Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001530.1

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

57720 .. 58785

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001530.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggggcccaggctcggctctggcgacgtgtccggcttcaaaaaagtgaacagtaaagctcaattgagtttctggctgagcagattcttaatgaggtatgatgatgcttggaaggtatatgagacgatggaagcaaataatacccttcctgatcatgtgatgtgttcgataatgattactatcatgaggaaatttggtcgcagtgcaaaagatgcatgggacttctttgaaaaaataaacaggaaaggtgtcaaatggagtcaggaagttttgggtgctcttataaaatcattttgtgatgaggagctgaagagtgaagcccttatcattcaaattgaaatggagaagaaagggatctcatcgagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

122

Amino Acids

14.08

Weight (kDa)

9.14

Isoelectric Point (pI)

22.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	40, 230, 332, 338
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	2 cut(s)	59, 307
AluI	AGCT	2 cut(s)	59, 307
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	5
ApaI	GGGCCC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	5, 6
BaeGI	GKGCMC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	10
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	5, 6
BmiI	GGNNCC	2 cut(s)	6, 7
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	94, 202
Bpu1102I	GCTNAGC	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	9
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	7
Bsp120I	GGGCCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	9, 280
Bsp143I	GATC	2 cut(s)	151, 354
Bsp1720I	GCTNAGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	6, 7
BspPI	GGATC	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	151, 354
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	154, 357
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	151, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	5, 6
CviAII	CATG	3 cut(s)	155, 184, 216
CviJI	RGCY	8 cut(s)	7, 13, 18, 36, 59, 76, 307, 320
CviKI_1	RGCY	8 cut(s)	7, 13, 18, 36, 59, 76, 307, 320
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	153, 356
DpnII	GATC	2 cut(s)	151, 354
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	3 cut(s)	158, 187, 219
FaiI	YATR	7 cut(s)	99, 118, 120, 156, 185, 217, 284
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	154, 183, 215
FbaI	TGATCA	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	3 cut(s)	158, 187, 219
HinfI	GANTC	2 cut(s)	84, 259
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	149, 184, 263, 363
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	106, 155
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	206, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	158, 187, 219
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 354
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	6, 22, 46, 58, 162, 226, 248
LweI	GCATC	2 cut(s)	94, 202
MaeII	ACGT	1 cut(s)	27
MalI	GATC	2 cut(s)	153, 356
MboI	GATC	2 cut(s)	151, 354
MboII	GAAGA	2 cut(s)	322, 358
MfeI	CAATTG	1 cut(s)	62
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	2 cut(s)	9, 280
MluCI	AATT	3 cut(s)	62, 191, 333
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	87, 180, 295
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	1 cut(s)	89
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	151, 354
NlaIII	CATG	3 cut(s)	158, 187, 219
NlaIV	GGNNCC	2 cut(s)	6, 7
NsiI	ATGCAT	1 cut(s)	217
PagI	TCATGA	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	6, 7
PspOMI	GGGCCC	1 cut(s)	5
PspPI	GGNCC	2 cut(s)	5, 6
PsuI	RGATCY	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	151, 354
Sau96I	GGNCC	2 cut(s)	5, 6
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	9, 280
SetI	ASST	6 cut(s)	30, 61, 98, 117, 250, 309
SfaNI	GCATC	2 cut(s)	94, 202
Sse9I	AATT	3 cut(s)	62, 191, 333
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	167, 362
TasI	AATT	3 cut(s)	62, 191, 333
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.