Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

9398133 .. 9400654

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGCTCTCCTACGCCAACAGCTCCGTCCTCCTCTCCCGCTTCCCTTAATTCACAGTCACTCCTCAACCCACCATTTCCCAAAACCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACGTTTCTCTCTATACTCAGCTCCTCCTACTCCCACTTCCAGCTCCTCAGCCTCCATTTTCCTTTCATTTCTCCAAGACGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAGGACCTTGAAGGTGAAGATGAACAAGAAGAAGAGGACACAGATGACCCAATTGTCAGATTCTTCAAGTCTCGGACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTCTCTCTGCAGAAGAACCGCCGCTCTTCTTGGCACTTGGCTGACGATTTAGACCATTCCGCAAGCGATTCCGGCGTCGACCCAGTGCTGGAAACACAAAAAAAACAACTGGGTCCGGTGGATTCCGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCGGCAGAATATGACACTGGGAGAGGAATTGGGAGGTTTTGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAAGGATTGCTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAAAAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCAATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCAAACGCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATATGGGATTGGAGCCAAATGTCAAATCCTATACAGGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCGGTGGCTGGCATGAGAAAGCTTACATCACATTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATTAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTGAATTTGAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGGGCTTTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTGGCAAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

717

Amino Acids

81.3

Weight (kDa)

7.58

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	261 - 306	1.6e-10	PPR repeat family
PPR_long	PF17177	275 - 412	3.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	322 - 381	9.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	339 - 381	4.8e-07	PPR repeat family
PPR_3	PF13812	359 - 415	1.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	363 - 396	1.4e-08	PPR repeat
PPR_2	PF13041	368 - 415	9.9e-17	PPR repeat family
PPR	PF01535	371 - 400	9e-09	PPR repeat
PPR_long	PF17177	391 - 495	2.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	402 - 449	4.9e-09	PPR repeat family
PPR_3	PF13812	425 - 485	4.9e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	453 - 519	1e-05	Fungal tetratrico peptide repeats
PPR_long	PF17177	458 - 559	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	477 - 520	2.1e-08	PPR repeat family
PPR_3	PF13812	498 - 553	2.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	508 - 557	2e-08	PPR repeat family
PPR_2	PF13041	546 - 592	3.4e-09	PPR repeat family
PPR_3	PF13812	546 - 590	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	578 - 625	5.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	798, 1022
AasI	GACNNNNNNGTC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	411, 1433
AccII	CGCG	2 cut(s)	1133, 1881
AccIII	TCCGGA	1 cut(s)	886
AciI	CCGC	6 cut(s)	38, 352, 355, 393, 520, 1879
AclWI	GGATC	2 cut(s)	897, 1100
AcsI	RAATTY	3 cut(s)	1593, 1709, 1828
AcuI	CTGAAG	2 cut(s)	1067, 1185
AcvI	CACGTG	1 cut(s)	1775
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	421, 713
AflIII	ACRYGT	2 cut(s)	899, 1131
AjiI	CACGTC	1 cut(s)	900
AjnI	CCWGG	1 cut(s)	1949
AjuI	GAANNNNNNNTTGG	4 cut(s)	552, 584, 761, 793
Alw21I	GWGCWC	3 cut(s)	102, 827, 1018
Alw26I	GTCTC	2 cut(s)	300, 854
AlwI	GGATC	2 cut(s)	897, 1100
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	4 cut(s)	803, 1255, 1376, 1729
ApoI	RAATTY	3 cut(s)	1593, 1709, 1828
AseI	ATTAAT	1 cut(s)	2037
Asp700I	GAANNNNTTC	1 cut(s)	776
AspA2I	CCTAGG	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	229, 446
AsuHPI	GGTGA	3 cut(s)	251, 620, 1648
AvaII	GGWCC	2 cut(s)	229, 446
AvrII	CCTAGG	1 cut(s)	683
BbrPI	CACGTG	1 cut(s)	1775
Bbv12I	GWGCWC	3 cut(s)	102, 827, 1018
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	790, 1267, 1363, 1741
BccI	CCATC	9 cut(s)	473, 598, 646, 859, 1225, 1652, 1810, 1915, 2041
BciT130I	CCWGG	1 cut(s)	1951
BcoDI	GTCTC	2 cut(s)	300, 854
BfaI	CTAG	2 cut(s)	510, 684
BfmI	CTRYAG	2 cut(s)	341, 1377
BisI	GCNGC	6 cut(s)	355, 521, 804, 1256, 1377, 1730
BlnI	CCTAGG	1 cut(s)	683
BlsI	GCNGC	6 cut(s)	356, 522, 805, 1257, 1378, 1731
Bme1390I	CCNGG	1 cut(s)	1951
Bme18I	GGWCC	2 cut(s)	229, 446
BmgBI	CACGTC	1 cut(s)	900
BmgT120I	GGNCC	2 cut(s)	229, 446
BmiI	GGNNCC	3 cut(s)	447, 666, 1308
BmrFI	CCNGG	1 cut(s)	1951
BmrI	ACTGGG	3 cut(s)	410, 452, 545
BmsI	GCATC	6 cut(s)	832, 940, 1225, 1372, 1543, 1936
BmuI	ACTGGG	3 cut(s)	410, 452, 545
Bpu10I	CCTNAGC	2 cut(s)	163, 1967
BpuEI	CTTGAG	1 cut(s)	1879
BsaAI	YACGTR	1 cut(s)	1775
BsaBI	GATNNNNATC	2 cut(s)	465, 917
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	683
BsaWI	WCCGGW	2 cut(s)	448, 886
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 713
Bse1I	ACTGG	4 cut(s)	416, 447, 540, 1995
Bse8I	GATNNNNATC	2 cut(s)	465, 917
BseAI	TCCGGA	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	1951
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	7 cut(s)	657, 790, 1240, 1401, 1558, 1875, 1987
BseJI	GATNNNNATC	2 cut(s)	465, 917
BseLI	CCNNNNNNNGG	2 cut(s)	421, 713
BseMII	CTCAG	6 cut(s)	147, 177, 1170, 1251, 1382, 1569
BseNI	ACTGG	4 cut(s)	416, 447, 540, 1995
BseRI	GAGGAG	4 cut(s)	21, 52, 129, 151
BseXI	GCAGC	4 cut(s)	790, 1267, 1363, 1741
Bsh1236I	CGCG	2 cut(s)	1133, 1881
BshFI	GGCC	1 cut(s)	816
BsiHKAI	GWGCWC	3 cut(s)	102, 827, 1018
BsiSI	CCGG	3 cut(s)	405, 449, 887
BslFI	GGGAC	3 cut(s)	971, 1401, 1642
BslI	CCNNNNNNNGG	2 cut(s)	421, 713
BsmAI	GTCTC	2 cut(s)	300, 854
BsmBI	CGTCTC	1 cut(s)	854
BsmFI	GGGAC	3 cut(s)	971, 1401, 1642
BsmI	GAATGC	2 cut(s)	1257, 1768
BsnI	GGCC	1 cut(s)	816
Bsp1286I	GDGCHC	3 cut(s)	102, 827, 1018
Bsp13I	TCCGGA	1 cut(s)	886
Bsp143I	GATC	3 cut(s)	889, 1092, 1863
BspACI	CCGC	6 cut(s)	38, 352, 355, 393, 520, 1879
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	6 cut(s)	146, 176, 1171, 1252, 1383, 1570
BspEI	TCCGGA	1 cut(s)	886
BspFNI	CGCG	2 cut(s)	1133, 1881
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	3 cut(s)	447, 666, 1308
BspMAI	CTGCAG	2 cut(s)	345, 1381
BspPI	GGATC	2 cut(s)	897, 1100
BspQI	GCTCTTC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	416, 447, 540, 1995
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	3 cut(s)	889, 1092, 1863
BssNAI	GTATAC	1 cut(s)	1434
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	683
Bst1107I	GTATAC	1 cut(s)	1434
Bst2UI	CCWGG	1 cut(s)	1951
Bst4CI	ACNGT	3 cut(s)	56, 1244, 1738
Bst6I	CTCTTC	5 cut(s)	219, 252, 364, 1043, 1656
BstACI	GRCGYC	1 cut(s)	408
BstAPI	GCANNNNNTGC	2 cut(s)	950, 2129
BstBAI	YACGTR	1 cut(s)	1775
BstC8I	GCNNGC	6 cut(s)	332, 397, 1469, 1566, 1570, 1883
BstDEI	CTNAG	9 cut(s)	113, 133, 163, 1179, 1260, 1391, 1578, 1632, 1967
BstF5I	GGATG	7 cut(s)	657, 790, 1240, 1401, 1558, 1875, 1987
BstFNI	CGCG	2 cut(s)	1133, 1881
BstKTI	GATC	3 cut(s)	892, 1095, 1866
BstMAI	GTCTC	2 cut(s)	300, 854
BstMBI	GATC	3 cut(s)	889, 1092, 1863
BstMWI	GCNNNNNNNGC	6 cut(s)	340, 405, 822, 950, 1382, 2129
BstNI	CCWGG	1 cut(s)	1951
BstNSI	RCATGY	1 cut(s)	1504
BstSCI	CCNGG	1 cut(s)	1949
BstSFI	CTRYAG	2 cut(s)	341, 1377
BstUI	CGCG	2 cut(s)	1133, 1881
BstV1I	GCAGC	4 cut(s)	790, 1267, 1363, 1741
BstX2I	RGATCY	1 cut(s)	1092
BstYI	RGATCY	1 cut(s)	1092
BstZ17I	GTATAC	1 cut(s)	1434
BsuRI	GGCC	1 cut(s)	816
BtrI	CACGTC	1 cut(s)	900
BtsCI	GGATG	7 cut(s)	657, 790, 1240, 1401, 1558, 1875, 1987
BtsI	GCAGTG	1 cut(s)	946
BtsIMutI	CAGTG	5 cut(s)	423, 533, 946, 1575, 1743
Cac8I	GCNNGC	6 cut(s)	332, 397, 1469, 1566, 1570, 1883
CciI	TCATGA	1 cut(s)	921
Cfr13I	GGNCC	2 cut(s)	229, 446
CseI	GACGC	1 cut(s)	397
CspCI	CAANNNNNGTGG	4 cut(s)	1680, 1715, 1788, 1823
CviAII	CATG	9 cut(s)	791, 820, 893, 922, 954, 1372, 1448, 1472, 1501
DdeI	CTNAG	9 cut(s)	113, 133, 163, 1179, 1260, 1391, 1578, 1632, 1967
DpnI	GATC	3 cut(s)	891, 1094, 1865
DpnII	GATC	3 cut(s)	889, 1092, 1863
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	5 cut(s)	219, 252, 364, 1043, 1656
EarI	CTCTTC	5 cut(s)	219, 252, 364, 1043, 1656
Eco130I	CCWWGG	1 cut(s)	683
Eco47I	GGWCC	2 cut(s)	229, 446
Eco57I	CTGAAG	2 cut(s)	1067, 1185
Eco72I	CACGTG	1 cut(s)	1775
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	1949
EcoT14I	CCWWGG	1 cut(s)	683
EcoT22I	ATGCAT	6 cut(s)	955, 1240, 1387, 1453, 1558, 1768
ErhI	CCWWGG	1 cut(s)	683
Esp3I	CGTCTC	1 cut(s)	854
FaeI	CATG	9 cut(s)	794, 823, 896, 925, 957, 1375, 1451, 1475, 1504
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	3 cut(s)	971, 1401, 1642
FatI	CATG	9 cut(s)	790, 819, 892, 921, 953, 1371, 1447, 1471, 1500
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	1768
FblI	GTMKAC	2 cut(s)	411, 1433
Fnu4HI	GCNGC	6 cut(s)	355, 521, 804, 1256, 1377, 1730
FokI	GGATG	7 cut(s)	664, 797, 1247, 1408, 1565, 1862, 1994
Fsp4HI	GCNGC	6 cut(s)	355, 521, 804, 1256, 1377, 1730
FspBI	CTAG	2 cut(s)	510, 684
GluI	GCNGC	6 cut(s)	355, 521, 804, 1256, 1377, 1730
HaeIII	GGCC	1 cut(s)	816
HapII	CCGG	3 cut(s)	405, 449, 887
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	9 cut(s)	794, 823, 896, 925, 957, 1375, 1451, 1475, 1504
HincII	GTYRAC	2 cut(s)	412, 2137
HindII	GTYRAC	2 cut(s)	412, 2137
HindIII	AAGCTT	3 cut(s)	1274, 1479, 1964
HinfI	GANTC	6 cut(s)	285, 401, 455, 461, 997, 1841
HpaI	GTTAAC	1 cut(s)	2137
HpaII	CCGG	3 cut(s)	405, 449, 887
HphI	GGTGA	3 cut(s)	251, 620, 1648
Hpy166II	GTNNAC	3 cut(s)	412, 1434, 2137
Hpy188I	TCNGA	8 cut(s)	284, 300, 460, 478, 1230, 1392, 1708, 1827
Hpy188III	TCNNGA	6 cut(s)	887, 922, 1001, 1655, 1685, 2092
Hpy8I	GTNNAC	3 cut(s)	412, 1434, 2137
Hpy99I	CGWCG	1 cut(s)	413
HpyCH4III	ACNGT	3 cut(s)	56, 1244, 1738
HpyCH4IV	ACGT	3 cut(s)	118, 899, 1774
HpyF10VI	GCNNNNNNNGC	6 cut(s)	340, 405, 822, 950, 1382, 2129
HpyF3I	CTNAG	9 cut(s)	113, 133, 163, 1179, 1260, 1391, 1578, 1632, 1967
HpySE526I	ACGT	3 cut(s)	118, 899, 1774
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	9 cut(s)	794, 823, 896, 925, 957, 1375, 1451, 1475, 1504
Kpn2I	TCCGGA	1 cut(s)	886
KspAI	GTTAAC	1 cut(s)	2137
Kzo9I	GATC	3 cut(s)	889, 1092, 1863
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	5 cut(s)	27, 142, 164, 664, 1306
Lsp1109I	GCAGC	4 cut(s)	790, 1267, 1363, 1741
LweI	GCATC	6 cut(s)	832, 940, 1225, 1372, 1543, 1936
MaeI	CTAG	2 cut(s)	510, 684
MaeII	ACGT	3 cut(s)	118, 899, 1774
MaeIII	GTNAC	6 cut(s)	56, 676, 895, 1367, 1636, 1846
MalI	GATC	3 cut(s)	891, 1094, 1865
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	3 cut(s)	889, 1092, 1863
MfeI	CAATTG	2 cut(s)	276, 991
MflI	RGATCY	1 cut(s)	1092
MhlI	GDGCHC	3 cut(s)	102, 827, 1018
MluI	ACGCGT	1 cut(s)	1131
MlyI	GAGTC	2 cut(s)	1006, 1835
MmeI	TCCRAC	1 cut(s)	469
Mph1103I	ATGCAT	6 cut(s)	955, 1240, 1387, 1453, 1558, 1768
MroI	TCCGGA	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	776
MslI	CAYNNNNRTG	2 cut(s)	1580, 1880
MspA1I	CMGCKG	1 cut(s)	1804
MspI	CCGG	3 cut(s)	405, 449, 887
MspR9I	CCNGG	1 cut(s)	1951
MunI	CAATTG	2 cut(s)	276, 991
Mva1269I	GAATGC	2 cut(s)	1257, 1768
MvaI	CCWGG	1 cut(s)	1951
MvnI	CGCG	2 cut(s)	1133, 1881
MwoI	GCNNNNNNNGC	6 cut(s)	340, 405, 822, 950, 1382, 2129
NdeI	CATATG	1 cut(s)	1768
NdeII	GATC	3 cut(s)	889, 1092, 1863
NlaIII	CATG	9 cut(s)	794, 823, 896, 925, 957, 1375, 1451, 1475, 1504
NlaIV	GGNNCC	3 cut(s)	447, 666, 1308
NmuCI	GTSAC	4 cut(s)	56, 895, 1367, 1636
NsiI	ATGCAT	6 cut(s)	955, 1240, 1387, 1453, 1558, 1768
NspI	RCATGY	1 cut(s)	1504
PagI	TCATGA	1 cut(s)	921
PciSI	GCTCTTC	1 cut(s)	364
PctI	GAATGC	2 cut(s)	1257, 1768
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	4 cut(s)	285, 401, 455, 461
PkrI	GCNGC	6 cut(s)	356, 522, 805, 1257, 1378, 1731
PleI	GAGTC	2 cut(s)	1005, 1835
PmaCI	CACGTG	1 cut(s)	1775
PmlI	CACGTG	1 cut(s)	1775
PpsI	GAGTC	2 cut(s)	1005, 1835
Ppu21I	YACGTR	1 cut(s)	1775
PpuMI	RGGWCCY	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	2037
PsiI	TTATAA	2 cut(s)	798, 1022
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	1949
PspCI	CACGTG	1 cut(s)	1775
PspGI	CCWGG	1 cut(s)	1949
PspN4I	GGNNCC	3 cut(s)	447, 666, 1308
PspPI	GGNCC	2 cut(s)	229, 446
PspPPI	RGGWCCY	1 cut(s)	229
PstI	CTGCAG	2 cut(s)	345, 1381
PsuI	RGATCY	1 cut(s)	1092
PvuII	CAGCTG	1 cut(s)	1804
RseI	CAYNNNNRTG	2 cut(s)	1580, 1880
SalI	GTCGAC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	364
SatI	GCNGC	6 cut(s)	355, 521, 804, 1256, 1377, 1730
Sau3AI	GATC	3 cut(s)	889, 1092, 1863
Sau96I	GGNCC	2 cut(s)	229, 446
SchI	GAGTC	2 cut(s)	1006, 1835
ScrFI	CCNGG	1 cut(s)	1951
SduI	GDGCHC	3 cut(s)	102, 827, 1018
SfaNI	GCATC	6 cut(s)	832, 940, 1225, 1372, 1543, 1936
SfcI	CTRYAG	2 cut(s)	341, 1377
SinI	GGWCC	2 cut(s)	229, 446
SmiMI	CAYNNNNRTG	2 cut(s)	1580, 1880
SmlI	CTYRAG	1 cut(s)	1894
SmoI	CTYRAG	1 cut(s)	1894
SsiI	CCGC	6 cut(s)	38, 352, 355, 393, 520, 1879
SspI	AATATT	1 cut(s)	1225
SspMI	CTAG	2 cut(s)	510, 684
StyD4I	CCNGG	1 cut(s)	1949
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	3 cut(s)	56, 1244, 1738
TaiI	ACGT	3 cut(s)	121, 902, 1777
TaqI	TCGA	1 cut(s)	411
TauI	GCSGC	2 cut(s)	357, 523
TfiI	GAWTC	4 cut(s)	285, 401, 455, 461
TscAI	CASTG	5 cut(s)	423, 540, 946, 1582, 1743
TseFI	GTSAC	4 cut(s)	56, 895, 1367, 1636
TseI	GCWGC	4 cut(s)	803, 1255, 1376, 1729
Tsp45I	GTSAC	4 cut(s)	56, 895, 1367, 1636
TspDTI	ATGAA	9 cut(s)	171, 261, 779, 852, 989, 1142, 1199, 1412, 1775
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	5 cut(s)	423, 540, 946, 1582, 1743
VpaK11BI	GGWCC	2 cut(s)	229, 446
VspI	ATTAAT	1 cut(s)	2037
XapI	RAATTY	3 cut(s)	1593, 1709, 1828
XceI	RCATGY	1 cut(s)	1504
XmaJI	CCTAGG	1 cut(s)	683
XmiI	GTMKAC	2 cut(s)	411, 1433
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	2 cut(s)	510, 684
Zsp2I	ATGCAT	6 cut(s)	955, 1240, 1387, 1453, 1558, 1768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.