Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50280 |
| fragaria_vesca | FvH4_5g07010 FvH4_5g07010 |
| malus_domestica | MD06G1160200.v1.1 |
| prunus_persica | Prupe.5G160200_v2.0.a1 |
| pyrus_communis | pycom06g14320 |
| rosa_chinensis | RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671 |
| rosa_laevigata | RLG00000004435 RLG00000016595 RLG00000030786 |
| rosa_multiflora | Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006 |
| rosa_roxburghii | Rroxscaffold_157G00438490 Rroxscaffold_3G00263660 |
| rosa_rugosa | Rorug02G0116400 Rorug06G0510800 |
| rosa_samantha | Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900 |
| rosa_wichuraiana | Rw7G010220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 819, 1043, 1137 |
| Acc36I | ACCTGC | 1 cut(s) | 237 |
| AccI | GTMKAC | 1 cut(s) | 405 |
| AccIII | TCCGGA | 1 cut(s) | 907 |
| AciI | CCGC | 1 cut(s) | 1820 |
| AclWI | GGATC | 2 cut(s) | 278, 918 |
| AcoI | YGGCCR | 1 cut(s) | 955 |
| AcsI | RAATTY | 4 cut(s) | 475, 516, 778, 1730 |
| AcuI | CTGAAG | 2 cut(s) | 1206, 1728 |
| AcyI | GRCGYC | 1 cut(s) | 1008 |
| AfeI | AGCGCT | 1 cut(s) | 2132 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 646, 734 |
| AflIII | ACRYGT | 2 cut(s) | 920, 1349 |
| AjnI | CCWGG | 2 cut(s) | 321, 1970 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 573, 605, 1432, 1464 |
| Alw21I | GWGCWC | 2 cut(s) | 848, 1039 |
| Alw26I | GTCTC | 3 cut(s) | 312, 1120, 1196 |
| AlwI | GGATC | 2 cut(s) | 278, 918 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 419, 1488 |
| Aor13HI | TCCGGA | 1 cut(s) | 907 |
| Aor51HI | AGCGCT | 1 cut(s) | 2132 |
| AoxI | GGCC | 2 cut(s) | 637, 955 |
| ApeKI | GCWGC | 9 cut(s) | 134, 824, 1232, 1297, 1397, 1750, 1822, 1841, 2012 |
| ApoI | RAATTY | 4 cut(s) | 475, 516, 778, 1730 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 349, 381 |
| AseI | ATTAAT | 1 cut(s) | 2058 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 797 |
| AspA2I | CCTAGG | 1 cut(s) | 704 |
| AspLEI | GCGC | 1 cut(s) | 2133 |
| AspS9I | GGNCC | 2 cut(s) | 274, 637 |
| AsuHPI | GGTGA | 2 cut(s) | 605, 1669 |
| AvaII | GGWCC | 1 cut(s) | 274 |
| AvrII | CCTAGG | 1 cut(s) | 704 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 2 cut(s) | 848, 1039 |
| BbvI | GCAGC | 9 cut(s) | 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999 |
| BccI | CCATC | 4 cut(s) | 619, 667, 1673, 1831 |
| BceAI | ACGGC | 2 cut(s) | 223, 942 |
| BciT130I | CCWGG | 2 cut(s) | 323, 1972 |
| BclI | TGATCA | 1 cut(s) | 1629 |
| BcoDI | GTCTC | 3 cut(s) | 312, 1120, 1196 |
| BfaI | CTAG | 1 cut(s) | 705 |
| BfmI | CTRYAG | 2 cut(s) | 693, 1398 |
| BfoI | RGCGCY | 1 cut(s) | 2134 |
| BfuAI | ACCTGC | 1 cut(s) | 237 |
| BlnI | CCTAGG | 1 cut(s) | 704 |
| Bme1390I | CCNGG | 2 cut(s) | 323, 1972 |
| Bme18I | GGWCC | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 2 cut(s) | 274, 637 |
| BmiI | GGNNCC | 2 cut(s) | 276, 1329 |
| BmrFI | CCNGG | 2 cut(s) | 323, 1972 |
| BmsI | GCATC | 7 cut(s) | 438, 853, 1141, 1393, 1564, 1950, 1957 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1988 |
| BsaAI | YACGTR | 1 cut(s) | 2137 |
| BsaHI | GRCGYC | 1 cut(s) | 1008 |
| BsaI | GGTCTC | 2 cut(s) | 1120, 1196 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 704 |
| BsaWI | WCCGGW | 1 cut(s) | 907 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 16, 46, 142, 172 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 646, 734 |
| Bse1I | ACTGG | 1 cut(s) | 1575 |
| Bse3DI | GCAATG | 2 cut(s) | 891, 1506 |
| BseAI | TCCGGA | 1 cut(s) | 907 |
| BseBI | CCWGG | 2 cut(s) | 323, 1972 |
| BseDI | CCNNGG | 2 cut(s) | 321, 704 |
| BseGI | GGATG | 6 cut(s) | 678, 811, 1156, 1422, 1579, 2008 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 646, 734 |
| BseMI | GCAATG | 2 cut(s) | 891, 1506 |
| BseMII | CTCAG | 5 cut(s) | 127, 307, 489, 1191, 1272 |
| BseNI | ACTGG | 1 cut(s) | 1575 |
| BseRI | GAGGAG | 3 cut(s) | 133, 136, 284 |
| BseXI | GCAGC | 9 cut(s) | 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999 |
| BseYI | CCCAGC | 1 cut(s) | 1589 |
| BsgI | GTGCAG | 1 cut(s) | 113 |
| BshFI | GGCC | 2 cut(s) | 639, 957 |
| BsiHKAI | GWGCWC | 2 cut(s) | 848, 1039 |
| BsiSI | CCGG | 1 cut(s) | 908 |
| BslFI | GGGAC | 2 cut(s) | 1607, 1663 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 646, 734 |
| BsmAI | GTCTC | 3 cut(s) | 312, 1120, 1196 |
| BsmFI | GGGAC | 2 cut(s) | 1607, 1663 |
| BsmI | GAATGC | 1 cut(s) | 1789 |
| BsnI | GGCC | 2 cut(s) | 639, 957 |
| Bso31I | GGTCTC | 2 cut(s) | 1120, 1196 |
| Bsp1286I | GDGCHC | 2 cut(s) | 848, 1039 |
| Bsp13I | TCCGGA | 1 cut(s) | 907 |
| Bsp143I | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| BspACI | CCGC | 1 cut(s) | 1820 |
| BspANI | GGCC | 2 cut(s) | 639, 957 |
| BspCNI | CTCAG | 5 cut(s) | 126, 306, 490, 1192, 1273 |
| BspEI | TCCGGA | 1 cut(s) | 907 |
| BspHI | TCATGA | 1 cut(s) | 942 |
| BspLI | GGNNCC | 2 cut(s) | 276, 1329 |
| BspMAI | CTGCAG | 1 cut(s) | 1402 |
| BspMI | ACCTGC | 1 cut(s) | 237 |
| BspPI | GGATC | 2 cut(s) | 278, 918 |
| BspTNI | GGTCTC | 2 cut(s) | 1120, 1196 |
| BsrDI | GCAATG | 2 cut(s) | 891, 1506 |
| BsrI | ACTGG | 1 cut(s) | 1575 |
| BssECI | CCNNGG | 2 cut(s) | 321, 704 |
| BssMI | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| BssNI | GRCGYC | 1 cut(s) | 1008 |
| BssT1I | CCWWGG | 1 cut(s) | 704 |
| Bst2UI | CCWGG | 2 cut(s) | 323, 1972 |
| Bst4CI | ACNGT | 4 cut(s) | 365, 940, 1759, 2157 |
| Bst6I | CTCTTC | 4 cut(s) | 33, 261, 357, 1677 |
| BstACI | GRCGYC | 1 cut(s) | 1008 |
| BstBAI | YACGTR | 1 cut(s) | 2137 |
| BstC8I | GCNNGC | 4 cut(s) | 132, 344, 1490, 1587 |
| BstDEI | CTNAG | 9 cut(s) | 113, 293, 498, 789, 849, 1200, 1281, 1653, 1988 |
| BstF5I | GGATG | 6 cut(s) | 678, 811, 1156, 1422, 1579, 2008 |
| BstH2I | RGCGCY | 1 cut(s) | 2134 |
| BstHHI | GCGC | 1 cut(s) | 2133 |
| BstKTI | GATC | 4 cut(s) | 286, 913, 1632, 1887 |
| BstMAI | GTCTC | 3 cut(s) | 312, 1120, 1196 |
| BstMBI | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 636, 843, 890, 1403, 1508, 1595 |
| BstNI | CCWGG | 2 cut(s) | 323, 1972 |
| BstNSI | RCATGY | 3 cut(s) | 924, 1353, 1525 |
| BstSCI | CCNGG | 2 cut(s) | 321, 1970 |
| BstSFI | CTRYAG | 2 cut(s) | 693, 1398 |
| BstV1I | GCAGC | 9 cut(s) | 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| BsuRI | GGCC | 2 cut(s) | 639, 957 |
| BtsCI | GGATG | 6 cut(s) | 678, 811, 1156, 1422, 1579, 2008 |
| BtsIMutI | CAGTG | 3 cut(s) | 1366, 1489, 1764 |
| BveI | ACCTGC | 1 cut(s) | 237 |
| Cac8I | GCNNGC | 4 cut(s) | 132, 344, 1490, 1587 |
| CaiI | CAGNNNCTG | 2 cut(s) | 419, 1488 |
| CciI | TCATGA | 1 cut(s) | 942 |
| CfoI | GCGC | 1 cut(s) | 2133 |
| Cfr13I | GGNCC | 2 cut(s) | 274, 637 |
| CseI | GACGC | 2 cut(s) | 997, 1604 |
| DdeI | CTNAG | 9 cut(s) | 113, 293, 498, 789, 849, 1200, 1281, 1653, 1988 |
| DpnI | GATC | 4 cut(s) | 285, 912, 1631, 1886 |
| DpnII | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| DraI | TTTAAA | 1 cut(s) | 1854 |
| EaeI | YGGCCR | 1 cut(s) | 955 |
| Eam1104I | CTCTTC | 4 cut(s) | 33, 261, 357, 1677 |
| EarI | CTCTTC | 4 cut(s) | 33, 261, 357, 1677 |
| Eco130I | CCWWGG | 1 cut(s) | 704 |
| Eco31I | GGTCTC | 2 cut(s) | 1120, 1196 |
| Eco47I | GGWCC | 1 cut(s) | 274 |
| Eco47III | AGCGCT | 1 cut(s) | 2132 |
| Eco57I | CTGAAG | 2 cut(s) | 1206, 1728 |
| EcoO109I | RGGNCCY | 2 cut(s) | 274, 637 |
| EcoRII | CCWGG | 2 cut(s) | 321, 1970 |
| EcoT14I | CCWWGG | 1 cut(s) | 704 |
| EcoT22I | ATGCAT | 4 cut(s) | 1408, 1474, 1579, 1789 |
| ErhI | CCWWGG | 1 cut(s) | 704 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 426, 458, 1426, 1458 |
| FaqI | GGGAC | 2 cut(s) | 1607, 1663 |
| FauNDI | CATATG | 1 cut(s) | 1789 |
| FbaI | TGATCA | 1 cut(s) | 1629 |
| FblI | GTMKAC | 1 cut(s) | 405 |
| FokI | GGATG | 6 cut(s) | 685, 818, 1163, 1429, 1586, 2015 |
| FspBI | CTAG | 1 cut(s) | 705 |
| GlaI | GCGC | 1 cut(s) | 2132 |
| GsaI | CCCAGC | 1 cut(s) | 1593 |
| HaeII | RGCGCY | 1 cut(s) | 2134 |
| HaeIII | GGCC | 2 cut(s) | 639, 957 |
| HapII | CCGG | 1 cut(s) | 908 |
| HgaI | GACGC | 2 cut(s) | 997, 1604 |
| HhaI | GCGC | 1 cut(s) | 2133 |
| Hin1I | GRCGYC | 1 cut(s) | 1008 |
| Hin6I | GCGC | 1 cut(s) | 2131 |
| HinP1I | GCGC | 1 cut(s) | 2131 |
| HindIII | AAGCTT | 2 cut(s) | 1500, 1985 |
| HinfI | GANTC | 8 cut(s) | 297, 326, 410, 422, 602, 971, 1018, 1862 |
| HpaII | CCGG | 1 cut(s) | 908 |
| HphI | GGTGA | 2 cut(s) | 605, 1669 |
| Hpy166II | GTNNAC | 2 cut(s) | 406, 1955 |
| Hpy188I | TCNGA | 6 cut(s) | 66, 116, 296, 415, 499, 1729 |
| Hpy188III | TCNNGA | 7 cut(s) | 908, 943, 1022, 1212, 1676, 1907, 2113 |
| Hpy8I | GTNNAC | 2 cut(s) | 406, 1955 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyCH4III | ACNGT | 4 cut(s) | 365, 940, 1759, 2157 |
| HpyCH4IV | ACGT | 3 cut(s) | 334, 536, 2136 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 636, 843, 890, 1403, 1508, 1595 |
| HpyF3I | CTNAG | 9 cut(s) | 113, 293, 498, 789, 849, 1200, 1281, 1653, 1988 |
| HpySE526I | ACGT | 3 cut(s) | 334, 536, 2136 |
| Hsp92I | GRCGYC | 1 cut(s) | 1008 |
| HspAI | GCGC | 1 cut(s) | 2131 |
| Kpn2I | TCCGGA | 1 cut(s) | 907 |
| Ksp22I | TGATCA | 1 cut(s) | 1629 |
| Kzo9I | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| LmnI | GCTCC | 1 cut(s) | 1327 |
| Lsp1109I | GCAGC | 9 cut(s) | 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999 |
| LweI | GCATC | 7 cut(s) | 438, 853, 1141, 1393, 1564, 1950, 1957 |
| MaeI | CTAG | 1 cut(s) | 705 |
| MaeII | ACGT | 3 cut(s) | 334, 536, 2136 |
| MaeIII | GTNAC | 6 cut(s) | 697, 916, 1388, 1657, 1697, 1867 |
| MalI | GATC | 4 cut(s) | 285, 912, 1631, 1886 |
| MboI | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| MhlI | GDGCHC | 2 cut(s) | 848, 1039 |
| MlyI | GAGTC | 4 cut(s) | 320, 416, 611, 1027 |
| MmeI | TCCRAC | 3 cut(s) | 597, 1191, 1463 |
| Mph1103I | ATGCAT | 4 cut(s) | 1408, 1474, 1579, 1789 |
| MroI | TCCGGA | 1 cut(s) | 907 |
| MroXI | GAANNNNTTC | 1 cut(s) | 797 |
| MspA1I | CMGCKG | 1 cut(s) | 1825 |
| MspI | CCGG | 1 cut(s) | 908 |
| MspR9I | CCNGG | 2 cut(s) | 323, 1972 |
| Mva1269I | GAATGC | 1 cut(s) | 1789 |
| MvaI | CCWGG | 2 cut(s) | 323, 1972 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 636, 843, 890, 1403, 1508, 1595 |
| NdeI | CATATG | 1 cut(s) | 1789 |
| NdeII | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| NlaIV | GGNNCC | 2 cut(s) | 276, 1329 |
| NmuCI | GTSAC | 4 cut(s) | 916, 1388, 1657, 1697 |
| NsiI | ATGCAT | 4 cut(s) | 1408, 1474, 1579, 1789 |
| NspI | RCATGY | 3 cut(s) | 924, 1353, 1525 |
| PagI | TCATGA | 1 cut(s) | 942 |
| PciI | ACATGT | 2 cut(s) | 920, 1349 |
| PctI | GAATGC | 1 cut(s) | 1789 |
| PdmI | GAANNNNTTC | 1 cut(s) | 797 |
| PfeI | GAWTC | 4 cut(s) | 297, 410, 971, 1862 |
| PleI | GAGTC | 4 cut(s) | 320, 416, 610, 1026 |
| PpsI | GAGTC | 4 cut(s) | 320, 416, 610, 1026 |
| Ppu21I | YACGTR | 1 cut(s) | 2137 |
| PpuMI | RGGWCCY | 1 cut(s) | 274 |
| PscI | ACATGT | 2 cut(s) | 920, 1349 |
| PshBI | ATTAAT | 1 cut(s) | 2058 |
| PsiI | TTATAA | 3 cut(s) | 819, 1043, 1137 |
| Psp5II | RGGWCCY | 1 cut(s) | 274 |
| Psp6I | CCWGG | 2 cut(s) | 321, 1970 |
| PspFI | CCCAGC | 1 cut(s) | 1589 |
| PspGI | CCWGG | 2 cut(s) | 321, 1970 |
| PspN4I | GGNNCC | 2 cut(s) | 276, 1329 |
| PspPI | GGNCC | 2 cut(s) | 274, 637 |
| PspPPI | RGGWCCY | 1 cut(s) | 274 |
| PstI | CTGCAG | 1 cut(s) | 1402 |
| PstNI | CAGNNNCTG | 2 cut(s) | 419, 1488 |
| PvuII | CAGCTG | 1 cut(s) | 1825 |
| Sau3AI | GATC | 4 cut(s) | 283, 910, 1629, 1884 |
| Sau96I | GGNCC | 2 cut(s) | 274, 637 |
| SchI | GAGTC | 4 cut(s) | 320, 416, 611, 1027 |
| ScrFI | CCNGG | 2 cut(s) | 323, 1972 |
| SduI | GDGCHC | 2 cut(s) | 848, 1039 |
| SfaNI | GCATC | 7 cut(s) | 438, 853, 1141, 1393, 1564, 1950, 1957 |
| SfcI | CTRYAG | 2 cut(s) | 693, 1398 |
| SinI | GGWCC | 1 cut(s) | 274 |
| SsiI | CCGC | 1 cut(s) | 1820 |
| SspI | AATATT | 1 cut(s) | 1246 |
| SspMI | CTAG | 1 cut(s) | 705 |
| StyD4I | CCNGG | 2 cut(s) | 321, 1970 |
| StyI | CCWWGG | 1 cut(s) | 704 |
| TaaI | ACNGT | 4 cut(s) | 365, 940, 1759, 2157 |
| TaiI | ACGT | 3 cut(s) | 337, 539, 2139 |
| TaqI | TCGA | 3 cut(s) | 432, 510, 1877 |
| TauI | GCSGC | 1 cut(s) | 1822 |
| TfiI | GAWTC | 4 cut(s) | 297, 410, 971, 1862 |
| TscAI | CASTG | 3 cut(s) | 1366, 1489, 1764 |
| TseFI | GTSAC | 4 cut(s) | 916, 1388, 1657, 1697 |
| TseI | GCWGC | 9 cut(s) | 134, 824, 1232, 1297, 1397, 1750, 1822, 1841, 2012 |
| Tsp45I | GTSAC | 4 cut(s) | 916, 1388, 1657, 1697 |
| TspDTI | ATGAA | 8 cut(s) | 800, 963, 1010, 1220, 1433, 1457, 1625, 1796 |
| TspGWI | ACGGA | 1 cut(s) | 1889 |
| TspRI | CASTG | 3 cut(s) | 1366, 1489, 1764 |
| VpaK11BI | GGWCC | 1 cut(s) | 274 |
| VspI | ATTAAT | 1 cut(s) | 2058 |
| XapI | RAATTY | 4 cut(s) | 475, 516, 778, 1730 |
| XceI | RCATGY | 3 cut(s) | 924, 1353, 1525 |
| XmaJI | CCTAGG | 1 cut(s) | 704 |
| XmiI | GTMKAC | 1 cut(s) | 405 |
| XmnI | GAANNNNTTC | 1 cut(s) | 797 |
| XspI | CTAG | 1 cut(s) | 705 |
| Zsp2I | ATGCAT | 4 cut(s) | 1408, 1474, 1579, 1789 |