatI	GCNGC	8 cut(s)	184, 207, 373, 640, 732, 888, 906, 918
Sau3AI	GATC	5 cut(s)	434, 567, 662, 708, 861
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	8 cut(s)	52, 436, 874, 892, 1000, 1083, 1174, 1210
SfcI	CTRYAG	3 cut(s)	172, 340, 420
SmiMI	CAYNNNNRTG	2 cut(s)	18, 1091
SmlI	CTYRAG	2 cut(s)	602, 778
SmoI	CTYRAG	2 cut(s)	602, 778
SsiI	CCGC	6 cut(s)	86, 183, 372, 586, 731, 1016
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	3 cut(s)	660, 1184, 1225
StyI	CCWWGG	2 cut(s)	837, 1183
TaaI	ACNGT	2 cut(s)	304, 824
TaiI	ACGT	2 cut(s)	39, 271
TaqI	TCGA	2 cut(s)	430, 900
TatI	WGTACW	1 cut(s)	984
TauI	GCSGC	3 cut(s)	186, 375, 734
TfiI	GAWTC	2 cut(s)	616, 768
Tru1I	TTAA	6 cut(s)	222, 231, 318, 557, 875, 1107
Tru9I	TTAA	6 cut(s)	222, 231, 318, 557, 875, 1107
TscAI	CASTG	4 cut(s)	391, 516, 678, 685
TseFI	GTSAC	3 cut(s)	177, 680, 1210
TseI	GCWGC	5 cut(s)	206, 639, 887, 905, 917
Tsp45I	GTSAC	3 cut(s)	177, 680, 1210
TspDTI	ATGAA	5 cut(s)	114, 881, 971, 975, 1008
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	4 cut(s)	391, 516, 678, 685
Tth111I	GACNNNGTC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	101, 1178
XbaI	TCTAGA	1 cut(s)	659
XceI	RCATGY	1 cut(s)	17
XmaJI	CCTAGG	1 cut(s)	1183
XspI	CTAG	3 cut(s)	660, 1184, 1225
Zsp2I	ATGCAT	1 cut(s)	1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.