Rorug06G0510800

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
62556253 .. 62560052
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0510800.1

Sequence Viewer

Length: 1440 bp
ATGGACATGGAGTCCCAAAACCACCAAATCCCTCCAACCCAAAACCCTCCTCATCCCATTCCCGAGTCATCGCCACAACCCAGTTTTCCGGCCAAACTTGCCCACCAGCTGAAATTCAATCTCATTTTCAGGTCCAAATGGGCCGAGTTGAACGGTGCAATGGGCGACTTAGGCACCTACATCCCAATCGTAGTGGCCTTAACACTAGCCAGAGACTTGAACTTGGGCACCACCTTGATCTTCACCGGAATCTACAACATCATCACCGGAGCCATCTACGGCGTTCCCATGCCGGTCCAACCTATGAAGGCCATTGCCGCCACAGCCCTGGCCAACCCGGATTTCGGCATCCCCGAAATCATGGCCGCCGGAATCCTAACCGGTAGCACCCTCATCGTTTTGGGTGCCACCGGTTTGATGCAACTGGTCTATAAGTTGATCCCTTTGTGTGTGGTCAGGGGAGTTCAACTGGCACAGGGATTGTCATTTGCGTTAACCGCGGTCAAGTACATTAAGAAGGTGCAAAACTTGCCCAAATCCAAAGCCATGGGGGAGAGGCACTGGTTTGGGTTGGATGGTTTGGTGTTGGCTATTGTTTGTCTTTGTTTCATAGTCATTGTTAATGGTGCAGGTGAGGAATATCATCCAGTGAGGGAAGGTGAAGTTGAGGTTGAAGAAGAAAGACCTAGCAGAAAAAAGAGGTGGAGGAAAATCATAGCTTCACTCCCTTCGGCTTTTTTAATTTTTGTGTTGGGTGTGATTCTGGCTTTTATAAGAAAGCCAAAAGTTGTGCATGAAATTAAATTCGGGCCATCTCCTATGGAGGTTGTGAAGATTAGTAGGCATGCATGGAAAGATGGGTTCATCAAAGGGACAATTCCACAACTGCCCCTGTCAATATTGAACTCAGTGATTGCTGTGTGCAAATTCTCCTCTGATCTTTTCCCAGATAAAGATTTCTCTCCCACATCAATTTCGATCACGGTTGGGCTGATGAATGTGGTGGGTAGTTGGTTCGGAGCCATGCCCAGTTGTCACGGGGCCGGCGGGTTGGCCGGCCAGTACAAGTTTGGGGGGAGGAGTGGAGGGTGTGTGGCACTACTAGGGTCAGCCAAATTGGTGTTGGGTTTGGCTTTAGGGACTTCTCTGGTGACCATTTTGAACCAATTCCCAGTTGGGGTTTTGGGGGTGTTGCTCTTGTTTGCTGGGATTGAACTGGCTATGTGTGCTAGGGACATGCATACTAAAGAAGAGTCCTTTGTGATGCTTATTTGCACTGCTGTTTCACTAGTGGGTTCGAGTGCAGCACTAGGATTTGTGGTGGGGATGGGTGTGTATGTTCTACTTTGGCTGAGAAAGTTGGGCTGCAAAGACAAACCTAATTGGATGATATGGAAGCATGGTCGAACCATAGTAGAAAATTATGATCACAACCCATGA

Protein Analysis

479

Amino Acids

51.73

Weight (kDa)

9.23

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_MOT1 PF16983 48 - 163 2.3e-26 Molybdate transporter of MFS superfamily
MFS_MOT1 PF16983 288 - 406 4e-35 Molybdate transporter of MFS superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 773
AarI CACCTGC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 620
AccB1I GGYRCC 3 cut(s) 173, 227, 404
AccII CGCG 1 cut(s) 500
AciI CCGC 5 cut(s) 318, 366, 498, 500, 1047
AclWI GGATC 1 cut(s) 433
AcoI YGGCCR 5 cut(s) 90, 330, 363, 1053, 1057
AcsI RAATTY 3 cut(s) 113, 803, 926
AfaI GTAC 2 cut(s) 509, 1064
AfiI CCNNNNNNNGG 2 cut(s) 344, 1177
AgeI ACCGGT 2 cut(s) 380, 410
AgsI TTSAA 8 cut(s) 118, 151, 220, 467, 674, 904, 1162, 1214
AhdI GACNNNNNGTC 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 1288
AjnI CCWGG 1 cut(s) 327
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 109, 719
AluI AGCT 2 cut(s) 109, 719
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 1304, 1365
ApoI RAATTY 3 cut(s) 113, 803, 926
AsiGI ACCGGT 2 cut(s) 380, 410
Asp700I GAANNNNTTC 1 cut(s) 1166
AspS9I GGNCC 5 cut(s) 132, 141, 295, 809, 1041
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 5 cut(s) 235, 256, 644, 671, 1162
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 132, 295
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 3 cut(s) 173, 227, 404
BbvI GCAGC 2 cut(s) 1316, 1352
BccI CCATC 5 cut(s) 281, 569, 820, 851, 1321
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 1426
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 207
BcuI ACTAGT 1 cut(s) 1288
BfaI CTAG 6 cut(s) 206, 687, 1103, 1230, 1289, 1310
BfuAI ACCTGC 1 cut(s) 620
BisI GCNGC 4 cut(s) 318, 366, 1305, 1366
BlsI GCNGC 4 cut(s) 319, 367, 1306, 1367
Bme1390I CCNGG 2 cut(s) 329, 338
Bme18I GGWCC 2 cut(s) 132, 295
BmeRI GACNNNNNGTC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 5 cut(s) 132, 141, 295, 809, 1041
BmiI GGNNCC 6 cut(s) 175, 229, 271, 406, 1021, 1042
BmrFI CCNGG 2 cut(s) 329, 338
BmrI ACTGGG 3 cut(s) 75, 1023, 1166
BmsI GCATC 3 cut(s) 357, 408, 1254
BmuI ACTGGG 3 cut(s) 75, 1023, 1166
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 327, 498, 546
BsaWI WCCGGW 4 cut(s) 245, 266, 380, 410
BsaXI ACNNNNNCTCC 2 cut(s) 1077, 1107
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 1177
Bse118I RCCGGY 5 cut(s) 292, 380, 410, 1043, 1055
Bse1I ACTGG 9 cut(s) 81, 429, 474, 566, 647, 1029, 1060, 1172, 1221
Bse3DI GCAATG 2 cut(s) 165, 312
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 327, 498, 546
BseGI GGATG 7 cut(s) 52, 180, 348, 580, 643, 1332, 1392
BseLI CCNNNNNNNGG 2 cut(s) 344, 1177
BseMI GCAATG 2 cut(s) 165, 312
BseMII CTCAG 2 cut(s) 921, 1343
BseNI ACTGG 9 cut(s) 81, 429, 474, 566, 647, 1029, 1060, 1172, 1221
BseRI GAGGAG 3 cut(s) 39, 922, 1093
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 2 cut(s) 1316, 1352
BseYI CCCAGC 1 cut(s) 1205
BsgI GTGCAG 2 cut(s) 648, 1323
Bsh1236I CGCG 1 cut(s) 500
BshNI GGYRCC 3 cut(s) 173, 227, 404
BshTI ACCGGT 2 cut(s) 380, 410
BsiHKCI CYCGRG 1 cut(s) 62
BslFI GGGAC 3 cut(s) 886, 1153, 1247
BslI CCNNNNNNNGG 2 cut(s) 344, 1177
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 3 cut(s) 886, 1153, 1247
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 5 cut(s) 237, 438, 937, 978, 1426
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 5 cut(s) 318, 366, 498, 500, 1047
BspCNI CTCAG 2 cut(s) 920, 1344
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 6 cut(s) 175, 229, 271, 406, 1021, 1042
BspMI ACCTGC 1 cut(s) 620
BspPI GGATC 1 cut(s) 433
BspT107I GGYRCC 3 cut(s) 173, 227, 404
BsrDI GCAATG 2 cut(s) 165, 312
BsrFI RCCGGY 5 cut(s) 292, 380, 410, 1043, 1055
BsrI ACTGG 9 cut(s) 81, 429, 474, 566, 647, 1029, 1060, 1172, 1221
BssAI RCCGGY 5 cut(s) 292, 380, 410, 1043, 1055
BssECI CCNNGG 3 cut(s) 327, 498, 546
BssMI GATC 5 cut(s) 237, 438, 937, 978, 1426
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 155, 985
Bst6I CTCTTC 1 cut(s) 1245
BstAPI GCANNNNNTGC 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 846, 1045, 1057
BstDEI CTNAG 3 cut(s) 169, 907, 1352
BstDSI CCRYGG 2 cut(s) 498, 546
BstEII GGTNACC 1 cut(s) 1150
BstF5I GGATG 7 cut(s) 52, 180, 348, 580, 643, 1332, 1392
BstFNI CGCG 1 cut(s) 500
BstKTI GATC 5 cut(s) 240, 441, 940, 981, 1429
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 5 cut(s) 237, 438, 937, 978, 1426
BstMWI GCNNNNNNNGC 7 cut(s) 98, 171, 317, 323, 497, 529, 1226
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 848, 1240
BstPI GGTNACC 1 cut(s) 1150
BstSCI CCNGG 2 cut(s) 327, 336
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 1316, 1352
BstXI CCANNNNNNTGG 2 cut(s) 328, 547
BtgI CCRYGG 2 cut(s) 498, 546
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 7 cut(s) 52, 180, 348, 580, 643, 1332, 1392
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 4 cut(s) 559, 654, 915, 1275
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 3 cut(s) 846, 1045, 1057
Cfr10I RCCGGY 5 cut(s) 292, 380, 410, 1043, 1055
Cfr13I GGNCC 5 cut(s) 132, 141, 295, 809, 1041
Cfr42I CCGCGG 1 cut(s) 501
Csp6I GTAC 2 cut(s) 508, 1063
CspAI ACCGGT 2 cut(s) 380, 410
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviQI GTAC 2 cut(s) 508, 1063
DdeI CTNAG 3 cut(s) 169, 907, 1352
DpnI GATC 5 cut(s) 239, 440, 939, 980, 1428
DpnII GATC 5 cut(s) 237, 438, 937, 978, 1426
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 5 cut(s) 90, 330, 363, 1053, 1057
Eam1104I CTCTTC 1 cut(s) 1245
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 1245
Eco130I CCWWGG 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 132, 295
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 1150
EcoO65I GGTNACC 1 cut(s) 1150
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 546
EcoT22I ATGCAT 2 cut(s) 850, 1242
ErhI CCWWGG 1 cut(s) 546
FaqI GGGAC 3 cut(s) 886, 1153, 1247
FauI CCCGC 1 cut(s) 1040
FbaI TGATCA 1 cut(s) 1426
Fnu4HI GCNGC 4 cut(s) 318, 366, 1305, 1366
FokI GGATG 7 cut(s) 39, 167, 335, 587, 630, 1339, 1399
FseI GGCCGGCC 1 cut(s) 1059
Fsp4HI GCNGC 4 cut(s) 318, 366, 1305, 1366
FspBI CTAG 6 cut(s) 206, 687, 1103, 1230, 1289, 1310
GluI GCNGC 4 cut(s) 318, 366, 1305, 1366
GsaI CCCAGC 1 cut(s) 1209
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 6 cut(s) 11, 65, 249, 372, 760, 1253
HpaI GTTAAC 1 cut(s) 495
HphI GGTGA 5 cut(s) 235, 256, 644, 671, 1162
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 2 cut(s) 937, 1019
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 495
HpyAV CCTTC 4 cut(s) 301, 511, 650, 738
HpyCH4III ACNGT 2 cut(s) 155, 985
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 171, 317, 323, 497, 529, 1226
HpyF3I CTNAG 3 cut(s) 169, 907, 1352
KroI GCCGGC 2 cut(s) 1043, 1055
KroNI GCCGGC 2 cut(s) 1045, 1057
Ksp22I TGATCA 1 cut(s) 1426
KspAI GTTAAC 1 cut(s) 495
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 5 cut(s) 237, 438, 937, 978, 1426
LmnI GCTCC 2 cut(s) 269, 1019
Lsp1109I GCAGC 2 cut(s) 1316, 1352
LweI GCATC 3 cut(s) 357, 408, 1254
MaeI CTAG 6 cut(s) 206, 687, 1103, 1230, 1289, 1310
MaeIII GTNAC 2 cut(s) 1034, 1150
MalI GATC 5 cut(s) 239, 440, 939, 980, 1428
MboI GATC 5 cut(s) 237, 438, 937, 978, 1426
MboII GAAGA 5 cut(s) 232, 686, 689, 844, 1262
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 332
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 3 cut(s) 20, 74, 1262
MmeI TCCRAC 3 cut(s) 59, 322, 552
Mox20I TGGCCA 1 cut(s) 332
Mph1103I ATGCAT 2 cut(s) 850, 1242
MroNI GCCGGC 2 cut(s) 1043, 1055
MroXI GAANNNNTTC 1 cut(s) 1166
MscI TGGCCA 1 cut(s) 332
MseI TTAA 6 cut(s) 200, 494, 513, 621, 740, 801
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 2 cut(s) 109, 500
MspR9I CCNGG 2 cut(s) 329, 338
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 7 cut(s) 98, 171, 317, 323, 497, 529, 1226
NaeI GCCGGC 2 cut(s) 1045, 1057
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 237, 438, 937, 978, 1426
NgoMIV GCCGGC 2 cut(s) 1043, 1055
NlaIV GGNNCC 6 cut(s) 175, 229, 271, 406, 1021, 1042
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 1034, 1150
NsiI ATGCAT 2 cut(s) 850, 1242
NspI RCATGY 2 cut(s) 848, 1240
PaeI GCATGC 1 cut(s) 848
PaqCI CACCTGC 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 2 cut(s) 1045, 1057
PdmI GAANNNNTTC 1 cut(s) 1166
PfeI GAWTC 3 cut(s) 249, 372, 760
PinAI ACCGGT 2 cut(s) 380, 410
PkrI GCNGC 4 cut(s) 319, 367, 1306, 1367
PleI GAGTC 3 cut(s) 19, 73, 1261
PpsI GAGTC 3 cut(s) 19, 73, 1261
PsiI TTATAA 1 cut(s) 773
Psp6I CCWGG 1 cut(s) 327
PspEI GGTNACC 1 cut(s) 1150
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 6 cut(s) 175, 229, 271, 406, 1021, 1042
PspPI GGNCC 5 cut(s) 132, 141, 295, 809, 1041
PvuII CAGCTG 1 cut(s) 109
RigI GGCCGGCC 1 cut(s) 1059
RsaI GTAC 2 cut(s) 509, 1064
RsaNI GTAC 2 cut(s) 508, 1063
SacII CCGCGG 1 cut(s) 501
SaqAI TTAA 6 cut(s) 200, 494, 513, 621, 740, 801
SatI GCNGC 4 cut(s) 318, 366, 1305, 1366
Sau3AI GATC 5 cut(s) 237, 438, 937, 978, 1426
Sau96I GGNCC 5 cut(s) 132, 141, 295, 809, 1041
SchI GAGTC 3 cut(s) 20, 74, 1262
ScrFI CCNGG 2 cut(s) 329, 338
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 3 cut(s) 357, 408, 1254
Sfr303I CCGCGG 1 cut(s) 501
SgrBI CCGCGG 1 cut(s) 501
SinI GGWCC 2 cut(s) 132, 295
SpeI ACTAGT 1 cut(s) 1288
SphI GCATGC 1 cut(s) 848
SsiI CCGC 5 cut(s) 318, 366, 498, 500, 1047
SspI AATATT 1 cut(s) 900
SspMI CTAG 6 cut(s) 206, 687, 1103, 1230, 1289, 1310
StyD4I CCNGG 2 cut(s) 327, 336
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 155, 985
TaqI TCGA 3 cut(s) 977, 1298, 1405
TatI WGTACW 2 cut(s) 507, 1062
TauI GCSGC 2 cut(s) 320, 368
TfiI GAWTC 3 cut(s) 249, 372, 760
Tru1I TTAA 6 cut(s) 200, 494, 513, 621, 740, 801
Tru9I TTAA 6 cut(s) 200, 494, 513, 621, 740, 801
TscAI CASTG 4 cut(s) 566, 654, 915, 1282
TseFI GTSAC 2 cut(s) 1034, 1150
TseI GCWGC 2 cut(s) 1304, 1365
Tsp45I GTSAC 2 cut(s) 1034, 1150
TspDTI ATGAA 5 cut(s) 320, 598, 810, 853, 1010
TspRI CASTG 4 cut(s) 566, 654, 915, 1282
VpaK11BI GGWCC 2 cut(s) 132, 295
XapI RAATTY 3 cut(s) 113, 803, 926
XceI RCATGY 2 cut(s) 848, 1240
XcmI CCANNNNNNNNNTGG 3 cut(s) 1067, 1120, 1172
XmnI GAANNNNTTC 1 cut(s) 1166
XspI CTAG 6 cut(s) 206, 687, 1103, 1230, 1289, 1310
Zsp2I ATGCAT 2 cut(s) 850, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.