Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

9521735 .. 9523722

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGACACTGGGAGAGGAATTGGTAGGTTTTGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAAGGATTGCTATTGGGTTGCTTGTATTTCTTTGAGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTGCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAAAAGGTATGGCATTCCCATATTGATGGAAGCAAATAATACCTTTCCGGATCATGTGACGTGTTCGATAATGATTACTGTCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCAAACGCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATGTGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGCCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCAGTGGCTGGCATGAGAAAGCTTACATCGCATTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGGAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTGAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTCGCGAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

507

Amino Acids

57.29

Weight (kDa)

9.22

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	120 - 219	1.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	129 - 188	6.4e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	166 - 222	9.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	170 - 203	8.9e-09	PPR repeat
PPR_2	PF13041	175 - 222	6.3e-17	PPR repeat family
PPR	PF01535	178 - 207	5.9e-09	PPR repeat
PPR_long	PF17177	199 - 328	1.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	213 - 256	7.4e-09	PPR repeat family
PPR_3	PF13812	232 - 292	3.4e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	247 - 292	4.8e-08	PPR repeat family
TPR_24	PF23276	260 - 341	1.9e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	284 - 327	5.3e-09	PPR repeat family
PPR_3	PF13812	284 - 327	1e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	328 - 380	2.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	336 - 382	2e-09	PPR repeat family
PPR_2	PF13041	368 - 415	3.7e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 443
AccI	GTMKAC	1 cut(s)	854
AccII	CGCG	3 cut(s)	554, 1251, 1364
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	1 cut(s)	1249
AclWI	GGATC	2 cut(s)	318, 521
AcsI	RAATTY	1 cut(s)	1079
AcuI	CTGAAG	2 cut(s)	488, 606
AcvI	CACGTG	1 cut(s)	1145
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	3 cut(s)	320, 552, 749
AjiI	CACGTC	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	1319
AjuI	GAANNNNNNNTTGG	4 cut(s)	24, 56, 194, 226
AluBI	AGCT	8 cut(s)	155, 172, 584, 697, 860, 902, 1174, 1336
AluI	AGCT	8 cut(s)	155, 172, 584, 697, 860, 902, 1174, 1336
Alw21I	GWGCWC	2 cut(s)	260, 439
AlwI	GGATC	2 cut(s)	318, 521
AlwNI	CAGNNNCTG	1 cut(s)	888
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	4 cut(s)	236, 676, 797, 1099
ApoI	RAATTY	1 cut(s)	1079
AseI	ATTAAT	1 cut(s)	1407
Asp700I	GAANNNNTTC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	92, 1018
BbrPI	CACGTG	1 cut(s)	1145
Bbv12I	GWGCWC	2 cut(s)	260, 439
BbvI	GCAGC	4 cut(s)	223, 688, 784, 1111
BccI	CCATC	7 cut(s)	70, 280, 646, 1022, 1180, 1285, 1411
BciT130I	CCWGG	1 cut(s)	1321
BfmI	CTRYAG	1 cut(s)	798
BisI	GCNGC	4 cut(s)	237, 677, 798, 1100
BlsI	GCNGC	4 cut(s)	238, 678, 799, 1101
Bme1390I	CCNGG	1 cut(s)	1321
BmgBI	CACGTC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	1 cut(s)	1321
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	5 cut(s)	361, 646, 793, 964, 1306
BmuI	ACTGGG	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	1337
BpuEI	CTTGAG	1 cut(s)	1249
BsaAI	YACGTR	1 cut(s)	1145
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	1321
BseGI	GGATG	7 cut(s)	223, 661, 721, 822, 979, 1245, 1357
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	3 cut(s)	591, 672, 803
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	223, 688, 784, 1111
Bsh1236I	CGCG	3 cut(s)	554, 1251, 1364
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	260, 439
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	392, 1012
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	392, 1012
BsmI	GAATGC	3 cut(s)	273, 678, 1138
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	260, 439
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	310, 513, 1233
Bsp68I	TCGCGA	1 cut(s)	1364
BspACI	CCGC	1 cut(s)	1249
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	3 cut(s)	592, 673, 804
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	554, 1251, 1364
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	729
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	2 cut(s)	318, 521
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	310, 513, 1233
BssNAI	GTATAC	1 cut(s)	855
Bst1107I	GTATAC	1 cut(s)	855
Bst2UI	CCWGG	1 cut(s)	1321
Bst4CI	ACNGT	3 cut(s)	340, 665, 1108
Bst6I	CTCTTC	2 cut(s)	464, 1026
BstAPI	GCANNNNNTGC	2 cut(s)	371, 1499
BstBAI	YACGTR	1 cut(s)	1145
BstC8I	GCNNGC	2 cut(s)	890, 1253
BstDEI	CTNAG	5 cut(s)	600, 681, 812, 1002, 1337
BstF5I	GGATG	7 cut(s)	223, 661, 721, 822, 979, 1245, 1357
BstFNI	CGCG	3 cut(s)	554, 1251, 1364
BstKTI	GATC	3 cut(s)	313, 516, 1236
BstMBI	GATC	3 cut(s)	310, 513, 1233
BstMWI	GCNNNNNNNGC	5 cut(s)	255, 371, 803, 908, 1499
BstNI	CCWGG	1 cut(s)	1321
BstNSI	RCATGY	3 cut(s)	227, 753, 925
BstSCI	CCNGG	1 cut(s)	1319
BstSFI	CTRYAG	1 cut(s)	798
BstUI	CGCG	3 cut(s)	554, 1251, 1364
BstV1I	GCAGC	4 cut(s)	223, 688, 784, 1111
BstX2I	RGATCY	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	892
BtrI	CACGTC	1 cut(s)	321
BtsCI	GGATG	7 cut(s)	223, 661, 721, 822, 979, 1245, 1357
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	4 cut(s)	5, 367, 889, 1113
BtuMI	TCGCGA	1 cut(s)	1364
Cac8I	GCNNGC	2 cut(s)	890, 1253
CaiI	CAGNNNCTG	1 cut(s)	888
CciI	TCATGA	1 cut(s)	342
CspCI	CAANNNNNGTGG	4 cut(s)	1050, 1085, 1158, 1193
DdeI	CTNAG	5 cut(s)	600, 681, 812, 1002, 1337
DpnI	GATC	3 cut(s)	312, 515, 1235
DpnII	GATC	3 cut(s)	310, 513, 1233
Eam1104I	CTCTTC	2 cut(s)	464, 1026
EarI	CTCTTC	2 cut(s)	464, 1026
Eco57I	CTGAAG	2 cut(s)	488, 606
Eco72I	CACGTG	1 cut(s)	1145
EcoRII	CCWGG	1 cut(s)	1319
EcoT22I	ATGCAT	6 cut(s)	376, 661, 808, 874, 979, 1138
FaqI	GGGAC	2 cut(s)	392, 1012
FauNDI	CATATG	1 cut(s)	1138
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	4 cut(s)	237, 677, 798, 1100
FokI	GGATG	7 cut(s)	230, 668, 728, 829, 986, 1232, 1364
Fsp4HI	GCNGC	4 cut(s)	237, 677, 798, 1100
GluI	GCNGC	4 cut(s)	237, 677, 798, 1100
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	1507
HindII	GTYRAC	1 cut(s)	1507
HindIII	AAGCTT	3 cut(s)	695, 900, 1334
HinfI	GANTC	2 cut(s)	418, 1211
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	92, 1018
Hpy166II	GTNNAC	2 cut(s)	855, 1507
Hpy188I	TCNGA	3 cut(s)	651, 813, 1078
Hpy188III	TCNNGA	8 cut(s)	308, 343, 422, 1025, 1055, 1266, 1363, 1462
Hpy8I	GTNNAC	2 cut(s)	855, 1507
HpyCH4III	ACNGT	3 cut(s)	340, 665, 1108
HpyCH4IV	ACGT	2 cut(s)	320, 1144
HpyF10VI	GCNNNNNNNGC	5 cut(s)	255, 371, 803, 908, 1499
HpyF3I	CTNAG	5 cut(s)	600, 681, 812, 1002, 1337
HpySE526I	ACGT	2 cut(s)	320, 1144
Kpn2I	TCCGGA	1 cut(s)	307
KspAI	GTTAAC	1 cut(s)	1507
Kzo9I	GATC	3 cut(s)	310, 513, 1233
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	4 cut(s)	223, 688, 784, 1111
LweI	GCATC	5 cut(s)	361, 646, 793, 964, 1306
MaeII	ACGT	2 cut(s)	320, 1144
MaeIII	GTNAC	4 cut(s)	316, 788, 1006, 1216
MalI	GATC	3 cut(s)	312, 515, 1235
MboI	GATC	3 cut(s)	310, 513, 1233
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	260, 439
MluI	ACGCGT	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	427, 1205
Mph1103I	ATGCAT	6 cut(s)	376, 661, 808, 874, 979, 1138
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	8 cut(s)	186, 545, 621, 642, 938, 1407, 1434, 1506
MslI	CAYNNNNRTG	2 cut(s)	284, 1250
MspA1I	CMGCKG	1 cut(s)	1174
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	1321
MunI	CAATTG	1 cut(s)	412
Mva1269I	GAATGC	3 cut(s)	273, 678, 1138
MvaI	CCWGG	1 cut(s)	1321
MvnI	CGCG	3 cut(s)	554, 1251, 1364
MwoI	GCNNNNNNNGC	5 cut(s)	255, 371, 803, 908, 1499
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	3 cut(s)	310, 513, 1233
NlaIV	GGNNCC	1 cut(s)	729
NmuCI	GTSAC	3 cut(s)	316, 788, 1006
NruI	TCGCGA	1 cut(s)	1364
NsiI	ATGCAT	6 cut(s)	376, 661, 808, 874, 979, 1138
NspI	RCATGY	3 cut(s)	227, 753, 925
PagI	TCATGA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	749
PctI	GAATGC	3 cut(s)	273, 678, 1138
PdmI	GAANNNNTTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	238, 678, 799, 1101
PleI	GAGTC	2 cut(s)	426, 1205
PmaCI	CACGTG	1 cut(s)	1145
PmlI	CACGTG	1 cut(s)	1145
PpsI	GAGTC	2 cut(s)	426, 1205
Ppu21I	YACGTR	1 cut(s)	1145
PscI	ACATGT	1 cut(s)	749
PshBI	ATTAAT	1 cut(s)	1407
PsiI	TTATAA	2 cut(s)	231, 443
Psp6I	CCWGG	1 cut(s)	1319
PspCI	CACGTG	1 cut(s)	1145
PspGI	CCWGG	1 cut(s)	1319
PspN4I	GGNNCC	1 cut(s)	729
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	888
PsuI	RGATCY	1 cut(s)	513
PvuII	CAGCTG	1 cut(s)	1174
RruI	TCGCGA	1 cut(s)	1364
RseI	CAYNNNNRTG	2 cut(s)	284, 1250
SaqAI	TTAA	8 cut(s)	186, 545, 621, 642, 938, 1407, 1434, 1506
SatI	GCNGC	4 cut(s)	237, 677, 798, 1100
Sau3AI	GATC	3 cut(s)	310, 513, 1233
SchI	GAGTC	2 cut(s)	427, 1205
ScrFI	CCNGG	1 cut(s)	1321
SduI	GDGCHC	2 cut(s)	260, 439
SfaNI	GCATC	5 cut(s)	361, 646, 793, 964, 1306
SfcI	CTRYAG	1 cut(s)	798
SmiMI	CAYNNNNRTG	2 cut(s)	284, 1250
SmlI	CTYRAG	1 cut(s)	1264
SmoI	CTYRAG	1 cut(s)	1264
SsiI	CCGC	1 cut(s)	1249
SspI	AATATT	1 cut(s)	646
StyD4I	CCNGG	1 cut(s)	1319
TaaI	ACNGT	3 cut(s)	340, 665, 1108
TaiI	ACGT	2 cut(s)	323, 1147
TaqI	TCGA	1 cut(s)	326
Tru1I	TTAA	8 cut(s)	186, 545, 621, 642, 938, 1407, 1434, 1506
Tru9I	TTAA	8 cut(s)	186, 545, 621, 642, 938, 1407, 1434, 1506
TscAI	CASTG	4 cut(s)	12, 367, 889, 1113
TseFI	GTSAC	3 cut(s)	316, 788, 1006
TseI	GCWGC	4 cut(s)	236, 676, 797, 1099
Tsp45I	GTSAC	3 cut(s)	316, 788, 1006
TspDTI	ATGAA	5 cut(s)	410, 563, 620, 833, 1145
TspRI	CASTG	4 cut(s)	12, 367, 889, 1113
VspI	ATTAAT	1 cut(s)	1407
XapI	RAATTY	1 cut(s)	1079
XceI	RCATGY	3 cut(s)	227, 753, 925
XmiI	GTMKAC	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	209
Zsp2I	ATGCAT	6 cut(s)	376, 661, 808, 874, 979, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.