Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001852.1

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Forward (+)

59471 .. 64000

Gene Structure 4530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001852.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgccgtcgtcgcttcttcgaggccgtcgtctcggaacccacgccggcgtcgtcaagggtgaagtctctgtattgaatgtggcgttgctattggtttcgaagccaagttaccttaagtttgtttccaacgccactgacttcccatcgggggagtactataaggactgcattatcagcggaggtggcactgctgggtgccctttggctgcgacactatcatccaggtttcgggtcctcctgctcaaaagtggtggtgttgcttatggcaatcaaaacttgatgtcccaggatggtttctgtcagcactcatggataaaagtgaacagtaaagctcaattgagtttctggctgagcagattcttaatgaggtatgatgatgcttggaaggtatatgagacgatggaagcaaataatacccttcctgatcatgtgatgtgttcgataatgattactatcatgaggaaatttggtcgcagtgcaaaagatgcatgggacttctttgaaaaaataaacaggaaaggtgtcaaatggagtcaggaagttttgggtgctcttataaaatcattttgtgatgaggagctgaagagtgaagcccttatcattcaaattgaaatggagaagaaagggatctcatcgagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

213

Amino Acids

23.81

Weight (kDa)

9.28

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	195
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	148, 228
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	76, 503, 605, 611
AjnI	CCWGG	2 cut(s)	221, 285
AluBI	AGCT	2 cut(s)	332, 580
AluI	AGCT	2 cut(s)	332, 580
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	3 cut(s)	35, 70, 389
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	3 cut(s)	151, 284, 394
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	223, 287
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	35, 70, 389
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	207
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	223, 287
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	37, 197, 233
BmrFI	CCNGG	2 cut(s)	223, 287
BmsI	GCATC	2 cut(s)	367, 475
Bpu1102I	GCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 228
Bse118I	RCCGGY	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	223, 287
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	218, 295
BseJI	GATNNNNATC	1 cut(s)	452
BseLI	CCNNNNNNNGG	2 cut(s)	148, 228
BseMII	CTCAG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	268, 506
BslI	CCNNNNNNNGG	2 cut(s)	148, 228
BsmAI	GTCTC	3 cut(s)	35, 70, 389
BsmBI	CGTCTC	2 cut(s)	35, 389
BsmFI	GGGAC	2 cut(s)	268, 506
BsnI	GGCC	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	200, 553
Bsp143I	GATC	2 cut(s)	424, 627
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	3 cut(s)	37, 197, 233
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	424, 627
BssNI	GRCGYC	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	223, 287
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	578
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	218, 295
BstKTI	GATC	2 cut(s)	427, 630
BstMAI	GTCTC	3 cut(s)	35, 70, 389
BstMBI	GATC	2 cut(s)	424, 627
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 174, 183, 485
BstNI	CCWGG	2 cut(s)	223, 287
BstSCI	CCNGG	2 cut(s)	221, 285
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	218, 295
BtsI	GCAGTG	2 cut(s)	186, 481
BtsIMutI	CAGTG	3 cut(s)	132, 186, 481
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	4 cut(s)	309, 428, 457, 489
CviJI	RGCY	7 cut(s)	24, 103, 206, 332, 349, 580, 593
CviKI_1	RGCY	7 cut(s)	24, 103, 206, 332, 349, 580, 593
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	2 cut(s)	426, 629
DpnII	GATC	2 cut(s)	424, 627
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	221, 285
EcoT22I	ATGCAT	1 cut(s)	490
Esp3I	CGTCTC	2 cut(s)	35, 389
FaeI	CATG	4 cut(s)	312, 431, 460, 492
FaqI	GGGAC	2 cut(s)	268, 506
FatI	CATG	4 cut(s)	308, 427, 456, 488
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	205, 302
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	312, 431, 460, 492
HinfI	GANTC	2 cut(s)	357, 532
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	4 cut(s)	422, 457, 536, 636
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	4 cut(s)	10, 13, 30, 53
HpyAV	CCTTC	2 cut(s)	379, 428
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	168, 479, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 174, 183, 485
HpyF3I	CTNAG	1 cut(s)	350
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	312, 431, 460, 492
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	424, 627
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	367, 475
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	426, 629
MboI	GATC	2 cut(s)	424, 627
MboII	GAAGA	3 cut(s)	8, 595, 631
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	200, 553
MluCI	AATT	3 cut(s)	335, 464, 606
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	14, 173, 245, 360, 453, 568
Mph1103I	ATGCAT	1 cut(s)	490
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	2 cut(s)	114, 362
MspA1I	CMGCKG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	223, 287
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	223, 287
MwoI	GCNNNNNNNGC	4 cut(s)	10, 174, 183, 485
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	424, 627
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	4 cut(s)	312, 431, 460, 492
NlaIV	GGNNCC	3 cut(s)	37, 197, 233
NsiI	ATGCAT	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	98
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	2 cut(s)	25, 48
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	221, 285
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	221, 285
PspN4I	GGNNCC	3 cut(s)	37, 197, 233
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	114, 362
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	424, 627
Sau96I	GGNCC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	223, 287
SduI	GDGCHC	2 cut(s)	200, 553
SetI	ASST	8 cut(s)	114, 184, 227, 334, 371, 390, 523, 582
SfaNI	GCATC	2 cut(s)	367, 475
SfuI	TTCGAA	1 cut(s)	98
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	335, 464, 606
SsiI	CCGC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	221, 285
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	4 cut(s)	19, 98, 440, 635
TasI	AATT	3 cut(s)	335, 464, 606
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	2 cut(s)	114, 362
Tru9I	TTAA	2 cut(s)	114, 362
TscAI	CASTG	3 cut(s)	139, 193, 481
TseI	GCWGC	1 cut(s)	206
TspRI	CASTG	3 cut(s)	139, 193, 481
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.