Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Forward (+)

15238111 .. 15239434

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGAAGAACAACGCGTCACTCCTAGCTCTAAAATGTGTTCGTCCTCGACGCCTCGTCACTCCTTGTTCAGCGCGGCGGCGGCCGAGTAGGAGGAGAAAGGGGGAGGCTAGGTTAGGATTTGAGTTTGGGGAGTTATCTGCTCCAAATCGAAAAGTGAACAGTAAAGCTCAATTGAGTTTCTGGCTGAGCAGATTCTTAATGAGGTATGATGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCTGATCATGTGATGTGTTCGATAATGATTACTATCATGAGGAAATTTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATAAACAGGAAAGGTGTCAAATGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCATTTTGTGATGAGGAGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

159

Amino Acids

18.46

Weight (kDa)

10.06

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccII	CGCG	2 cut(s)	17, 76
AciI	CCGC	3 cut(s)	76, 79, 82
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	341, 443, 449
AhdI	GACNNNNNGTC	1 cut(s)	56
AluBI	AGCT	3 cut(s)	29, 170, 418
AluI	AGCT	3 cut(s)	29, 170, 418
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	391
BccI	CCATC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	26, 111
BisI	GCNGC	3 cut(s)	77, 80, 83
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	3 cut(s)	78, 81, 84
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmsI	GCATC	2 cut(s)	205, 313
Bpu1102I	GCTNAGC	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse8I	GATNNNNATC	1 cut(s)	290
BseJI	GATNNNNATC	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	109, 428
BseX3I	CGGCCG	1 cut(s)	83
Bsh1236I	CGCG	2 cut(s)	17, 76
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	262, 465
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	3 cut(s)	76, 79, 82
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	17, 76
BspHI	TCATGA	1 cut(s)	294
BspPI	GGATC	1 cut(s)	473
BssMI	GATC	2 cut(s)	262, 465
BssNI	GRCGYC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	17, 76
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	265, 468
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	262, 465
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 323
BstUI	CGCG	2 cut(s)	17, 76
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	76
CseI	GACGC	2 cut(s)	6, 60
CviAII	CATG	3 cut(s)	266, 295, 327
CviJI	RGCY	7 cut(s)	29, 85, 110, 170, 187, 418, 431
CviKI_1	RGCY	7 cut(s)	29, 85, 110, 170, 187, 418, 431
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	264, 467
DpnII	GATC	2 cut(s)	262, 465
DriI	GACNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	83
EagI	CGGCCG	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	416
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	416
EclXI	CGGCCG	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	269, 298, 330
FaiI	YATR	7 cut(s)	210, 229, 231, 267, 296, 328, 395
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	3 cut(s)	265, 294, 326
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	77, 80, 83
Fsp4HI	GCNGC	3 cut(s)	77, 80, 83
FspBI	CTAG	2 cut(s)	26, 111
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	77, 80, 83
HaeIII	GGCC	1 cut(s)	85
HgaI	GACGC	2 cut(s)	6, 60
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	269, 298, 330
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	195, 370
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	260, 295, 374, 474
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	217, 266
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	317, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 323
HpyF3I	CTNAG	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	269, 298, 330
HspAI	GCGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 465
LmnI	GCTCC	2 cut(s)	148, 415
LpnPI	CCDG	4 cut(s)	169, 273, 337, 359
LweI	GCATC	2 cut(s)	205, 313
MaeI	CTAG	2 cut(s)	26, 111
MaeIII	GTNAC	2 cut(s)	18, 58
MalI	GATC	2 cut(s)	264, 467
MboI	GATC	2 cut(s)	262, 465
MboII	GAAGA	3 cut(s)	19, 433, 469
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	3 cut(s)	173, 302, 444
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	7 cut(s)	57, 65, 87, 100, 198, 291, 406
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	1 cut(s)	200
MunI	CAATTG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	17, 76
MwoI	GCNNNNNNNGC	2 cut(s)	82, 323
NdeII	GATC	2 cut(s)	262, 465
NlaIII	CATG	3 cut(s)	269, 298, 330
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	18, 58
NsiI	ATGCAT	1 cut(s)	328
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	78, 81, 84
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	77, 80, 83
Sau3AI	GATC	2 cut(s)	262, 465
SchI	GAGTC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	7 cut(s)	31, 116, 172, 209, 228, 361, 420
SfaNI	GCATC	2 cut(s)	205, 313
Sse9I	AATT	3 cut(s)	173, 302, 444
SsiI	CCGC	3 cut(s)	76, 79, 82
SspMI	CTAG	2 cut(s)	26, 111
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	4 cut(s)	49, 151, 278, 473
TasI	AATT	3 cut(s)	173, 302, 444
TauI	GCSGC	3 cut(s)	79, 82, 85
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	18, 58
Tsp45I	GTSAC	2 cut(s)	18, 58
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	2 cut(s)	26, 111
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.