Prupe.5G160200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
14137855 .. 14141905
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G160200.1

Sequence Viewer

Length: 2160 bp
ATGGCTCTCATAAGCCAACACCTCACTCTTCCTCCACCATTTCCCTTCCTTCACAATCACTCTCCGAACTCTCCCTTCTCAAAGCCTTGCCTCTTTGTGTTCTCCAAAAACCTCAGACTTTTCTCTCTGCACGCAGCTTCCTCCTCCTCCACTCCCACTCCCACTTCTCACTCCTTAACCCCCATTTTCCTGCCCTTTCTCCAAGACGGCGAAGAAAAACCAGAAGACCTGCAAGAACTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGACCCAGATGATCCAATTCTCAGATTCTTCAAGTCTCGCAGTTCAACCCAGGACTCTCAACGTGAAGGCAAGCTCTCTCTTCAAAAGAACCGTCGCTCTGCTTGGCGTTTAGCTGACGATACCCAACTCGTAGACGAATCAGAAACTGACTCTGGCATCGAAGGAGTGCTTGAACAACAAAAGGAACAAGCCAGAGCATTGAATTTTAATTCAAGGGCGTTGTCTGAGGAAATTGTCGAAGAAATTTTGCAAAAAGCAAGGACGTTGCCTCAAAACTTGACATTGGGAGAGGTATTGGGAGGTTTTGAAGGAAGGGTTGGTGAGAAAGAGTCTGTGAAAGTGTTGGAGTTGATGGGCAAGGAGGGCCTTTTAATGGGTTGCTTGTATTTCTATGAGTGGATGGGTTTGCAGGAAACTTCTATAGTTACTCCTAGGGCGTGTTCAGTTTTGTTTCCTATGTTGGGGAGAGCTGGAATGGGCGATAAGTTGATGATTTTGTTTAGGAATTTACCAGCTAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCTTAATGTGCTCTAAGAGGTATGATGATGCTTGGGAGGTATATGAGGCAATGGAAGCAAATAATACCCTTCCGGATCATGTGACATGTTCAATTATGATTACTGTCATGAGAAAGGTTGGCCGTAGTGCAAAAGATTCATGGCAGTTCTTTGAGAGAATGAATAGGAAAGGCGTCAAATGGAGTCAAGAAGTTTTGGGTGCTCTTATAAAATCATTCTGTGATGAGGGGCTGAAAAGTGAAGCCCTTATCATTCAAGTAGAAATGGAGAAGAAAGGGGTCTCATCAAATGCCATTGTTTATAATACTTTAATGGATGCTTTTTGTAATTCCAACCAAGTTGAAGAAGCTGAAGGTCTCTTTGCTGAGATGAAATCAAGAGGTATCAAACCAACAGCAGCCACCTTCAATATTTTAATGAGTGCATACAGCAGAAAAATGCAGACTGAGATTGTTGAGAAGCTGCTGGTAGAAATGCAGGATATGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTATCAGTGCGTATGGGAGGCAGAAGAAGATGAGTGACATGGCTGCAGATGCATTTTTGAGGATGAAGAAAGCTGGTATAAGTCCAACTTCACATTCTTATACAGCTCTCATTCATGCATTTTCAGTCAGTGGCTGGCATGAGAAAGCTTACATTGCATTTGAGAACATGCAAAAAGAAGGCTTAAAGCCCTCCATAGAAACATATACTGCTTTACTGGATGCATTTAGGCGTGCTGGGGACGCACAGATGTTGATGAAAATATGGAAATTGATGATCAAAGAGAAGATTGAAGGGACTAAGGTGACATTTAACACTCTTCTTGATGGATTTGCTAAACAAGGTCACTATACTGAAGCAAGAGATGTGATTTCTGAATTTGGGAATATAGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGGGGAGGGCAACACTCAAAGTTGCCGCAGCTGTTGAAAGAGATGGCAGCTCTCAATTTAAAACCTGATTCTGTAACATACTCGACCATGATCTATGCCTATGTCCGTGTTCGTGATTTCAAAAGAGCATTTTTCTACCACAAGCAAATGGTAAAAAGTGGACAGATGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAAGCTGCAAGAAAGAACAAGAAGGACAGGAGTGCTATACTCGGTATAATTAATAGCAAAATGGGGTTGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAAAAGCGCTACGTGAGAACTGATAACTCACAGTGA

Protein Analysis

720

Amino Acids

81.69

Weight (kDa)

8.56

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 819, 1043, 1137
Acc36I ACCTGC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 1 cut(s) 1820
AclWI GGATC 2 cut(s) 278, 918
AcoI YGGCCR 1 cut(s) 955
AcsI RAATTY 4 cut(s) 475, 516, 778, 1730
AcuI CTGAAG 2 cut(s) 1206, 1728
AcyI GRCGYC 1 cut(s) 1008
AfeI AGCGCT 1 cut(s) 2132
AfiI CCNNNNNNNGG 2 cut(s) 646, 734
AflIII ACRYGT 2 cut(s) 920, 1349
AjnI CCWGG 2 cut(s) 321, 1970
AjuI GAANNNNNNNTTGG 4 cut(s) 573, 605, 1432, 1464
Alw21I GWGCWC 2 cut(s) 848, 1039
Alw26I GTCTC 3 cut(s) 312, 1120, 1196
AlwI GGATC 2 cut(s) 278, 918
AlwNI CAGNNNCTG 2 cut(s) 419, 1488
Aor13HI TCCGGA 1 cut(s) 907
Aor51HI AGCGCT 1 cut(s) 2132
AoxI GGCC 2 cut(s) 637, 955
ApeKI GCWGC 9 cut(s) 134, 824, 1232, 1297, 1397, 1750, 1822, 1841, 2012
ApoI RAATTY 4 cut(s) 475, 516, 778, 1730
ArsI GACNNNNNNTTYG 2 cut(s) 349, 381
AseI ATTAAT 1 cut(s) 2058
Asp700I GAANNNNTTC 1 cut(s) 797
AspA2I CCTAGG 1 cut(s) 704
AspLEI GCGC 1 cut(s) 2133
AspS9I GGNCC 2 cut(s) 274, 637
AsuHPI GGTGA 2 cut(s) 605, 1669
AvaII GGWCC 1 cut(s) 274
AvrII CCTAGG 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 848, 1039
BbvI GCAGC 9 cut(s) 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999
BccI CCATC 4 cut(s) 619, 667, 1673, 1831
BceAI ACGGC 2 cut(s) 223, 942
BciT130I CCWGG 2 cut(s) 323, 1972
BclI TGATCA 1 cut(s) 1629
BcoDI GTCTC 3 cut(s) 312, 1120, 1196
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 2 cut(s) 693, 1398
BfoI RGCGCY 1 cut(s) 2134
BfuAI ACCTGC 1 cut(s) 237
BlnI CCTAGG 1 cut(s) 704
Bme1390I CCNGG 2 cut(s) 323, 1972
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 274, 637
BmiI GGNNCC 2 cut(s) 276, 1329
BmrFI CCNGG 2 cut(s) 323, 1972
BmsI GCATC 7 cut(s) 438, 853, 1141, 1393, 1564, 1950, 1957
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 1988
BsaAI YACGTR 1 cut(s) 2137
BsaHI GRCGYC 1 cut(s) 1008
BsaI GGTCTC 2 cut(s) 1120, 1196
BsaJI CCNNGG 2 cut(s) 321, 704
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 734
Bse1I ACTGG 1 cut(s) 1575
Bse3DI GCAATG 2 cut(s) 891, 1506
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 2 cut(s) 323, 1972
BseDI CCNNGG 2 cut(s) 321, 704
BseGI GGATG 6 cut(s) 678, 811, 1156, 1422, 1579, 2008
BseLI CCNNNNNNNGG 2 cut(s) 646, 734
BseMI GCAATG 2 cut(s) 891, 1506
BseMII CTCAG 5 cut(s) 127, 307, 489, 1191, 1272
BseNI ACTGG 1 cut(s) 1575
BseRI GAGGAG 3 cut(s) 133, 136, 284
BseXI GCAGC 9 cut(s) 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999
BseYI CCCAGC 1 cut(s) 1589
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 2 cut(s) 639, 957
BsiHKAI GWGCWC 2 cut(s) 848, 1039
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 2 cut(s) 1607, 1663
BslI CCNNNNNNNGG 2 cut(s) 646, 734
BsmAI GTCTC 3 cut(s) 312, 1120, 1196
BsmFI GGGAC 2 cut(s) 1607, 1663
BsmI GAATGC 1 cut(s) 1789
BsnI GGCC 2 cut(s) 639, 957
Bso31I GGTCTC 2 cut(s) 1120, 1196
Bsp1286I GDGCHC 2 cut(s) 848, 1039
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 4 cut(s) 283, 910, 1629, 1884
BspACI CCGC 1 cut(s) 1820
BspANI GGCC 2 cut(s) 639, 957
BspCNI CTCAG 5 cut(s) 126, 306, 490, 1192, 1273
BspEI TCCGGA 1 cut(s) 907
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 276, 1329
BspMAI CTGCAG 1 cut(s) 1402
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 2 cut(s) 278, 918
BspTNI GGTCTC 2 cut(s) 1120, 1196
BsrDI GCAATG 2 cut(s) 891, 1506
BsrI ACTGG 1 cut(s) 1575
BssECI CCNNGG 2 cut(s) 321, 704
BssMI GATC 4 cut(s) 283, 910, 1629, 1884
BssNI GRCGYC 1 cut(s) 1008
BssT1I CCWWGG 1 cut(s) 704
Bst2UI CCWGG 2 cut(s) 323, 1972
Bst4CI ACNGT 4 cut(s) 365, 940, 1759, 2157
Bst6I CTCTTC 4 cut(s) 33, 261, 357, 1677
BstACI GRCGYC 1 cut(s) 1008
BstBAI YACGTR 1 cut(s) 2137
BstC8I GCNNGC 4 cut(s) 132, 344, 1490, 1587
BstDEI CTNAG 9 cut(s) 113, 293, 498, 789, 849, 1200, 1281, 1653, 1988
BstF5I GGATG 6 cut(s) 678, 811, 1156, 1422, 1579, 2008
BstH2I RGCGCY 1 cut(s) 2134
BstHHI GCGC 1 cut(s) 2133
BstKTI GATC 4 cut(s) 286, 913, 1632, 1887
BstMAI GTCTC 3 cut(s) 312, 1120, 1196
BstMBI GATC 4 cut(s) 283, 910, 1629, 1884
BstMWI GCNNNNNNNGC 6 cut(s) 636, 843, 890, 1403, 1508, 1595
BstNI CCWGG 2 cut(s) 323, 1972
BstNSI RCATGY 3 cut(s) 924, 1353, 1525
BstSCI CCNGG 2 cut(s) 321, 1970
BstSFI CTRYAG 2 cut(s) 693, 1398
BstV1I GCAGC 9 cut(s) 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 639, 957
BtsCI GGATG 6 cut(s) 678, 811, 1156, 1422, 1579, 2008
BtsIMutI CAGTG 3 cut(s) 1366, 1489, 1764
BveI ACCTGC 1 cut(s) 237
Cac8I GCNNGC 4 cut(s) 132, 344, 1490, 1587
CaiI CAGNNNCTG 2 cut(s) 419, 1488
CciI TCATGA 1 cut(s) 942
CfoI GCGC 1 cut(s) 2133
Cfr13I GGNCC 2 cut(s) 274, 637
CseI GACGC 2 cut(s) 997, 1604
DdeI CTNAG 9 cut(s) 113, 293, 498, 789, 849, 1200, 1281, 1653, 1988
DpnI GATC 4 cut(s) 285, 912, 1631, 1886
DpnII GATC 4 cut(s) 283, 910, 1629, 1884
DraI TTTAAA 1 cut(s) 1854
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 4 cut(s) 33, 261, 357, 1677
EarI CTCTTC 4 cut(s) 33, 261, 357, 1677
Eco130I CCWWGG 1 cut(s) 704
Eco31I GGTCTC 2 cut(s) 1120, 1196
Eco47I GGWCC 1 cut(s) 274
Eco47III AGCGCT 1 cut(s) 2132
Eco57I CTGAAG 2 cut(s) 1206, 1728
EcoO109I RGGNCCY 2 cut(s) 274, 637
EcoRII CCWGG 2 cut(s) 321, 1970
EcoT14I CCWWGG 1 cut(s) 704
EcoT22I ATGCAT 4 cut(s) 1408, 1474, 1579, 1789
ErhI CCWWGG 1 cut(s) 704
FalI AAGNNNNNCTT 4 cut(s) 426, 458, 1426, 1458
FaqI GGGAC 2 cut(s) 1607, 1663
FauNDI CATATG 1 cut(s) 1789
FbaI TGATCA 1 cut(s) 1629
FblI GTMKAC 1 cut(s) 405
FokI GGATG 6 cut(s) 685, 818, 1163, 1429, 1586, 2015
FspBI CTAG 1 cut(s) 705
GlaI GCGC 1 cut(s) 2132
GsaI CCCAGC 1 cut(s) 1593
HaeII RGCGCY 1 cut(s) 2134
HaeIII GGCC 2 cut(s) 639, 957
HapII CCGG 1 cut(s) 908
HgaI GACGC 2 cut(s) 997, 1604
HhaI GCGC 1 cut(s) 2133
Hin1I GRCGYC 1 cut(s) 1008
Hin6I GCGC 1 cut(s) 2131
HinP1I GCGC 1 cut(s) 2131
HindIII AAGCTT 2 cut(s) 1500, 1985
HinfI GANTC 8 cut(s) 297, 326, 410, 422, 602, 971, 1018, 1862
HpaII CCGG 1 cut(s) 908
HphI GGTGA 2 cut(s) 605, 1669
Hpy166II GTNNAC 2 cut(s) 406, 1955
Hpy188I TCNGA 6 cut(s) 66, 116, 296, 415, 499, 1729
Hpy188III TCNNGA 7 cut(s) 908, 943, 1022, 1212, 1676, 1907, 2113
Hpy8I GTNNAC 2 cut(s) 406, 1955
Hpy99I CGWCG 1 cut(s) 369
HpyCH4III ACNGT 4 cut(s) 365, 940, 1759, 2157
HpyCH4IV ACGT 3 cut(s) 334, 536, 2136
HpyF10VI GCNNNNNNNGC 6 cut(s) 636, 843, 890, 1403, 1508, 1595
HpyF3I CTNAG 9 cut(s) 113, 293, 498, 789, 849, 1200, 1281, 1653, 1988
HpySE526I ACGT 3 cut(s) 334, 536, 2136
Hsp92I GRCGYC 1 cut(s) 1008
HspAI GCGC 1 cut(s) 2131
Kpn2I TCCGGA 1 cut(s) 907
Ksp22I TGATCA 1 cut(s) 1629
Kzo9I GATC 4 cut(s) 283, 910, 1629, 1884
LmnI GCTCC 1 cut(s) 1327
Lsp1109I GCAGC 9 cut(s) 146, 811, 1244, 1284, 1384, 1762, 1834, 1853, 1999
LweI GCATC 7 cut(s) 438, 853, 1141, 1393, 1564, 1950, 1957
MaeI CTAG 1 cut(s) 705
MaeII ACGT 3 cut(s) 334, 536, 2136
MaeIII GTNAC 6 cut(s) 697, 916, 1388, 1657, 1697, 1867
MalI GATC 4 cut(s) 285, 912, 1631, 1886
MboI GATC 4 cut(s) 283, 910, 1629, 1884
MhlI GDGCHC 2 cut(s) 848, 1039
MlyI GAGTC 4 cut(s) 320, 416, 611, 1027
MmeI TCCRAC 3 cut(s) 597, 1191, 1463
Mph1103I ATGCAT 4 cut(s) 1408, 1474, 1579, 1789
MroI TCCGGA 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 1825
MspI CCGG 1 cut(s) 908
MspR9I CCNGG 2 cut(s) 323, 1972
Mva1269I GAATGC 1 cut(s) 1789
MvaI CCWGG 2 cut(s) 323, 1972
MwoI GCNNNNNNNGC 6 cut(s) 636, 843, 890, 1403, 1508, 1595
NdeI CATATG 1 cut(s) 1789
NdeII GATC 4 cut(s) 283, 910, 1629, 1884
NlaIV GGNNCC 2 cut(s) 276, 1329
NmuCI GTSAC 4 cut(s) 916, 1388, 1657, 1697
NsiI ATGCAT 4 cut(s) 1408, 1474, 1579, 1789
NspI RCATGY 3 cut(s) 924, 1353, 1525
PagI TCATGA 1 cut(s) 942
PciI ACATGT 2 cut(s) 920, 1349
PctI GAATGC 1 cut(s) 1789
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 4 cut(s) 297, 410, 971, 1862
PleI GAGTC 4 cut(s) 320, 416, 610, 1026
PpsI GAGTC 4 cut(s) 320, 416, 610, 1026
Ppu21I YACGTR 1 cut(s) 2137
PpuMI RGGWCCY 1 cut(s) 274
PscI ACATGT 2 cut(s) 920, 1349
PshBI ATTAAT 1 cut(s) 2058
PsiI TTATAA 3 cut(s) 819, 1043, 1137
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 321, 1970
PspFI CCCAGC 1 cut(s) 1589
PspGI CCWGG 2 cut(s) 321, 1970
PspN4I GGNNCC 2 cut(s) 276, 1329
PspPI GGNCC 2 cut(s) 274, 637
PspPPI RGGWCCY 1 cut(s) 274
PstI CTGCAG 1 cut(s) 1402
PstNI CAGNNNCTG 2 cut(s) 419, 1488
PvuII CAGCTG 1 cut(s) 1825
Sau3AI GATC 4 cut(s) 283, 910, 1629, 1884
Sau96I GGNCC 2 cut(s) 274, 637
SchI GAGTC 4 cut(s) 320, 416, 611, 1027
ScrFI CCNGG 2 cut(s) 323, 1972
SduI GDGCHC 2 cut(s) 848, 1039
SfaNI GCATC 7 cut(s) 438, 853, 1141, 1393, 1564, 1950, 1957
SfcI CTRYAG 2 cut(s) 693, 1398
SinI GGWCC 1 cut(s) 274
SsiI CCGC 1 cut(s) 1820
SspI AATATT 1 cut(s) 1246
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 321, 1970
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 4 cut(s) 365, 940, 1759, 2157
TaiI ACGT 3 cut(s) 337, 539, 2139
TaqI TCGA 3 cut(s) 432, 510, 1877
TauI GCSGC 1 cut(s) 1822
TfiI GAWTC 4 cut(s) 297, 410, 971, 1862
TscAI CASTG 3 cut(s) 1366, 1489, 1764
TseFI GTSAC 4 cut(s) 916, 1388, 1657, 1697
TseI GCWGC 9 cut(s) 134, 824, 1232, 1297, 1397, 1750, 1822, 1841, 2012
Tsp45I GTSAC 4 cut(s) 916, 1388, 1657, 1697
TspDTI ATGAA 8 cut(s) 800, 963, 1010, 1220, 1433, 1457, 1625, 1796
TspGWI ACGGA 1 cut(s) 1889
TspRI CASTG 3 cut(s) 1366, 1489, 1764
VpaK11BI GGWCC 1 cut(s) 274
VspI ATTAAT 1 cut(s) 2058
XapI RAATTY 4 cut(s) 475, 516, 778, 1730
XceI RCATGY 3 cut(s) 924, 1353, 1525
XmaJI CCTAGG 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 1 cut(s) 705
Zsp2I ATGCAT 4 cut(s) 1408, 1474, 1579, 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.