Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

9389246 .. 9392336

Gene Structure 3091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGTACTCGAAAGCGGGGTTTCTTCTTGATGCAAAGCGGGTTTTTGAGTTGATGCCGGAGAGGAATGTGGTTATGTATAATACACTTATTACTGGGCTTCTGAGGTGTGGATTGATCGGAGATGCTGAGTGTTTGTTTGGTCACATGCCTGAAAAAGACTCCATTTCGTGGACCACCATGATTACCAGACTCACGAGAAACGGTGCAGGCGGAAAAGCACTTGATAAGTTTAGAGAAATGAGGTCGGAAGCTCCTCCTACTCCCACTTCCAGCTCCTCAGCCTCCATTTTCCTTCCATTTCTCCAAGACGAAGAAGAAGCAGAAGAAGAAGAGGACCATGAAGTTGAAGATGAAGCTGAAGAAGAAGAAGAGGACCCAGATGACCCAATTGTCATATTCTTCAAGTCTCGGACTTCGACCCAAGACCCACAACGAGAAGGCAAGCTCTCTCTGCAGAAGAACCGCCGCTCTTCTTGGCACTTGGCTGACGATTTAGACGATTCCGAAACCGATTCCGGCGTCGACCCAGTGCTGGAAGCACAAAAACAACAACTGGGTTCGGTGGATTCCGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCGGCAGAATATGACACTGGGAGAGGAATTGGGAGGTTTTGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAAGGATTGCTTTTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCGGCCAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCCTTATGTGCTCTAAAAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGCAGAAGAAAGGGATCCCATCAAATGCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATATGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGAAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCGGTGGCTGGAATGAGAAAGCTTACATCGCATTTGAGAACATGCAAAGGGAAGGATTAAAGCCCTCCATAGAAACATATACTGCTTTACTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATCAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTTTTCTTGATGGATTTGCTAAGCAAGGTCACTATCTTGAAGCAAGAGATGTTGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTAAAACCTGACTCTGTAACTTGCTCAACTATGATCTATTCCTCCATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTGAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATATTGGATGTAAAACTTGCGAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

754

Amino Acids

85.21

Weight (kDa)

6.2

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	298 - 343	1.7e-10	PPR repeat family
PPR_long	PF17177	312 - 449	7.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	396 - 452	2.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	400 - 433	2.5e-08	PPR repeat
PPR_2	PF13041	405 - 452	1.1e-16	PPR repeat family
PPR	PF01535	408 - 437	9.5e-09	PPR repeat
PPR_long	PF17177	428 - 533	6.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	439 - 486	1.5e-09	PPR repeat family
PPR_3	PF13812	462 - 522	4e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	463 - 581	2.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	474 - 522	3.1e-09	PPR repeat family
PPR_2	PF13041	514 - 557	1.1e-07	PPR repeat family
PPR_3	PF13812	535 - 589	1.9e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	549 - 594	8.6e-07	PPR repeat family
PPR_2	PF13041	583 - 629	2.1e-08	PPR repeat family
PPR_2	PF13041	615 - 659	8e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	909, 1133
AasI	GACNNNNNNGTC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	468
AccI	GTMKAC	2 cut(s)	522, 1544
AccII	CGCG	2 cut(s)	1244, 1992
AccIII	TCCGGA	1 cut(s)	997
AciI	CCGC	7 cut(s)	14, 37, 210, 463, 466, 631, 1990
AclWI	GGATC	3 cut(s)	1008, 1198, 1211
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	2 cut(s)	1704, 1820
AcuI	CTGAAG	3 cut(s)	378, 1178, 1296
AcvI	CACGTG	1 cut(s)	1886
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	168, 532, 824
AflIII	ACRYGT	3 cut(s)	1010, 1242, 1439
AjiI	CACGTC	1 cut(s)	1011
AjnI	CCWGG	1 cut(s)	2060
AjuI	GAANNNNNNNTTGG	4 cut(s)	663, 695, 872, 904
Alw21I	GWGCWC	2 cut(s)	938, 1129
Alw26I	GTCTC	2 cut(s)	411, 965
AlwI	GGATC	3 cut(s)	1008, 1198, 1211
Aor13HI	TCCGGA	1 cut(s)	997
AoxI	GGCC	2 cut(s)	876, 925
ApeKI	GCWGC	4 cut(s)	914, 1366, 1487, 1840
ApoI	RAATTY	2 cut(s)	1704, 1820
AseI	ATTAAT	1 cut(s)	2148
Asp700I	GAANNNNTTC	1 cut(s)	887
AspA2I	CCTAGG	1 cut(s)	794
AspS9I	GGNCC	3 cut(s)	171, 334, 373
AsuHPI	GGTGA	3 cut(s)	731, 1759, 2047
AvaII	GGWCC	3 cut(s)	171, 334, 373
AvrII	CCTAGG	1 cut(s)	794
BamHI	GGATCC	1 cut(s)	1203
BauI	CACGAG	1 cut(s)	193
BbrPI	CACGTG	1 cut(s)	1886
Bbv12I	GWGCWC	2 cut(s)	938, 1129
BbvCI	CCTCAGC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	901, 1378, 1474, 1852
BciT130I	CCWGG	1 cut(s)	2062
BclI	TGATCA	1 cut(s)	1719
BcoDI	GTCTC	2 cut(s)	411, 965
BfaI	CTAG	2 cut(s)	621, 795
BfmI	CTRYAG	2 cut(s)	452, 1488
BisI	GCNGC	6 cut(s)	466, 632, 915, 1367, 1488, 1841
BlnI	CCTAGG	1 cut(s)	794
BlpI	GCTNAGC	1 cut(s)	1779
BlsI	GCNGC	6 cut(s)	467, 633, 916, 1368, 1489, 1842
Bme1390I	CCNGG	1 cut(s)	2062
Bme18I	GGWCC	3 cut(s)	171, 334, 373
BmgBI	CACGTC	1 cut(s)	1011
BmgT120I	GGNCC	3 cut(s)	171, 334, 373
BmiI	GGNNCC	4 cut(s)	375, 777, 1205, 1419
BmrFI	CCNGG	1 cut(s)	2062
BmrI	ACTGGG	4 cut(s)	102, 521, 563, 656
BmsI	GCATC	9 cut(s)	19, 42, 112, 943, 1051, 1336, 1483, 1654, 2047
BmuI	ACTGGG	4 cut(s)	102, 521, 563, 656
Bpu10I	CCTNAGC	2 cut(s)	277, 2078
Bpu1102I	GCTNAGC	1 cut(s)	1779
BpuEI	CTTGAG	1 cut(s)	1990
BsaAI	YACGTR	1 cut(s)	1886
BsaBI	GATNNNNATC	2 cut(s)	576, 1028
BsaHI	GRCGYC	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	794
BsaWI	WCCGGW	1 cut(s)	997
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 532, 824
Bse118I	RCCGGY	1 cut(s)	874
Bse1I	ACTGG	5 cut(s)	97, 527, 558, 651, 1665
Bse8I	GATNNNNATC	2 cut(s)	576, 1028
BseAI	TCCGGA	1 cut(s)	997
BseBI	CCWGG	1 cut(s)	2062
BseDI	CCNNGG	1 cut(s)	794
BseGI	GGATG	7 cut(s)	768, 901, 1351, 1512, 1669, 1986, 2098
BseJI	GATNNNNATC	2 cut(s)	576, 1028
BseLI	CCNNNNNNNGG	3 cut(s)	168, 532, 824
BseMII	CTCAG	7 cut(s)	92, 117, 291, 1281, 1362, 1493, 1680
BseNI	ACTGG	5 cut(s)	97, 527, 558, 651, 1665
BseRI	GAGGAG	2 cut(s)	243, 265
BseXI	GCAGC	4 cut(s)	901, 1378, 1474, 1852
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	1244, 1992
BshFI	GGCC	2 cut(s)	878, 927
BsiHKAI	GWGCWC	2 cut(s)	938, 1129
BsiSI	CCGG	4 cut(s)	56, 516, 875, 998
BslFI	GGGAC	3 cut(s)	1082, 1512, 1753
BslI	CCNNNNNNNGG	3 cut(s)	168, 532, 824
BsmAI	GTCTC	2 cut(s)	411, 965
BsmBI	CGTCTC	1 cut(s)	965
BsmFI	GGGAC	3 cut(s)	1082, 1512, 1753
BsmI	GAATGC	2 cut(s)	1368, 1879
BsnI	GGCC	2 cut(s)	878, 927
Bsp1286I	GDGCHC	2 cut(s)	938, 1129
Bsp13I	TCCGGA	1 cut(s)	997
Bsp143I	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
Bsp1720I	GCTNAGC	1 cut(s)	1779
BspACI	CCGC	7 cut(s)	14, 37, 210, 463, 466, 631, 1990
BspANI	GGCC	2 cut(s)	878, 927
BspCNI	CTCAG	7 cut(s)	93, 118, 290, 1282, 1363, 1494, 1681
BspEI	TCCGGA	1 cut(s)	997
BspFNI	CGCG	2 cut(s)	1244, 1992
BspHI	TCATGA	1 cut(s)	1032
BspLI	GGNNCC	4 cut(s)	375, 777, 1205, 1419
BspMAI	CTGCAG	2 cut(s)	456, 1492
BspPI	GGATC	3 cut(s)	1008, 1198, 1211
BspQI	GCTCTTC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	874
BsrI	ACTGG	5 cut(s)	97, 527, 558, 651, 1665
BssAI	RCCGGY	1 cut(s)	874
BssECI	CCNNGG	1 cut(s)	794
BssMI	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
BssNAI	GTATAC	1 cut(s)	1545
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	794
Bst1107I	GTATAC	1 cut(s)	1545
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	2062
Bst4CI	ACNGT	3 cut(s)	203, 1355, 1849
Bst6I	CTCTTC	4 cut(s)	324, 363, 475, 1154
BstACI	GRCGYC	1 cut(s)	519
BstAPI	GCANNNNNTGC	2 cut(s)	1061, 2240
BstBAI	YACGTR	1 cut(s)	1886
BstC8I	GCNNGC	5 cut(s)	208, 443, 1677, 1681, 1994
BstF5I	GGATG	7 cut(s)	768, 901, 1351, 1512, 1669, 1986, 2098
BstFNI	CGCG	2 cut(s)	1244, 1992
BstKTI	GATC	5 cut(s)	117, 1003, 1206, 1722, 1977
BstMAI	GTCTC	2 cut(s)	411, 965
BstMBI	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
BstMWI	GCNNNNNNNGC	6 cut(s)	451, 933, 1061, 1493, 1598, 2240
BstNI	CCWGG	1 cut(s)	2062
BstNSI	RCATGY	3 cut(s)	148, 1443, 1615
BstSCI	CCNGG	1 cut(s)	2060
BstSFI	CTRYAG	2 cut(s)	452, 1488
BstUI	CGCG	2 cut(s)	1244, 1992
BstV1I	GCAGC	4 cut(s)	901, 1378, 1474, 1852
BstX2I	RGATCY	1 cut(s)	1203
BstYI	RGATCY	1 cut(s)	1203
BstZ17I	GTATAC	1 cut(s)	1545
BsuRI	GGCC	2 cut(s)	878, 927
BtgZI	GCGATG	1 cut(s)	1582
BtrI	CACGTC	1 cut(s)	1011
BtsCI	GGATG	7 cut(s)	768, 901, 1351, 1512, 1669, 1986, 2098
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	5 cut(s)	534, 644, 1057, 1686, 1854
Cac8I	GCNNGC	5 cut(s)	208, 443, 1677, 1681, 1994
CciI	TCATGA	1 cut(s)	1032
Cfr10I	RCCGGY	1 cut(s)	874
Cfr13I	GGNCC	3 cut(s)	171, 334, 373
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	1899, 1934
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	5 cut(s)	116, 1002, 1205, 1721, 1976
DpnII	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
DraI	TTTAAA	1 cut(s)	1944
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	876
Eam1104I	CTCTTC	4 cut(s)	324, 363, 475, 1154
EarI	CTCTTC	4 cut(s)	324, 363, 475, 1154
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	794
Eco47I	GGWCC	3 cut(s)	171, 334, 373
Eco57I	CTGAAG	3 cut(s)	378, 1178, 1296
Eco72I	CACGTG	1 cut(s)	1886
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	2060
EcoT14I	CCWWGG	1 cut(s)	794
EcoT22I	ATGCAT	6 cut(s)	1066, 1351, 1498, 1564, 1669, 1879
ErhI	CCWWGG	1 cut(s)	794
Esp3I	CGTCTC	1 cut(s)	965
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	3 cut(s)	1082, 1512, 1753
FauI	CCCGC	2 cut(s)	7, 30
FauNDI	CATATG	1 cut(s)	1879
FbaI	TGATCA	1 cut(s)	1719
FblI	GTMKAC	2 cut(s)	522, 1544
Fnu4HI	GCNGC	6 cut(s)	466, 632, 915, 1367, 1488, 1841
FokI	GGATG	7 cut(s)	775, 908, 1358, 1519, 1676, 1973, 2105
Fsp4HI	GCNGC	6 cut(s)	466, 632, 915, 1367, 1488, 1841
FspBI	CTAG	2 cut(s)	621, 795
GluI	GCNGC	6 cut(s)	466, 632, 915, 1367, 1488, 1841
HaeIII	GGCC	2 cut(s)	878, 927
HapII	CCGG	4 cut(s)	56, 516, 875, 998
HgaI	GACGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	519
HincII	GTYRAC	2 cut(s)	523, 2248
HindII	GTYRAC	2 cut(s)	523, 2248
HindIII	AAGCTT	3 cut(s)	1385, 1590, 2075
HinfI	GANTC	8 cut(s)	158, 189, 500, 512, 566, 572, 1108, 1952
HpaI	GTTAAC	1 cut(s)	2248
HpaII	CCGG	4 cut(s)	56, 516, 875, 998
HphI	GGTGA	3 cut(s)	731, 1759, 2047
Hpy166II	GTNNAC	4 cut(s)	171, 523, 1545, 2248
Hpy188III	TCNNGA	9 cut(s)	26, 193, 998, 1033, 1112, 1766, 1796, 2007, 2203
Hpy8I	GTNNAC	4 cut(s)	171, 523, 1545, 2248
Hpy99I	CGWCG	1 cut(s)	524
HpyCH4III	ACNGT	3 cut(s)	203, 1355, 1849
HpyCH4IV	ACGT	2 cut(s)	1010, 1885
HpyF10VI	GCNNNNNNNGC	6 cut(s)	451, 933, 1061, 1493, 1598, 2240
HpySE526I	ACGT	2 cut(s)	1010, 1885
Hsp92I	GRCGYC	1 cut(s)	519
Kpn2I	TCCGGA	1 cut(s)	997
Ksp22I	TGATCA	1 cut(s)	1719
KspAI	GTTAAC	1 cut(s)	2248
Kzo9I	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	4 cut(s)	256, 278, 775, 1417
Lsp1109I	GCAGC	4 cut(s)	901, 1378, 1474, 1852
LweI	GCATC	9 cut(s)	19, 42, 112, 943, 1051, 1336, 1483, 1654, 2047
MaeI	CTAG	2 cut(s)	621, 795
MaeII	ACGT	2 cut(s)	1010, 1885
MaeIII	GTNAC	7 cut(s)	140, 787, 1006, 1478, 1747, 1787, 1957
MalI	GATC	5 cut(s)	116, 1002, 1205, 1721, 1976
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
MfeI	CAATTG	2 cut(s)	387, 1102
MflI	RGATCY	1 cut(s)	1203
MhlI	GDGCHC	2 cut(s)	938, 1129
MluI	ACGCGT	1 cut(s)	1242
MlyI	GAGTC	4 cut(s)	152, 183, 1117, 1946
MmeI	TCCRAC	2 cut(s)	225, 580
Mph1103I	ATGCAT	6 cut(s)	1066, 1351, 1498, 1564, 1669, 1879
MroI	TCCGGA	1 cut(s)	997
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	9 cut(s)	864, 1235, 1311, 1332, 1628, 1943, 2148, 2175, 2247
MslI	CAYNNNNRTG	2 cut(s)	1691, 1991
MspA1I	CMGCKG	1 cut(s)	1915
MspI	CCGG	4 cut(s)	56, 516, 875, 998
MspR9I	CCNGG	1 cut(s)	2062
MunI	CAATTG	2 cut(s)	387, 1102
Mva1269I	GAATGC	2 cut(s)	1368, 1879
MvaI	CCWGG	1 cut(s)	2062
MvnI	CGCG	2 cut(s)	1244, 1992
MwoI	GCNNNNNNNGC	6 cut(s)	451, 933, 1061, 1493, 1598, 2240
NdeI	CATATG	1 cut(s)	1879
NdeII	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
NlaIV	GGNNCC	4 cut(s)	375, 777, 1205, 1419
NmuCI	GTSAC	5 cut(s)	140, 1006, 1478, 1747, 1787
NsiI	ATGCAT	6 cut(s)	1066, 1351, 1498, 1564, 1669, 1879
NspI	RCATGY	3 cut(s)	148, 1443, 1615
PagI	TCATGA	1 cut(s)	1032
PciI	ACATGT	1 cut(s)	1439
PciSI	GCTCTTC	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PctI	GAATGC	2 cut(s)	1368, 1879
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	4 cut(s)	500, 512, 566, 572
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	6 cut(s)	467, 633, 916, 1368, 1489, 1842
PleI	GAGTC	4 cut(s)	152, 183, 1116, 1946
PmaCI	CACGTG	1 cut(s)	1886
PmlI	CACGTG	1 cut(s)	1886
PpsI	GAGTC	4 cut(s)	152, 183, 1116, 1946
Ppu21I	YACGTR	1 cut(s)	1886
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	1439
PshBI	ATTAAT	1 cut(s)	2148
PsiI	TTATAA	2 cut(s)	909, 1133
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	2060
PspCI	CACGTG	1 cut(s)	1886
PspGI	CCWGG	1 cut(s)	2060
PspN4I	GGNNCC	4 cut(s)	375, 777, 1205, 1419
PspPI	GGNCC	3 cut(s)	171, 334, 373
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	2 cut(s)	456, 1492
PsuI	RGATCY	1 cut(s)	1203
PvuII	CAGCTG	1 cut(s)	1915
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	1691, 1991
SalI	GTCGAC	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	9 cut(s)	864, 1235, 1311, 1332, 1628, 1943, 2148, 2175, 2247
SatI	GCNGC	6 cut(s)	466, 632, 915, 1367, 1488, 1841
Sau3AI	GATC	5 cut(s)	114, 1000, 1203, 1719, 1974
Sau96I	GGNCC	3 cut(s)	171, 334, 373
SchI	GAGTC	4 cut(s)	152, 183, 1117, 1946
ScrFI	CCNGG	1 cut(s)	2062
SduI	GDGCHC	2 cut(s)	938, 1129
SfaNI	GCATC	9 cut(s)	19, 42, 112, 943, 1051, 1336, 1483, 1654, 2047
SfcI	CTRYAG	2 cut(s)	452, 1488
SinI	GGWCC	3 cut(s)	171, 334, 373
SmiMI	CAYNNNNRTG	2 cut(s)	1691, 1991
SmlI	CTYRAG	1 cut(s)	2005
SmoI	CTYRAG	1 cut(s)	2005
SsiI	CCGC	7 cut(s)	14, 37, 210, 463, 466, 631, 1990
SspI	AATATT	2 cut(s)	1336, 2088
SspMI	CTAG	2 cut(s)	621, 795
StyD4I	CCNGG	1 cut(s)	2060
StyI	CCWWGG	1 cut(s)	794
TaaI	ACNGT	3 cut(s)	203, 1355, 1849
TaiI	ACGT	2 cut(s)	1013, 1888
TaqI	TCGA	4 cut(s)	8, 416, 522, 1016
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	468, 634
TfiI	GAWTC	4 cut(s)	500, 512, 566, 572
Tru1I	TTAA	9 cut(s)	864, 1235, 1311, 1332, 1628, 1943, 2148, 2175, 2247
Tru9I	TTAA	9 cut(s)	864, 1235, 1311, 1332, 1628, 1943, 2148, 2175, 2247
TscAI	CASTG	5 cut(s)	534, 651, 1057, 1693, 1854
TseFI	GTSAC	5 cut(s)	140, 1006, 1478, 1747, 1787
TseI	GCWGC	4 cut(s)	914, 1366, 1487, 1840
Tsp45I	GTSAC	5 cut(s)	140, 1006, 1478, 1747, 1787
TspDTI	ATGAA	9 cut(s)	354, 366, 890, 963, 1100, 1253, 1310, 1523, 1886
TspRI	CASTG	5 cut(s)	534, 651, 1057, 1693, 1854
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	3 cut(s)	171, 334, 373
VspI	ATTAAT	1 cut(s)	2148
XapI	RAATTY	2 cut(s)	1704, 1820
XceI	RCATGY	3 cut(s)	148, 1443, 1615
XmaJI	CCTAGG	1 cut(s)	794
XmiI	GTMKAC	2 cut(s)	522, 1544
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	2 cut(s)	621, 795
Zsp2I	ATGCAT	6 cut(s)	1066, 1351, 1498, 1564, 1669, 1879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.