Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002972.1

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1871 .. 2896

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002972.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgataggcagcggcacaaaactactcggcgaggcagcaagaagtatggttaaagagattaaggagtatgtaacaggaaaggaagtcgggactatacgtgtttatggaatggctggtttcggcaagacagcagttgtgtcggaagttaatgacctcatagtgaatgactacagaagttgtgccccagaaggtacaaataacggcagtagatacactgaaaaccattttgacaaaattatatgggttactgtagagcatcgaggatcaactcaatcatctattgacaacttgcagaataaaattgcagagaaattacatattgatttgtgcataaagccactgggagtagagcgcgcagatacatatgaaagtgcattgaaggagttgagatttttgatcattctggatgatatgcggaagaagctgtctcttgagctaattgggattctaccaacgagggaaaatggctgcaaggttgtaatagtatctagatcacttccagtgttcagtgacatcaaaattgataagaaggttgagatcaaacctctttcagatacagcggcacgagaattgtttgagagggaagctggcattagattctcagacttgagggatgatactcaaactatggcagagaaaatggtagatgactgtgatagtttgcccttggctattggctttctggctcggatcatgaaagaattaaagagtgatgctgctgagagtgtcgatgctgcacggaatgcagcccttttgaagttacagagttctcacttggaaagcatgaatgaaaaggcattcgctcgtctaaagtacagctatgaaatattgaagaaagatgctccgcaatgtctcctgtattgtgccttgtacccatgtggtcattacattggtaaaaaagagctagtggagtattggttttgggatggtttattggatagaaacaagagagatggacggatagaagatatggtacaagcaagagacatactggatgagctcgtacggccttctggaaacagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_4 LRR_8 NB-ARC

Protein Analysis

341

Amino Acids

38.41

Weight (kDa)

5.9

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	4 cut(s)	12, 415, 560, 845
AclWI	GGATC	2 cut(s)	271, 698
AfaI	GTAC	5 cut(s)	193, 815, 872, 975, 1005
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	379, 757, 832
AluBI	AGCT	6 cut(s)	424, 436, 587, 819, 904, 1000
AluI	AGCT	6 cut(s)	424, 436, 587, 819, 904, 1000
Alw21I	GWGCWC	1 cut(s)	1002
Alw26I	GTCTC	3 cut(s)	432, 857, 978
AlwI	GGATC	2 cut(s)	271, 698
AoxI	GGCC	1 cut(s)	1007
ApeKI	GCWGC	6 cut(s)	9, 35, 468, 716, 734, 746
AspLEI	GCGC	2 cut(s)	354, 356
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	1002
BarI	GAAGNNNNNNTAC	2 cut(s)	957, 989
BauI	CACGAG	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	1002
BbvI	GCAGC	6 cut(s)	21, 47, 455, 703, 721, 758
BccI	CCATC	2 cut(s)	920, 947
BceAI	ACGGC	2 cut(s)	217, 1022
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	432, 857, 978
BfaI	CTAG	2 cut(s)	489, 905
BfmI	CTRYAG	2 cut(s)	169, 249
BisI	GCNGC	8 cut(s)	10, 13, 36, 469, 561, 717, 735, 747
BlsI	GCNGC	8 cut(s)	11, 14, 37, 470, 562, 718, 736, 748
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	4 cut(s)	265, 703, 721, 829
BmuI	ACTGGG	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	452, 628
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bse1I	ACTGG	3 cut(s)	345, 500, 996
Bse3DI	GCAATG	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	4 cut(s)	412, 619, 931, 1000
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	2 cut(s)	615, 711
BseNI	ACTGG	3 cut(s)	345, 500, 996
BsePI	GCGCGC	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	6 cut(s)	21, 47, 455, 703, 721, 758
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	1009
BsiHKAI	GWGCWC	1 cut(s)	1002
BsiWI	CGTACG	1 cut(s)	1003
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	3 cut(s)	432, 857, 978
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	2 cut(s)	748, 797
BsnI	GGCC	1 cut(s)	1009
Bsp1286I	GDGCHC	2 cut(s)	184, 1002
Bsp143I	GATC	5 cut(s)	263, 396, 491, 537, 690
BspACI	CCGC	4 cut(s)	12, 415, 560, 845
BspANI	GGCC	1 cut(s)	1009
BspCNI	CTCAG	2 cut(s)	614, 712
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	693
BspPI	GGATC	2 cut(s)	271, 698
BsrDI	GCAATG	1 cut(s)	854
BsrI	ACTGG	3 cut(s)	345, 500, 996
BssECI	CCNNGG	1 cut(s)	666
BssHII	GCGCGC	1 cut(s)	352
BssMI	GATC	5 cut(s)	263, 396, 491, 537, 690
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	250, 653, 1022
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	354, 589
BstDEI	CTNAG	2 cut(s)	601, 720
BstF5I	GGATG	4 cut(s)	412, 619, 931, 1000
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	354, 356
BstKTI	GATC	5 cut(s)	266, 399, 494, 540, 693
BstMAI	GTCTC	3 cut(s)	432, 857, 978
BstMBI	GATC	5 cut(s)	263, 396, 491, 537, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 743, 1006
BstSFI	CTRYAG	2 cut(s)	169, 249
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	21, 47, 455, 703, 721, 758
BsuRI	GGCC	1 cut(s)	1009
BtsCI	GGATG	4 cut(s)	412, 619, 931, 1000
BtsIMutI	CAGTG	4 cut(s)	213, 338, 507, 514
Cac8I	GCNNGC	2 cut(s)	354, 589
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	2 cut(s)	354, 356
Csp6I	GTAC	5 cut(s)	192, 814, 871, 974, 1004
CviAII	CATG	3 cut(s)	694, 784, 876
CviQI	GTAC	5 cut(s)	192, 814, 871, 974, 1004
DdeI	CTNAG	2 cut(s)	601, 720
DpnI	GATC	5 cut(s)	265, 398, 493, 539, 692
DpnII	GATC	5 cut(s)	263, 396, 491, 537, 690
Ecl136II	GAGCTC	1 cut(s)	1000
Eco130I	CCWWGG	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	1002
Eco53kI	GAGCTC	1 cut(s)	1000
EcoICRI	GAGCTC	1 cut(s)	1000
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	1002
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	3 cut(s)	697, 787, 879
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	3 cut(s)	693, 783, 875
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	8 cut(s)	10, 13, 36, 469, 561, 717, 735, 747
FokI	GGATG	4 cut(s)	419, 626, 938, 1007
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	8 cut(s)	10, 13, 36, 469, 561, 717, 735, 747
FspBI	CTAG	2 cut(s)	489, 905
GlaI	GCGC	2 cut(s)	353, 355
GluI	GCNGC	8 cut(s)	10, 13, 36, 469, 561, 717, 735, 747
HaeIII	GGCC	1 cut(s)	1009
HhaI	GCGC	2 cut(s)	354, 356
Hin1II	CATG	3 cut(s)	697, 787, 879
Hin6I	GCGC	2 cut(s)	352, 354
HinP1I	GCGC	2 cut(s)	352, 354
HinfI	GANTC	2 cut(s)	445, 597
Hpy188I	TCNGA	4 cut(s)	142, 553, 604, 690
Hpy188III	TCNNGA	6 cut(s)	88, 404, 431, 489, 694, 1014
HpyAV	CCTTC	4 cut(s)	182, 373, 523, 1020
HpyCH4III	ACNGT	3 cut(s)	250, 653, 1022
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	7 cut(s)	292, 305, 330, 374, 471, 737, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 743, 1006
HpyF3I	CTNAG	2 cut(s)	601, 720
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	697, 787, 879
HspAI	GCGC	2 cut(s)	352, 354
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	263, 396, 491, 537, 690
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	6 cut(s)	21, 47, 455, 703, 721, 758
LweI	GCATC	4 cut(s)	265, 703, 721, 829
MaeI	CTAG	2 cut(s)	489, 905
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	4 cut(s)	70, 244, 509, 759
MalI	GATC	5 cut(s)	265, 398, 493, 539, 692
MboI	GATC	5 cut(s)	263, 396, 491, 537, 690
MboII	GAAGA	3 cut(s)	430, 844, 977
MhlI	GDGCHC	2 cut(s)	184, 1002
MluCI	AATT	7 cut(s)	234, 300, 311, 438, 519, 569, 701
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	25, 164, 254, 450, 555, 573, 603
MseI	TTAA	4 cut(s)	51, 60, 147, 704
MspA1I	CMGCKG	2 cut(s)	12, 560
Mva1269I	GAATGC	2 cut(s)	748, 797
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	421, 743, 1006
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	5 cut(s)	263, 396, 491, 537, 690
NlaIII	CATG	3 cut(s)	697, 787, 879
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	693
PauI	GCGCGC	1 cut(s)	352
PctI	GAATGC	2 cut(s)	748, 797
PfeI	GAWTC	2 cut(s)	445, 597
Pfl23II	CGTACG	1 cut(s)	1003
PkrI	GCNGC	8 cut(s)	11, 14, 37, 470, 562, 718, 736, 748
Ppu21I	YACGTR	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	1002
PspLI	CGTACG	1 cut(s)	1003
PteI	GCGCGC	1 cut(s)	352
RsaI	GTAC	5 cut(s)	193, 815, 872, 975, 1005
RsaNI	GTAC	5 cut(s)	192, 814, 871, 974, 1004
SacI	GAGCTC	1 cut(s)	1002
SaqAI	TTAA	4 cut(s)	51, 60, 147, 704
SatI	GCNGC	8 cut(s)	10, 13, 36, 469, 561, 717, 735, 747
Sau3AI	GATC	5 cut(s)	263, 396, 491, 537, 690
SduI	GDGCHC	2 cut(s)	184, 1002
SfaNI	GCATC	4 cut(s)	265, 703, 721, 829
SfcI	CTRYAG	2 cut(s)	169, 249
SmlI	CTYRAG	2 cut(s)	431, 607
SmoI	CTYRAG	2 cut(s)	431, 607
Sse9I	AATT	7 cut(s)	234, 300, 311, 438, 519, 569, 701
SsiI	CCGC	4 cut(s)	12, 415, 560, 845
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	2 cut(s)	489, 905
SstI	GAGCTC	1 cut(s)	1002
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	3 cut(s)	250, 653, 1022
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	259, 729
TasI	AATT	7 cut(s)	234, 300, 311, 438, 519, 569, 701
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	2 cut(s)	15, 563
TfiI	GAWTC	2 cut(s)	445, 597
Tru1I	TTAA	4 cut(s)	51, 60, 147, 704
Tru9I	TTAA	4 cut(s)	51, 60, 147, 704
TscAI	CASTG	4 cut(s)	220, 345, 507, 514
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	6 cut(s)	9, 35, 468, 716, 734, 746
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	5 cut(s)	381, 710, 800, 804, 837
TspGWI	ACGGA	2 cut(s)	754, 973
TspRI	CASTG	4 cut(s)	220, 345, 507, 514
XbaI	TCTAGA	1 cut(s)	488
XspI	CTAG	2 cut(s)	489, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.