Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Forward (+)

67469535 .. 67470369

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATGTCAACACCTTTGACTCCCCAACACAAGCCTTCACATCTGAAGATGGTGTTCCAAATGTCCGAGGACGCATTCTTGGAGACAGCAGTGTCATAAATACTGGTTTCTATAGCCATGTAGATCACGAATCCTACAAAAGGTCCACTTCCAAATGGGATCTTAAATTGGGGAATGACTTCCATGAGTTGGTTGAAAGAGCAACTGTCTTTAGGCCTGATCTTAGGAATTGGCAGTCAGCAATTCGAGATGGCTTATTGCAAGTTGAAGTGGGAGGTATCACCATGCTGCACTATGAAAACATGGAGAGGTCCTTCTCTCAGCTGCTTCTACTTAGTGGTTTTAGCCTTAGACCTTGTCTTCCATATCTGGAAATCCCAGTCCATGCGCATGCAGCTGAATCAGCCAAAGCCAAAGCCATTGCATCCCCTGCCCACTCTGTCCACTCAAACCCTGGTAACACCAGTACAACAGAGTCCACTAGCCATGCCAAACGGGAAACCTGCGGCTGGATGGGAAGGCTATTGATGGCATTCGCAGTCTTAGCTTACCTCAATGATGATACAGAGGTACGCCTCTCGTTAATGAATAATCTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

201

Amino Acids

22.31

Weight (kDa)

5.96

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	1 cut(s)	507
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	469, 573
AfiI	CCNNNNNNNGG	3 cut(s)	141, 190, 510
AgsI	TTSAA	2 cut(s)	197, 269
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	3 cut(s)	325, 398, 548
AluI	AGCT	3 cut(s)	325, 398, 548
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	289, 325, 395
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	144, 312
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	144, 312
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BbsI	GAAGAC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	276, 312, 407
BccI	CCATC	4 cut(s)	44, 245, 508, 523
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	512
BisI	GCNGC	4 cut(s)	290, 326, 396, 508
BlsI	GCNGC	4 cut(s)	291, 327, 397, 509
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	2 cut(s)	144, 312
BmgT120I	GGNCC	2 cut(s)	144, 312
BmrFI	CCNGG	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	67, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 190, 510
Bse1I	ACTGG	3 cut(s)	109, 380, 465
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	67, 454
BseGI	GGATG	3 cut(s)	10, 425, 519
BseLI	CCNNNNNNNGG	3 cut(s)	141, 190, 510
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	3 cut(s)	109, 380, 465
BseXI	GCAGC	3 cut(s)	276, 312, 407
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	141, 190, 510
BsmAI	GTCTC	1 cut(s)	78
BsmI	GAATGC	2 cut(s)	75, 533
BsnI	GGCC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	124, 160, 220
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	3 cut(s)	109, 380, 465
BssECI	CCNNGG	2 cut(s)	67, 454
BssMI	GATC	3 cut(s)	124, 160, 220
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	5 cut(s)	224, 321, 335, 350, 544
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	3 cut(s)	10, 425, 519
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	3 cut(s)	127, 163, 223
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	124, 160, 220
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 404, 431, 545
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	276, 312, 407
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	10, 425, 519
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	144, 312
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	468, 572
CviAII	CATG	7 cut(s)	119, 185, 286, 304, 386, 392, 488
CviQI	GTAC	2 cut(s)	468, 572
DdeI	CTNAG	5 cut(s)	224, 321, 335, 350, 544
DpnI	GATC	3 cut(s)	126, 162, 222
DpnII	GATC	3 cut(s)	124, 160, 220
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eco147I	AGGCCT	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	144, 312
Eco57I	CTGAAG	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	454
FaeI	CATG	7 cut(s)	122, 188, 289, 307, 389, 395, 491
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FatI	CATG	7 cut(s)	118, 184, 285, 303, 385, 391, 487
Fnu4HI	GCNGC	4 cut(s)	290, 326, 396, 508
FokI	GGATG	3 cut(s)	17, 412, 526
Fsp4HI	GCNGC	4 cut(s)	290, 326, 396, 508
FspAI	RTGCGCAY	1 cut(s)	390
FspBI	CTAG	1 cut(s)	483
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	4 cut(s)	290, 326, 396, 508
HaeIII	GGCC	1 cut(s)	217
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	7 cut(s)	122, 188, 289, 307, 389, 395, 491
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	4 cut(s)	20, 131, 401, 476
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	4 cut(s)	10, 147, 445, 480
Hpy188I	TCNGA	2 cut(s)	46, 68
Hpy188III	TCNNGA	3 cut(s)	128, 248, 371
Hpy8I	GTNNAC	4 cut(s)	10, 147, 445, 480
HpyAV	CCTTC	3 cut(s)	46, 325, 513
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	262, 292, 395, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 404, 431, 545
HpyF3I	CTNAG	5 cut(s)	224, 321, 335, 350, 544
Hsp92II	CATG	7 cut(s)	122, 188, 289, 307, 389, 395, 491
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	3 cut(s)	124, 160, 220
Lsp1109I	GCAGC	3 cut(s)	276, 312, 407
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	3 cut(s)	126, 162, 222
MboI	GATC	3 cut(s)	124, 160, 220
MboII	GAAGA	2 cut(s)	59, 353
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	3 cut(s)	167, 229, 243
MlyI	GAGTC	2 cut(s)	14, 485
MnlI	CCTC	6 cut(s)	62, 269, 303, 562, 563, 587
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	2 cut(s)	165, 584
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	325, 398
MspR9I	CCNGG	1 cut(s)	456
Mva1269I	GAATGC	2 cut(s)	75, 533
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	395, 404, 431, 545
NdeII	GATC	3 cut(s)	124, 160, 220
NlaIII	CATG	7 cut(s)	122, 188, 289, 307, 389, 395, 491
NsbI	TGCGCA	1 cut(s)	390
NspI	RCATGY	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	217
PctI	GAATGC	2 cut(s)	75, 533
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	131, 401
PflFI	GACNNNGTC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	291, 327, 397, 509
PleI	GAGTC	2 cut(s)	14, 484
PpsI	GAGTC	2 cut(s)	14, 484
PpuMI	RGGWCCY	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	144, 312
PspPPI	RGGWCCY	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	357
PvuII	CAGCTG	2 cut(s)	325, 398
RsaI	GTAC	2 cut(s)	469, 573
RsaNI	GTAC	2 cut(s)	468, 572
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	165, 584
SatI	GCNGC	4 cut(s)	290, 326, 396, 508
Sau3AI	GATC	3 cut(s)	124, 160, 220
Sau96I	GGNCC	2 cut(s)	144, 312
SchI	GAGTC	2 cut(s)	14, 485
ScrFI	CCNGG	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	144, 312
SmiMI	CAYNNNNRTG	1 cut(s)	390
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	167, 229, 243
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	507
SspMI	CTAG	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	167, 229, 243
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	131, 401
Tru1I	TTAA	2 cut(s)	165, 584
Tru9I	TTAA	2 cut(s)	165, 584
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	3 cut(s)	289, 325, 395
TspDTI	ATGAA	2 cut(s)	312, 602
TspRI	CASTG	1 cut(s)	97
Tth111I	GACNNNGTC	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	144, 312
XagI	CCTNNNNNAGG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.