Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50280 |
| fragaria_vesca | FvH4_5g07010 FvH4_5g07010 |
| malus_domestica | MD06G1160200.v1.1 |
| prunus_persica | Prupe.5G160200_v2.0.a1 |
| pyrus_communis | pycom06g14320 |
| rosa_chinensis | RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671 |
| rosa_laevigata | RLG00000004435 RLG00000016595 RLG00000030786 |
| rosa_multiflora | Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006 |
| rosa_roxburghii | Rroxscaffold_157G00438490 Rroxscaffold_3G00263660 |
| rosa_rugosa | Rorug02G0116400 Rorug06G0510800 |
| rosa_samantha | Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900 |
| rosa_wichuraiana | Rw7G010220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 773 |
| AarI | CACCTGC | 1 cut(s) | 620 |
| Acc36I | ACCTGC | 1 cut(s) | 620 |
| AccB1I | GGYRCC | 3 cut(s) | 173, 227, 404 |
| AccII | CGCG | 1 cut(s) | 500 |
| AciI | CCGC | 5 cut(s) | 318, 366, 498, 500, 1047 |
| AclWI | GGATC | 1 cut(s) | 433 |
| AcoI | YGGCCR | 5 cut(s) | 90, 330, 363, 1053, 1057 |
| AcsI | RAATTY | 3 cut(s) | 113, 803, 926 |
| AfaI | GTAC | 2 cut(s) | 509, 1064 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 344, 1177 |
| AgeI | ACCGGT | 2 cut(s) | 380, 410 |
| AgsI | TTSAA | 8 cut(s) | 118, 151, 220, 467, 674, 904, 1162, 1214 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 10 |
| AhlI | ACTAGT | 1 cut(s) | 1288 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 326, 358 |
| AluBI | AGCT | 2 cut(s) | 109, 719 |
| AluI | AGCT | 2 cut(s) | 109, 719 |
| Alw26I | GTCTC | 1 cut(s) | 207 |
| AlwI | GGATC | 1 cut(s) | 433 |
| Ama87I | CYCGRG | 1 cut(s) | 62 |
| ApeKI | GCWGC | 2 cut(s) | 1304, 1365 |
| ApoI | RAATTY | 3 cut(s) | 113, 803, 926 |
| AsiGI | ACCGGT | 2 cut(s) | 380, 410 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1166 |
| AspS9I | GGNCC | 5 cut(s) | 132, 141, 295, 809, 1041 |
| AsuC2I | CCSGG | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 5 cut(s) | 235, 256, 644, 671, 1162 |
| AvaI | CYCGRG | 1 cut(s) | 62 |
| AvaII | GGWCC | 2 cut(s) | 132, 295 |
| BaeGI | GKGCMC | 1 cut(s) | 230 |
| BalI | TGGCCA | 1 cut(s) | 332 |
| BanI | GGYRCC | 3 cut(s) | 173, 227, 404 |
| BbvI | GCAGC | 2 cut(s) | 1316, 1352 |
| BccI | CCATC | 5 cut(s) | 281, 569, 820, 851, 1321 |
| BceAI | ACGGC | 1 cut(s) | 295 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 376, 410 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BclI | TGATCA | 1 cut(s) | 1426 |
| BcnI | CCSGG | 1 cut(s) | 338 |
| BcoDI | GTCTC | 1 cut(s) | 207 |
| BcuI | ACTAGT | 1 cut(s) | 1288 |
| BfaI | CTAG | 6 cut(s) | 206, 687, 1103, 1230, 1289, 1310 |
| BfuAI | ACCTGC | 1 cut(s) | 620 |
| BisI | GCNGC | 4 cut(s) | 318, 366, 1305, 1366 |
| BlsI | GCNGC | 4 cut(s) | 319, 367, 1306, 1367 |
| Bme1390I | CCNGG | 2 cut(s) | 329, 338 |
| Bme18I | GGWCC | 2 cut(s) | 132, 295 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 10 |
| BmeT110I | CYCGRG | 1 cut(s) | 62 |
| BmgT120I | GGNCC | 5 cut(s) | 132, 141, 295, 809, 1041 |
| BmiI | GGNNCC | 6 cut(s) | 175, 229, 271, 406, 1021, 1042 |
| BmrFI | CCNGG | 2 cut(s) | 329, 338 |
| BmrI | ACTGGG | 3 cut(s) | 75, 1023, 1166 |
| BmsI | GCATC | 3 cut(s) | 357, 408, 1254 |
| BmuI | ACTGGG | 3 cut(s) | 75, 1023, 1166 |
| BpuMI | CCSGG | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 3 cut(s) | 327, 498, 546 |
| BsaWI | WCCGGW | 4 cut(s) | 245, 266, 380, 410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1077, 1107 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 344, 1177 |
| Bse118I | RCCGGY | 5 cut(s) | 292, 380, 410, 1043, 1055 |
| Bse1I | ACTGG | 9 cut(s) | 81, 429, 474, 566, 647, 1029, 1060, 1172, 1221 |
| Bse3DI | GCAATG | 2 cut(s) | 165, 312 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseDI | CCNNGG | 3 cut(s) | 327, 498, 546 |
| BseGI | GGATG | 7 cut(s) | 52, 180, 348, 580, 643, 1332, 1392 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 344, 1177 |
| BseMI | GCAATG | 2 cut(s) | 165, 312 |
| BseMII | CTCAG | 2 cut(s) | 921, 1343 |
| BseNI | ACTGG | 9 cut(s) | 81, 429, 474, 566, 647, 1029, 1060, 1172, 1221 |
| BseRI | GAGGAG | 3 cut(s) | 39, 922, 1093 |
| BseSI | GKGCMC | 1 cut(s) | 230 |
| BseXI | GCAGC | 2 cut(s) | 1316, 1352 |
| BseYI | CCCAGC | 1 cut(s) | 1205 |
| BsgI | GTGCAG | 2 cut(s) | 648, 1323 |
| Bsh1236I | CGCG | 1 cut(s) | 500 |
| BshNI | GGYRCC | 3 cut(s) | 173, 227, 404 |
| BshTI | ACCGGT | 2 cut(s) | 380, 410 |
| BsiHKCI | CYCGRG | 1 cut(s) | 62 |
| BslFI | GGGAC | 3 cut(s) | 886, 1153, 1247 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 344, 1177 |
| BsmAI | GTCTC | 1 cut(s) | 207 |
| BsmFI | GGGAC | 3 cut(s) | 886, 1153, 1247 |
| BsoBI | CYCGRG | 1 cut(s) | 62 |
| Bsp1286I | GDGCHC | 1 cut(s) | 230 |
| Bsp143I | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspACI | CCGC | 5 cut(s) | 318, 366, 498, 500, 1047 |
| BspCNI | CTCAG | 2 cut(s) | 920, 1344 |
| BspFNI | CGCG | 1 cut(s) | 500 |
| BspLI | GGNNCC | 6 cut(s) | 175, 229, 271, 406, 1021, 1042 |
| BspMI | ACCTGC | 1 cut(s) | 620 |
| BspPI | GGATC | 1 cut(s) | 433 |
| BspT107I | GGYRCC | 3 cut(s) | 173, 227, 404 |
| BsrDI | GCAATG | 2 cut(s) | 165, 312 |
| BsrFI | RCCGGY | 5 cut(s) | 292, 380, 410, 1043, 1055 |
| BsrI | ACTGG | 9 cut(s) | 81, 429, 474, 566, 647, 1029, 1060, 1172, 1221 |
| BssAI | RCCGGY | 5 cut(s) | 292, 380, 410, 1043, 1055 |
| BssECI | CCNNGG | 3 cut(s) | 327, 498, 546 |
| BssMI | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| BssT1I | CCWWGG | 1 cut(s) | 546 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| Bst4CI | ACNGT | 2 cut(s) | 155, 985 |
| Bst6I | CTCTTC | 1 cut(s) | 1245 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 3 cut(s) | 846, 1045, 1057 |
| BstDEI | CTNAG | 3 cut(s) | 169, 907, 1352 |
| BstDSI | CCRYGG | 2 cut(s) | 498, 546 |
| BstEII | GGTNACC | 1 cut(s) | 1150 |
| BstF5I | GGATG | 7 cut(s) | 52, 180, 348, 580, 643, 1332, 1392 |
| BstFNI | CGCG | 1 cut(s) | 500 |
| BstKTI | GATC | 5 cut(s) | 240, 441, 940, 981, 1429 |
| BstMAI | GTCTC | 1 cut(s) | 207 |
| BstMBI | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 98, 171, 317, 323, 497, 529, 1226 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstNSI | RCATGY | 2 cut(s) | 848, 1240 |
| BstPI | GGTNACC | 1 cut(s) | 1150 |
| BstSCI | CCNGG | 2 cut(s) | 327, 336 |
| BstSLI | GKGCMC | 1 cut(s) | 230 |
| BstUI | CGCG | 1 cut(s) | 500 |
| BstV1I | GCAGC | 2 cut(s) | 1316, 1352 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 328, 547 |
| BtgI | CCRYGG | 2 cut(s) | 498, 546 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtsCI | GGATG | 7 cut(s) | 52, 180, 348, 580, 643, 1332, 1392 |
| BtsI | GCAGTG | 1 cut(s) | 1275 |
| BtsIMutI | CAGTG | 4 cut(s) | 559, 654, 915, 1275 |
| BveI | ACCTGC | 1 cut(s) | 620 |
| Cac8I | GCNNGC | 3 cut(s) | 846, 1045, 1057 |
| Cfr10I | RCCGGY | 5 cut(s) | 292, 380, 410, 1043, 1055 |
| Cfr13I | GGNCC | 5 cut(s) | 132, 141, 295, 809, 1041 |
| Cfr42I | CCGCGG | 1 cut(s) | 501 |
| Csp6I | GTAC | 2 cut(s) | 508, 1063 |
| CspAI | ACCGGT | 2 cut(s) | 380, 410 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 174, 209 |
| CviQI | GTAC | 2 cut(s) | 508, 1063 |
| DdeI | CTNAG | 3 cut(s) | 169, 907, 1352 |
| DpnI | GATC | 5 cut(s) | 239, 440, 939, 980, 1428 |
| DpnII | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| DriI | GACNNNNNGTC | 1 cut(s) | 10 |
| EaeI | YGGCCR | 5 cut(s) | 90, 330, 363, 1053, 1057 |
| Eam1104I | CTCTTC | 1 cut(s) | 1245 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 10 |
| EarI | CTCTTC | 1 cut(s) | 1245 |
| Eco130I | CCWWGG | 1 cut(s) | 546 |
| Eco47I | GGWCC | 2 cut(s) | 132, 295 |
| Eco88I | CYCGRG | 1 cut(s) | 62 |
| Eco91I | GGTNACC | 1 cut(s) | 1150 |
| EcoO65I | GGTNACC | 1 cut(s) | 1150 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| EcoT14I | CCWWGG | 1 cut(s) | 546 |
| EcoT22I | ATGCAT | 2 cut(s) | 850, 1242 |
| ErhI | CCWWGG | 1 cut(s) | 546 |
| FaqI | GGGAC | 3 cut(s) | 886, 1153, 1247 |
| FauI | CCCGC | 1 cut(s) | 1040 |
| FbaI | TGATCA | 1 cut(s) | 1426 |
| Fnu4HI | GCNGC | 4 cut(s) | 318, 366, 1305, 1366 |
| FokI | GGATG | 7 cut(s) | 39, 167, 335, 587, 630, 1339, 1399 |
| FseI | GGCCGGCC | 1 cut(s) | 1059 |
| Fsp4HI | GCNGC | 4 cut(s) | 318, 366, 1305, 1366 |
| FspBI | CTAG | 6 cut(s) | 206, 687, 1103, 1230, 1289, 1310 |
| GluI | GCNGC | 4 cut(s) | 318, 366, 1305, 1366 |
| GsaI | CCCAGC | 1 cut(s) | 1209 |
| HincII | GTYRAC | 1 cut(s) | 495 |
| HindII | GTYRAC | 1 cut(s) | 495 |
| HinfI | GANTC | 6 cut(s) | 11, 65, 249, 372, 760, 1253 |
| HpaI | GTTAAC | 1 cut(s) | 495 |
| HphI | GGTGA | 5 cut(s) | 235, 256, 644, 671, 1162 |
| Hpy166II | GTNNAC | 1 cut(s) | 495 |
| Hpy188I | TCNGA | 2 cut(s) | 937, 1019 |
| Hpy188III | TCNNGA | 1 cut(s) | 62 |
| Hpy8I | GTNNAC | 1 cut(s) | 495 |
| HpyAV | CCTTC | 4 cut(s) | 301, 511, 650, 738 |
| HpyCH4III | ACNGT | 2 cut(s) | 155, 985 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 98, 171, 317, 323, 497, 529, 1226 |
| HpyF3I | CTNAG | 3 cut(s) | 169, 907, 1352 |
| KroI | GCCGGC | 2 cut(s) | 1043, 1055 |
| KroNI | GCCGGC | 2 cut(s) | 1045, 1057 |
| Ksp22I | TGATCA | 1 cut(s) | 1426 |
| KspAI | GTTAAC | 1 cut(s) | 495 |
| KspI | CCGCGG | 1 cut(s) | 501 |
| Kzo9I | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| LmnI | GCTCC | 2 cut(s) | 269, 1019 |
| Lsp1109I | GCAGC | 2 cut(s) | 1316, 1352 |
| LweI | GCATC | 3 cut(s) | 357, 408, 1254 |
| MaeI | CTAG | 6 cut(s) | 206, 687, 1103, 1230, 1289, 1310 |
| MaeIII | GTNAC | 2 cut(s) | 1034, 1150 |
| MalI | GATC | 5 cut(s) | 239, 440, 939, 980, 1428 |
| MboI | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| MboII | GAAGA | 5 cut(s) | 232, 686, 689, 844, 1262 |
| MhlI | GDGCHC | 1 cut(s) | 230 |
| MlsI | TGGCCA | 1 cut(s) | 332 |
| MluNI | TGGCCA | 1 cut(s) | 332 |
| MlyI | GAGTC | 3 cut(s) | 20, 74, 1262 |
| MmeI | TCCRAC | 3 cut(s) | 59, 322, 552 |
| Mox20I | TGGCCA | 1 cut(s) | 332 |
| Mph1103I | ATGCAT | 2 cut(s) | 850, 1242 |
| MroNI | GCCGGC | 2 cut(s) | 1043, 1055 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1166 |
| MscI | TGGCCA | 1 cut(s) | 332 |
| MseI | TTAA | 6 cut(s) | 200, 494, 513, 621, 740, 801 |
| Msp20I | TGGCCA | 1 cut(s) | 332 |
| MspA1I | CMGCKG | 2 cut(s) | 109, 500 |
| MspR9I | CCNGG | 2 cut(s) | 329, 338 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| MvnI | CGCG | 1 cut(s) | 500 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 98, 171, 317, 323, 497, 529, 1226 |
| NaeI | GCCGGC | 2 cut(s) | 1045, 1057 |
| NciI | CCSGG | 1 cut(s) | 338 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NdeII | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| NgoMIV | GCCGGC | 2 cut(s) | 1043, 1055 |
| NlaIV | GGNNCC | 6 cut(s) | 175, 229, 271, 406, 1021, 1042 |
| NmeAIII | GCCGAG | 1 cut(s) | 169 |
| NmuCI | GTSAC | 2 cut(s) | 1034, 1150 |
| NsiI | ATGCAT | 2 cut(s) | 850, 1242 |
| NspI | RCATGY | 2 cut(s) | 848, 1240 |
| PaeI | GCATGC | 1 cut(s) | 848 |
| PaqCI | CACCTGC | 1 cut(s) | 620 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 351 |
| PdiI | GCCGGC | 2 cut(s) | 1045, 1057 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1166 |
| PfeI | GAWTC | 3 cut(s) | 249, 372, 760 |
| PinAI | ACCGGT | 2 cut(s) | 380, 410 |
| PkrI | GCNGC | 4 cut(s) | 319, 367, 1306, 1367 |
| PleI | GAGTC | 3 cut(s) | 19, 73, 1261 |
| PpsI | GAGTC | 3 cut(s) | 19, 73, 1261 |
| PsiI | TTATAA | 1 cut(s) | 773 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspEI | GGTNACC | 1 cut(s) | 1150 |
| PspFI | CCCAGC | 1 cut(s) | 1205 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 6 cut(s) | 175, 229, 271, 406, 1021, 1042 |
| PspPI | GGNCC | 5 cut(s) | 132, 141, 295, 809, 1041 |
| PvuII | CAGCTG | 1 cut(s) | 109 |
| RigI | GGCCGGCC | 1 cut(s) | 1059 |
| RsaI | GTAC | 2 cut(s) | 509, 1064 |
| RsaNI | GTAC | 2 cut(s) | 508, 1063 |
| SacII | CCGCGG | 1 cut(s) | 501 |
| SaqAI | TTAA | 6 cut(s) | 200, 494, 513, 621, 740, 801 |
| SatI | GCNGC | 4 cut(s) | 318, 366, 1305, 1366 |
| Sau3AI | GATC | 5 cut(s) | 237, 438, 937, 978, 1426 |
| Sau96I | GGNCC | 5 cut(s) | 132, 141, 295, 809, 1041 |
| SchI | GAGTC | 3 cut(s) | 20, 74, 1262 |
| ScrFI | CCNGG | 2 cut(s) | 329, 338 |
| SduI | GDGCHC | 1 cut(s) | 230 |
| SfaNI | GCATC | 3 cut(s) | 357, 408, 1254 |
| Sfr303I | CCGCGG | 1 cut(s) | 501 |
| SgrBI | CCGCGG | 1 cut(s) | 501 |
| SinI | GGWCC | 2 cut(s) | 132, 295 |
| SpeI | ACTAGT | 1 cut(s) | 1288 |
| SphI | GCATGC | 1 cut(s) | 848 |
| SsiI | CCGC | 5 cut(s) | 318, 366, 498, 500, 1047 |
| SspI | AATATT | 1 cut(s) | 900 |
| SspMI | CTAG | 6 cut(s) | 206, 687, 1103, 1230, 1289, 1310 |
| StyD4I | CCNGG | 2 cut(s) | 327, 336 |
| StyI | CCWWGG | 1 cut(s) | 546 |
| TaaI | ACNGT | 2 cut(s) | 155, 985 |
| TaqI | TCGA | 3 cut(s) | 977, 1298, 1405 |
| TatI | WGTACW | 2 cut(s) | 507, 1062 |
| TauI | GCSGC | 2 cut(s) | 320, 368 |
| TfiI | GAWTC | 3 cut(s) | 249, 372, 760 |
| Tru1I | TTAA | 6 cut(s) | 200, 494, 513, 621, 740, 801 |
| Tru9I | TTAA | 6 cut(s) | 200, 494, 513, 621, 740, 801 |
| TscAI | CASTG | 4 cut(s) | 566, 654, 915, 1282 |
| TseFI | GTSAC | 2 cut(s) | 1034, 1150 |
| TseI | GCWGC | 2 cut(s) | 1304, 1365 |
| Tsp45I | GTSAC | 2 cut(s) | 1034, 1150 |
| TspDTI | ATGAA | 5 cut(s) | 320, 598, 810, 853, 1010 |
| TspRI | CASTG | 4 cut(s) | 566, 654, 915, 1282 |
| VpaK11BI | GGWCC | 2 cut(s) | 132, 295 |
| XapI | RAATTY | 3 cut(s) | 113, 803, 926 |
| XceI | RCATGY | 2 cut(s) | 848, 1240 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1067, 1120, 1172 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1166 |
| XspI | CTAG | 6 cut(s) | 206, 687, 1103, 1230, 1289, 1310 |
| Zsp2I | ATGCAT | 2 cut(s) | 850, 1242 |