Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

10394989 .. 10397505

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGGCTCTTCTACGCCAACAGCTCCGCCCTCCTCTCCCGCTTCCCTTAATTCACAGTCACTCTTCAACCCACCATTTCCCAAAACCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACGTTTCTCTCTCTACTCAGCTCCTCCTACTCCCACTTCCAGCTCCTCAGCCTCCATTTTCCTTCCATTTCTCCAAGACGAAGAAGAAGCAGAAGAAGAAGAAGAGGACCATGAAGTTGAAGATGAAGCTGAAGAAGAAGAGGACCCAGATGACCCAATTGTCAGATTCTTCAAGTCTCGGACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTCTCTCTGCAGAAGAACCGCCGCTCTTCTTGGCACTTGGCTGACGATTTAGACCATTCCGCAAGCGATTCCGGCGTCGACCCAGTGCTGGAAGCACAAAAACAACAACTGGGTCCGGTGGATTCCGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCCGCAGAATATGACACTGGGAGAGGAACTGGGAGGTTTTGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAAGGATTGCTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTGCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAAAAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCAAACGCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATGTGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCGGTGGCTGGCATGAGAAAGCTTACATCGCATTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATTAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTGAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCGAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTCGCGAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

716

Amino Acids

81.08

Weight (kDa)

7.23

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	260 - 305	1.6e-10	PPR repeat family
PPR_long	PF17177	274 - 411	3.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	321 - 380	9.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	338 - 380	4.8e-07	PPR repeat family
PPR_3	PF13812	358 - 414	1.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	362 - 395	1.4e-08	PPR repeat
PPR_2	PF13041	367 - 414	9.9e-17	PPR repeat family
PPR	PF01535	370 - 399	9e-09	PPR repeat
PPR_long	PF17177	391 - 494	2.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	401 - 448	4.7e-09	PPR repeat family
PPR_3	PF13812	424 - 484	5.6e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	426 - 551	1.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	436 - 484	2.9e-09	PPR repeat family
PPR_2	PF13041	475 - 519	1.7e-08	PPR repeat family
PPR_3	PF13812	497 - 552	2.5e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	507 - 556	2e-08	PPR repeat family
PPR_2	PF13041	545 - 591	3.5e-09	PPR repeat family
PPR_3	PF13812	545 - 589	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	577 - 624	5.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	795, 1019
AasI	GACNNNNNNGTC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	2 cut(s)	408, 1430
AccII	CGCG	3 cut(s)	1130, 1878, 1991
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	7 cut(s)	25, 38, 349, 352, 390, 518, 1876
AclWI	GGATC	2 cut(s)	894, 1097
AcsI	RAATTY	2 cut(s)	1590, 1706
AcuI	CTGAAG	3 cut(s)	267, 1064, 1182
AcvI	CACGTG	1 cut(s)	1772
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	418, 710
AflIII	ACRYGT	3 cut(s)	896, 1128, 1325
AjiI	CACGTC	1 cut(s)	897
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 758, 790
Alw21I	GWGCWC	3 cut(s)	102, 824, 1015
Alw26I	GTCTC	2 cut(s)	297, 851
AlwI	GGATC	2 cut(s)	894, 1097
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	1 cut(s)	811
ApeKI	GCWGC	4 cut(s)	800, 1252, 1373, 1726
ApoI	RAATTY	2 cut(s)	1590, 1706
AseI	ATTAAT	1 cut(s)	2034
Asp700I	GAANNNNTTC	1 cut(s)	773
AspA2I	CCTAGG	1 cut(s)	680
AspS9I	GGNCC	3 cut(s)	223, 259, 443
AsuHPI	GGTGA	2 cut(s)	617, 1645
AvaII	GGWCC	3 cut(s)	223, 259, 443
AvrII	CCTAGG	1 cut(s)	680
BbrPI	CACGTG	1 cut(s)	1772
Bbv12I	GWGCWC	3 cut(s)	102, 824, 1015
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	787, 1264, 1360, 1738
BccI	CCATC	9 cut(s)	470, 595, 643, 856, 1222, 1649, 1807, 1912, 2038
BcoDI	GTCTC	2 cut(s)	297, 851
BfaI	CTAG	2 cut(s)	507, 681
BfmI	CTRYAG	2 cut(s)	338, 1374
BisI	GCNGC	6 cut(s)	352, 518, 801, 1253, 1374, 1727
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	6 cut(s)	353, 519, 802, 1254, 1375, 1728
Bme18I	GGWCC	3 cut(s)	223, 259, 443
BmgBI	CACGTC	1 cut(s)	897
BmgT120I	GGNCC	3 cut(s)	223, 259, 443
BmiI	GGNNCC	4 cut(s)	261, 444, 663, 1305
BmrI	ACTGGG	4 cut(s)	407, 449, 542, 554
BmsI	GCATC	6 cut(s)	829, 937, 1222, 1369, 1540, 1933
BmuI	ACTGGG	4 cut(s)	407, 449, 542, 554
Bpu10I	CCTNAGC	2 cut(s)	163, 1964
BpuEI	CTTGAG	1 cut(s)	1876
BsaAI	YACGTR	1 cut(s)	1772
BsaBI	GATNNNNATC	2 cut(s)	462, 914
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	2 cut(s)	445, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 710
Bse1I	ACTGG	4 cut(s)	413, 444, 537, 549
Bse8I	GATNNNNATC	2 cut(s)	462, 914
BseAI	TCCGGA	1 cut(s)	883
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	8 cut(s)	654, 787, 1237, 1297, 1398, 1555, 1872, 1984
BseJI	GATNNNNATC	2 cut(s)	462, 914
BseLI	CCNNNNNNNGG	2 cut(s)	418, 710
BseMII	CTCAG	6 cut(s)	147, 177, 1167, 1248, 1379, 1566
BseNI	ACTGG	4 cut(s)	413, 444, 537, 549
BseRI	GAGGAG	3 cut(s)	21, 129, 151
BseXI	GCAGC	4 cut(s)	787, 1264, 1360, 1738
Bsh1236I	CGCG	3 cut(s)	1130, 1878, 1991
BshFI	GGCC	1 cut(s)	813
BsiHKAI	GWGCWC	3 cut(s)	102, 824, 1015
BsiSI	CCGG	3 cut(s)	402, 446, 884
BslFI	GGGAC	3 cut(s)	968, 1398, 1639
BslI	CCNNNNNNNGG	2 cut(s)	418, 710
BsmAI	GTCTC	2 cut(s)	297, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	3 cut(s)	968, 1398, 1639
BsmI	GAATGC	2 cut(s)	1254, 1765
BsnI	GGCC	1 cut(s)	813
Bsp1286I	GDGCHC	3 cut(s)	102, 824, 1015
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	3 cut(s)	886, 1089, 1860
Bsp68I	TCGCGA	1 cut(s)	1991
BspACI	CCGC	7 cut(s)	25, 38, 349, 352, 390, 518, 1876
BspANI	GGCC	1 cut(s)	813
BspCNI	CTCAG	6 cut(s)	146, 176, 1168, 1249, 1380, 1567
BspEI	TCCGGA	1 cut(s)	883
BspFNI	CGCG	3 cut(s)	1130, 1878, 1991
BspHI	TCATGA	1 cut(s)	918
BspLI	GGNNCC	4 cut(s)	261, 444, 663, 1305
BspMAI	CTGCAG	2 cut(s)	342, 1378
BspPI	GGATC	2 cut(s)	894, 1097
BspQI	GCTCTTC	2 cut(s)	12, 361
BsrBI	CCGCTC	1 cut(s)	354
BsrI	ACTGG	4 cut(s)	413, 444, 537, 549
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	3 cut(s)	886, 1089, 1860
BssNAI	GTATAC	1 cut(s)	1431
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	1431
Bst4CI	ACNGT	3 cut(s)	56, 1241, 1735
Bst6I	CTCTTC	7 cut(s)	12, 67, 213, 249, 361, 1040, 1653
BstACI	GRCGYC	1 cut(s)	405
BstAPI	GCANNNNNTGC	2 cut(s)	947, 2126
BstBAI	YACGTR	1 cut(s)	1772
BstC8I	GCNNGC	6 cut(s)	329, 394, 1466, 1563, 1567, 1880
BstDEI	CTNAG	9 cut(s)	113, 133, 163, 1176, 1257, 1388, 1575, 1629, 1964
BstF5I	GGATG	8 cut(s)	654, 787, 1237, 1297, 1398, 1555, 1872, 1984
BstFNI	CGCG	3 cut(s)	1130, 1878, 1991
BstKTI	GATC	3 cut(s)	889, 1092, 1863
BstMAI	GTCTC	2 cut(s)	297, 851
BstMBI	GATC	3 cut(s)	886, 1089, 1860
BstMWI	GCNNNNNNNGC	7 cut(s)	337, 402, 819, 947, 1379, 1484, 2126
BstNSI	RCATGY	3 cut(s)	791, 1329, 1501
BstSFI	CTRYAG	2 cut(s)	338, 1374
BstUI	CGCG	3 cut(s)	1130, 1878, 1991
BstV1I	GCAGC	4 cut(s)	787, 1264, 1360, 1738
BstX2I	RGATCY	1 cut(s)	1089
BstYI	RGATCY	1 cut(s)	1089
BstZ17I	GTATAC	1 cut(s)	1431
BsuRI	GGCC	1 cut(s)	813
BtgZI	GCGATG	1 cut(s)	1468
BtrI	CACGTC	1 cut(s)	897
BtsCI	GGATG	8 cut(s)	654, 787, 1237, 1297, 1398, 1555, 1872, 1984
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	5 cut(s)	420, 530, 943, 1572, 1740
BtuMI	TCGCGA	1 cut(s)	1991
Cac8I	GCNNGC	6 cut(s)	329, 394, 1466, 1563, 1567, 1880
CciI	TCATGA	1 cut(s)	918
Cfr13I	GGNCC	3 cut(s)	223, 259, 443
CseI	GACGC	1 cut(s)	394
CspCI	CAANNNNNGTGG	4 cut(s)	1677, 1712, 1785, 1820
DdeI	CTNAG	9 cut(s)	113, 133, 163, 1176, 1257, 1388, 1575, 1629, 1964
DpnI	GATC	3 cut(s)	888, 1091, 1862
DpnII	GATC	3 cut(s)	886, 1089, 1860
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	7 cut(s)	12, 67, 213, 249, 361, 1040, 1653
EarI	CTCTTC	7 cut(s)	12, 67, 213, 249, 361, 1040, 1653
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	680
Eco47I	GGWCC	3 cut(s)	223, 259, 443
Eco57I	CTGAAG	3 cut(s)	267, 1064, 1182
Eco72I	CACGTG	1 cut(s)	1772
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	6 cut(s)	952, 1237, 1384, 1450, 1555, 1765
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	851
FaqI	GGGAC	3 cut(s)	968, 1398, 1639
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	1765
FblI	GTMKAC	2 cut(s)	408, 1430
Fnu4HI	GCNGC	6 cut(s)	352, 518, 801, 1253, 1374, 1727
FokI	GGATG	8 cut(s)	661, 794, 1244, 1304, 1405, 1562, 1859, 1991
Fsp4HI	GCNGC	6 cut(s)	352, 518, 801, 1253, 1374, 1727
FspBI	CTAG	2 cut(s)	507, 681
GluI	GCNGC	6 cut(s)	352, 518, 801, 1253, 1374, 1727
HaeIII	GGCC	1 cut(s)	813
HapII	CCGG	3 cut(s)	402, 446, 884
HgaI	GACGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	405
HincII	GTYRAC	2 cut(s)	409, 2134
HindII	GTYRAC	2 cut(s)	409, 2134
HindIII	AAGCTT	3 cut(s)	1271, 1476, 1961
HinfI	GANTC	6 cut(s)	282, 398, 452, 458, 994, 1838
HpaI	GTTAAC	1 cut(s)	2134
HpaII	CCGG	3 cut(s)	402, 446, 884
HphI	GGTGA	2 cut(s)	617, 1645
Hpy166II	GTNNAC	3 cut(s)	409, 1431, 2134
Hpy188I	TCNGA	7 cut(s)	281, 297, 457, 475, 1227, 1389, 1705
Hpy188III	TCNNGA	8 cut(s)	884, 919, 998, 1652, 1682, 1893, 1990, 2089
Hpy8I	GTNNAC	3 cut(s)	409, 1431, 2134
Hpy99I	CGWCG	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	56, 1241, 1735
HpyCH4IV	ACGT	3 cut(s)	118, 896, 1771
HpyF10VI	GCNNNNNNNGC	7 cut(s)	337, 402, 819, 947, 1379, 1484, 2126
HpyF3I	CTNAG	9 cut(s)	113, 133, 163, 1176, 1257, 1388, 1575, 1629, 1964
HpySE526I	ACGT	3 cut(s)	118, 896, 1771
Hsp92I	GRCGYC	1 cut(s)	405
Kpn2I	TCCGGA	1 cut(s)	883
KspAI	GTTAAC	1 cut(s)	2134
Kzo9I	GATC	3 cut(s)	886, 1089, 1860
LguI	GCTCTTC	2 cut(s)	12, 361
LmnI	GCTCC	5 cut(s)	27, 142, 164, 661, 1303
Lsp1109I	GCAGC	4 cut(s)	787, 1264, 1360, 1738
LweI	GCATC	6 cut(s)	829, 937, 1222, 1369, 1540, 1933
MaeI	CTAG	2 cut(s)	507, 681
MaeII	ACGT	3 cut(s)	118, 896, 1771
MaeIII	GTNAC	6 cut(s)	56, 673, 892, 1364, 1633, 1843
MalI	GATC	3 cut(s)	888, 1091, 1862
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	3 cut(s)	886, 1089, 1860
MfeI	CAATTG	2 cut(s)	273, 988
MflI	RGATCY	1 cut(s)	1089
MhlI	GDGCHC	3 cut(s)	102, 824, 1015
MluI	ACGCGT	1 cut(s)	1128
MlyI	GAGTC	2 cut(s)	1003, 1832
MmeI	TCCRAC	1 cut(s)	466
Mph1103I	ATGCAT	6 cut(s)	952, 1237, 1384, 1450, 1555, 1765
MroI	TCCGGA	1 cut(s)	883
MroXI	GAANNNNTTC	1 cut(s)	773
MslI	CAYNNNNRTG	2 cut(s)	1577, 1877
MspA1I	CMGCKG	1 cut(s)	1801
MspI	CCGG	3 cut(s)	402, 446, 884
MunI	CAATTG	2 cut(s)	273, 988
Mva1269I	GAATGC	2 cut(s)	1254, 1765
MvnI	CGCG	3 cut(s)	1130, 1878, 1991
MwoI	GCNNNNNNNGC	7 cut(s)	337, 402, 819, 947, 1379, 1484, 2126
NdeI	CATATG	1 cut(s)	1765
NdeII	GATC	3 cut(s)	886, 1089, 1860
NlaIV	GGNNCC	4 cut(s)	261, 444, 663, 1305
NmuCI	GTSAC	4 cut(s)	56, 892, 1364, 1633
NruI	TCGCGA	1 cut(s)	1991
NsiI	ATGCAT	6 cut(s)	952, 1237, 1384, 1450, 1555, 1765
NspI	RCATGY	3 cut(s)	791, 1329, 1501
PagI	TCATGA	1 cut(s)	918
PciI	ACATGT	1 cut(s)	1325
PciSI	GCTCTTC	2 cut(s)	12, 361
PctI	GAATGC	2 cut(s)	1254, 1765
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	4 cut(s)	282, 398, 452, 458
PkrI	GCNGC	6 cut(s)	353, 519, 802, 1254, 1375, 1728
PleI	GAGTC	2 cut(s)	1002, 1832
PmaCI	CACGTG	1 cut(s)	1772
PmlI	CACGTG	1 cut(s)	1772
PpsI	GAGTC	2 cut(s)	1002, 1832
Ppu21I	YACGTR	1 cut(s)	1772
PpuMI	RGGWCCY	1 cut(s)	259
PscI	ACATGT	1 cut(s)	1325
PshBI	ATTAAT	1 cut(s)	2034
PsiI	TTATAA	2 cut(s)	795, 1019
Psp5II	RGGWCCY	1 cut(s)	259
PspCI	CACGTG	1 cut(s)	1772
PspN4I	GGNNCC	4 cut(s)	261, 444, 663, 1305
PspPI	GGNCC	3 cut(s)	223, 259, 443
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	2 cut(s)	342, 1378
PsuI	RGATCY	1 cut(s)	1089
PvuII	CAGCTG	1 cut(s)	1801
RruI	TCGCGA	1 cut(s)	1991
RseI	CAYNNNNRTG	2 cut(s)	1577, 1877
SalI	GTCGAC	1 cut(s)	407
SapI	GCTCTTC	2 cut(s)	12, 361
SatI	GCNGC	6 cut(s)	352, 518, 801, 1253, 1374, 1727
Sau3AI	GATC	3 cut(s)	886, 1089, 1860
Sau96I	GGNCC	3 cut(s)	223, 259, 443
SchI	GAGTC	2 cut(s)	1003, 1832
SduI	GDGCHC	3 cut(s)	102, 824, 1015
SfaNI	GCATC	6 cut(s)	829, 937, 1222, 1369, 1540, 1933
SfcI	CTRYAG	2 cut(s)	338, 1374
SinI	GGWCC	3 cut(s)	223, 259, 443
SmiMI	CAYNNNNRTG	2 cut(s)	1577, 1877
SmlI	CTYRAG	1 cut(s)	1891
SmoI	CTYRAG	1 cut(s)	1891
SsiI	CCGC	7 cut(s)	25, 38, 349, 352, 390, 518, 1876
SspI	AATATT	1 cut(s)	1222
SspMI	CTAG	2 cut(s)	507, 681
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	3 cut(s)	56, 1241, 1735
TaiI	ACGT	3 cut(s)	121, 899, 1774
TaqI	TCGA	2 cut(s)	408, 902
TauI	GCSGC	2 cut(s)	354, 520
TfiI	GAWTC	4 cut(s)	282, 398, 452, 458
TscAI	CASTG	5 cut(s)	420, 537, 943, 1579, 1740
TseFI	GTSAC	4 cut(s)	56, 892, 1364, 1633
TseI	GCWGC	4 cut(s)	800, 1252, 1373, 1726
Tsp45I	GTSAC	4 cut(s)	56, 892, 1364, 1633
TspDTI	ATGAA	8 cut(s)	243, 255, 849, 986, 1139, 1196, 1409, 1772
TspRI	CASTG	5 cut(s)	420, 537, 943, 1579, 1740
VpaK11BI	GGWCC	3 cut(s)	223, 259, 443
VspI	ATTAAT	1 cut(s)	2034
XapI	RAATTY	2 cut(s)	1590, 1706
XceI	RCATGY	3 cut(s)	791, 1329, 1501
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	2 cut(s)	408, 1430
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	2 cut(s)	507, 681
Zsp2I	ATGCAT	6 cut(s)	952, 1237, 1384, 1450, 1555, 1765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.