Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

14825869 .. 14829521

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTCACTGGCATTCAAGAGCTGCTGCAACATTGTCTGAGGCTGCACGGGCATTGATGGAGATTGATGGTCTTGAACAATCGCAGCAGTGTTTGCAGTCTGAGTTGTCGGGTCTTGTGACAAAGATGATTGTGCAGCCGAGATTATGTGGTGGGCAGGCGTTTGCTTTGTTGGTGCTGATCAATGCCGTCGTCGCTTCTTCGAGGCCGTCGTCTCGGAACCCACGCCGGCGTCGTCAAGAGCCAAGTTACCTTAAGTTTGTTTCCAACGCCACTGACTTCCCATCGGGGGAGTACTATAAGGACTACATTATCAGCGGAGGTGGCACTGCTGGGTGCCCTTTGGCTGCGACACTATCATCCAGGTTTCGGGTCCTCCTGCTCAAAAGTGGTGGTGTTGCTTATGGCAATCAAAACTTGATGTCCCAGGATGGTTTCTGTCAGCACTCATGGATGTCAATGCCTTTGACTCTCCCACACAAGCCTTCACATCTGAAGATGGTGTTCCAAATGTCCAAGGACGCATTCTTGGAGGCAGCAGGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

182

Amino Acids

19.86

Weight (kDa)

9.35

Isoelectric Point (pI)

71.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AciI	CCGC	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	289, 369
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	18, 77
AjnI	CCWGG	2 cut(s)	362, 426
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	219
AoxI	GGCC	2 cut(s)	206, 542
ApeKI	GCWGC	7 cut(s)	23, 26, 44, 85, 136, 347, 536
AspS9I	GGNCC	2 cut(s)	373, 542
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	336
BbvI	GCAGC	6 cut(s)	10, 13, 31, 97, 148, 334
BccI	CCATC	5 cut(s)	52, 62, 292, 425, 493
BceAI	ACGGC	2 cut(s)	173, 193
BciT130I	CCWGG	2 cut(s)	364, 428
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	7 cut(s)	24, 27, 45, 86, 137, 348, 537
BlsI	GCNGC	7 cut(s)	25, 28, 46, 87, 138, 349, 538
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	364, 428
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	373, 542
BmiI	GGNNCC	3 cut(s)	221, 338, 374
BmrFI	CCNGG	2 cut(s)	364, 428
BsaHI	GRCGYC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	426, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 369
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	364, 428
BseDI	CCNNGG	2 cut(s)	426, 516
BseGI	GGATG	3 cut(s)	359, 436, 459
BseLI	CCNNNNNNNGG	2 cut(s)	289, 369
BseMII	CTCAG	2 cut(s)	30, 93
BseNI	ACTGG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	6 cut(s)	10, 13, 31, 97, 148, 334
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	2 cut(s)	30, 155
BshFI	GGCC	2 cut(s)	208, 544
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	289, 369
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	2 cut(s)	13, 524
BsnI	GGCC	2 cut(s)	208, 544
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	208, 544
BspCNI	CTCAG	2 cut(s)	31, 94
BspLI	GGNNCC	3 cut(s)	221, 338, 374
BspT107I	GGYRCC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	426, 516
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	364, 428
BstACI	GRCGYC	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	159, 230
BstDEI	CTNAG	2 cut(s)	39, 102
BstF5I	GGATG	3 cut(s)	359, 436, 459
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 94, 194, 324
BstNI	CCWGG	2 cut(s)	364, 428
BstSCI	CCNGG	2 cut(s)	362, 426
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	6 cut(s)	10, 13, 31, 97, 148, 334
BsuRI	GGCC	2 cut(s)	208, 544
BtsCI	GGATG	3 cut(s)	359, 436, 459
BtsI	GCAGTG	2 cut(s)	95, 327
BtsIMutI	CAGTG	4 cut(s)	7, 95, 273, 327
Cac8I	GCNNGC	2 cut(s)	159, 230
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	373, 542
CseI	GACGC	2 cut(s)	221, 530
Csp6I	GTAC	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	2 cut(s)	450, 546
CviJI	RGCY	8 cut(s)	23, 44, 139, 208, 244, 347, 484, 544
CviKI_1	RGCY	8 cut(s)	23, 44, 139, 208, 244, 347, 484, 544
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	39, 102
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	362, 426
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	453, 549
FaiI	YATR	5 cut(s)	148, 300, 405, 451, 547
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	449, 545
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	7 cut(s)	24, 27, 45, 86, 137, 348, 537
FokI	GGATG	3 cut(s)	346, 443, 466
Fsp4HI	GCNGC	7 cut(s)	24, 27, 45, 86, 137, 348, 537
GluI	GCNGC	7 cut(s)	24, 27, 45, 86, 137, 348, 537
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	208, 544
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	2 cut(s)	221, 530
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	453, 549
HinfI	GANTC	2 cut(s)	4, 469
HpaII	CCGG	1 cut(s)	229
Hpy188I	TCNGA	4 cut(s)	40, 103, 219, 495
Hpy188III	TCNNGA	3 cut(s)	18, 74, 239
Hpy99I	CGWCG	4 cut(s)	194, 197, 214, 237
HpyAV	CCTTC	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	29, 47, 97, 136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 94, 194, 324
HpyF3I	CTNAG	2 cut(s)	39, 102
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	2 cut(s)	453, 549
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	9 cut(s)	143, 242, 318, 349, 376, 392, 413, 440, 525
Lsp1109I	GCAGC	6 cut(s)	10, 13, 31, 97, 148, 334
MaeIII	GTNAC	3 cut(s)	5, 118, 248
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	192, 508
MhlI	GDGCHC	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	13, 463
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	34, 198, 314, 386, 526
MreI	CGCCGGCG	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	228
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	318
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	364, 428
Mva1269I	GAATGC	2 cut(s)	13, 524
MvaI	CCWGG	2 cut(s)	364, 428
MwoI	GCNNNNNNNGC	4 cut(s)	50, 94, 194, 324
NaeI	GCCGGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	453, 549
NlaIV	GGNNCC	3 cut(s)	221, 338, 374
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	5, 118
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 232
PctI	GAATGC	2 cut(s)	13, 524
PdiI	GCCGGC	1 cut(s)	230
PkrI	GCNGC	7 cut(s)	25, 28, 46, 87, 138, 349, 538
PleI	GAGTC	2 cut(s)	12, 463
PpsI	GAGTC	2 cut(s)	12, 463
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	362, 426
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	362, 426
PspN4I	GGNNCC	3 cut(s)	221, 338, 374
PspPI	GGNCC	2 cut(s)	373, 542
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	7 cut(s)	24, 27, 45, 86, 137, 348, 537
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	373, 542
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	2 cut(s)	13, 463
ScrFI	CCNGG	2 cut(s)	364, 428
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	4 cut(s)	25, 255, 325, 368
SgrAI	CRCCGGYG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	362, 426
StyI	CCWWGG	1 cut(s)	516
TaqI	TCGA	1 cut(s)	203
TatI	WGTACW	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	14, 95, 280, 334
TseFI	GTSAC	2 cut(s)	5, 118
TseI	GCWGC	7 cut(s)	23, 26, 44, 85, 136, 347, 536
Tsp45I	GTSAC	2 cut(s)	5, 118
TspRI	CASTG	4 cut(s)	14, 95, 280, 334
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	373
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.