Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

9068491 .. 9070948

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGGCTCTTCTACGCCAACAGCTCCGTCCTCCTCTCCCGCTTCCCTTAATTCACAGTCACTCTTCAACCCACCATTTCCCAAAACCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACGTTTCTCTCTCTACTCAGCTCCTCCTACTCCCACTTCCAGCTCCTCAGCCTCCATTTTCCTTCCATTTCTCCAAGACGAAGAAGAAGCAGGGGAGGACCATGAAGTTGAAGATGAAGCTGAAGAAGAAGAAGAGGACCCAGATGACCCAATTGTCAGATTCTTCAAGTCTCGGACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTCTCTCTGCAGAAGAACCGCCGCTCTTCTTGGCACTTAGCTGACGATTTAGACGATTCCGAAACCGATTCCGGCGTCGACCCAGTGCTGGAAGTACAAAAACAACAACTGGGTCCGGTGGATTCCGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCGGCAGAATATGACACTGGGAGAGGAATTGGGAGGTTTTGAAGGGAAGGTTGGAGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAGGGATTGTTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAAAAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCGAATGCTATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCGAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCTCATCTCCCACCTTTAATATTCTGATGGATGCATACTGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATATGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGAAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCAGTGGCTGGCATGAGAAAGCTTACATCGCATTTGAGAACATGCAAAGGGAAGGATTAAAGCCCTCCATAGAAACATATACTGCTTTACTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATCAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCTAAGCAAGGTCACTATCTTGAAGCAAGAGATGTTGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATAAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTAAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCGAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTCGCGAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAGGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCTGATAATGCAGTTAACAATACCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

714

Amino Acids

80.94

Weight (kDa)

7.88

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	258 - 303	1.6e-10	PPR repeat family
PPR_long	PF17177	272 - 409	8.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	319 - 378	9.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	336 - 378	4.8e-07	PPR repeat family
PPR_3	PF13812	356 - 412	9.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	360 - 393	1.3e-08	PPR repeat
PPR_2	PF13041	365 - 413	5.1e-18	PPR repeat family
PPR	PF01535	368 - 397	8.9e-09	PPR repeat
PPR_long	PF17177	388 - 492	1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	399 - 446	5.6e-11	PPR repeat family
PPR_3	PF13812	422 - 482	3.7e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	425 - 548	4.1e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	435 - 482	2.1e-08	PPR repeat family
PPR_2	PF13041	474 - 517	7e-09	PPR repeat family
PPR_3	PF13812	495 - 550	2.5e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	505 - 554	2e-08	PPR repeat family
PPR_2	PF13041	543 - 589	1.4e-09	PPR repeat family
PPR_3	PF13812	543 - 587	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	575 - 622	2.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	789, 1013
AasI	GACNNNNNNGTC	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	348
AccI	GTMKAC	2 cut(s)	402, 1424
AccII	CGCG	3 cut(s)	1124, 1872, 1985
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	5 cut(s)	38, 343, 346, 511, 1870
AclWI	GGATC	2 cut(s)	888, 1091
AcsI	RAATTY	2 cut(s)	1584, 1700
AcuI	CTGAAG	3 cut(s)	258, 1058, 1176
AcvI	CACGTG	1 cut(s)	1766
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	412, 704
AflIII	ACRYGT	3 cut(s)	890, 1122, 1319
AjiI	CACGTC	1 cut(s)	891
AjuI	GAANNNNNNNTTGG	4 cut(s)	543, 575, 752, 784
Alw21I	GWGCWC	3 cut(s)	102, 818, 1009
Alw26I	GTCTC	2 cut(s)	291, 845
AlwI	GGATC	2 cut(s)	888, 1091
AlwNI	CAGNNNCTG	1 cut(s)	1458
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	1 cut(s)	805
ApeKI	GCWGC	4 cut(s)	794, 1246, 1367, 1720
ApoI	RAATTY	2 cut(s)	1584, 1700
AseI	ATTAAT	1 cut(s)	2028
Asp700I	GAANNNNTTC	1 cut(s)	767
AspA2I	CCTAGG	1 cut(s)	674
AspS9I	GGNCC	3 cut(s)	214, 253, 437
AsuHPI	GGTGA	2 cut(s)	611, 1639
AsuII	TTCGAA	1 cut(s)	1136
AvaII	GGWCC	3 cut(s)	214, 253, 437
AvrII	CCTAGG	1 cut(s)	674
BbrPI	CACGTG	1 cut(s)	1766
Bbv12I	GWGCWC	3 cut(s)	102, 818, 1009
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	781, 1258, 1354, 1732
BccI	CCATC	9 cut(s)	464, 589, 637, 850, 1216, 1643, 1801, 1906, 2032
BclI	TGATCA	1 cut(s)	1599
BcoDI	GTCTC	2 cut(s)	291, 845
BfaI	CTAG	2 cut(s)	501, 675
BfmI	CTRYAG	3 cut(s)	332, 1234, 1368
BisI	GCNGC	6 cut(s)	346, 512, 795, 1247, 1368, 1721
BlnI	CCTAGG	1 cut(s)	674
BlpI	GCTNAGC	1 cut(s)	1659
BlsI	GCNGC	6 cut(s)	347, 513, 796, 1248, 1369, 1722
Bme18I	GGWCC	3 cut(s)	214, 253, 437
BmgBI	CACGTC	1 cut(s)	891
BmgT120I	GGNCC	3 cut(s)	214, 253, 437
BmiI	GGNNCC	4 cut(s)	255, 438, 657, 1299
BmrI	ACTGGG	3 cut(s)	401, 443, 536
BmsI	GCATC	6 cut(s)	823, 931, 1216, 1363, 1534, 1927
BmuI	ACTGGG	3 cut(s)	401, 443, 536
Bpu10I	CCTNAGC	2 cut(s)	163, 1958
Bpu1102I	GCTNAGC	1 cut(s)	1659
Bpu14I	TTCGAA	1 cut(s)	1136
BpuEI	CTTGAG	1 cut(s)	1870
BsaAI	YACGTR	1 cut(s)	1766
BsaBI	GATNNNNATC	2 cut(s)	456, 908
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	2 cut(s)	439, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 704
Bse1I	ACTGG	4 cut(s)	407, 438, 531, 1545
Bse8I	GATNNNNATC	2 cut(s)	456, 908
BseAI	TCCGGA	1 cut(s)	877
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	8 cut(s)	648, 781, 1231, 1392, 1549, 1866, 1978, 2080
BseJI	GATNNNNATC	2 cut(s)	456, 908
BseLI	CCNNNNNNNGG	2 cut(s)	412, 704
BseMII	CTCAG	6 cut(s)	147, 177, 1161, 1242, 1373, 1560
BseNI	ACTGG	4 cut(s)	407, 438, 531, 1545
BseRI	GAGGAG	4 cut(s)	21, 129, 151, 617
BseXI	GCAGC	4 cut(s)	781, 1258, 1354, 1732
Bsh1236I	CGCG	3 cut(s)	1124, 1872, 1985
BshFI	GGCC	1 cut(s)	807
BsiHKAI	GWGCWC	3 cut(s)	102, 818, 1009
BsiSI	CCGG	3 cut(s)	396, 440, 878
BslFI	GGGAC	3 cut(s)	962, 1392, 1633
BslI	CCNNNNNNNGG	2 cut(s)	412, 704
BsmAI	GTCTC	2 cut(s)	291, 845
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	3 cut(s)	962, 1392, 1633
BsmI	GAATGC	2 cut(s)	1099, 1248
BsnI	GGCC	1 cut(s)	807
Bsp119I	TTCGAA	1 cut(s)	1136
Bsp1286I	GDGCHC	3 cut(s)	102, 818, 1009
Bsp13I	TCCGGA	1 cut(s)	877
Bsp143I	GATC	4 cut(s)	880, 1083, 1599, 1854
Bsp1720I	GCTNAGC	1 cut(s)	1659
Bsp68I	TCGCGA	1 cut(s)	1985
BspACI	CCGC	5 cut(s)	38, 343, 346, 511, 1870
BspANI	GGCC	1 cut(s)	807
BspCNI	CTCAG	6 cut(s)	146, 176, 1162, 1243, 1374, 1561
BspEI	TCCGGA	1 cut(s)	877
BspFNI	CGCG	3 cut(s)	1124, 1872, 1985
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	4 cut(s)	255, 438, 657, 1299
BspMAI	CTGCAG	2 cut(s)	336, 1372
BspPI	GGATC	2 cut(s)	888, 1091
BspQI	GCTCTTC	2 cut(s)	12, 355
BspT104I	TTCGAA	1 cut(s)	1136
BsrBI	CCGCTC	1 cut(s)	348
BsrI	ACTGG	4 cut(s)	407, 438, 531, 1545
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	4 cut(s)	880, 1083, 1599, 1854
BssNAI	GTATAC	1 cut(s)	1425
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	674
Bst1107I	GTATAC	1 cut(s)	1425
Bst4CI	ACNGT	3 cut(s)	56, 1235, 1729
Bst6I	CTCTTC	6 cut(s)	12, 67, 243, 355, 1034, 1647
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstBAI	YACGTR	1 cut(s)	1766
BstBI	TTCGAA	1 cut(s)	1136
BstC8I	GCNNGC	5 cut(s)	323, 1460, 1557, 1561, 1874
BstF5I	GGATG	8 cut(s)	648, 781, 1231, 1392, 1549, 1866, 1978, 2080
BstFNI	CGCG	3 cut(s)	1124, 1872, 1985
BstKTI	GATC	4 cut(s)	883, 1086, 1602, 1857
BstMAI	GTCTC	2 cut(s)	291, 845
BstMBI	GATC	4 cut(s)	880, 1083, 1599, 1854
BstMWI	GCNNNNNNNGC	6 cut(s)	331, 813, 941, 1373, 1478, 2120
BstNSI	RCATGY	2 cut(s)	1323, 1495
BstSFI	CTRYAG	3 cut(s)	332, 1234, 1368
BstUI	CGCG	3 cut(s)	1124, 1872, 1985
BstV1I	GCAGC	4 cut(s)	781, 1258, 1354, 1732
BstX2I	RGATCY	1 cut(s)	1083
BstYI	RGATCY	1 cut(s)	1083
BstZ17I	GTATAC	1 cut(s)	1425
BsuRI	GGCC	1 cut(s)	807
BtgZI	GCGATG	1 cut(s)	1462
BtrI	CACGTC	1 cut(s)	891
BtsCI	GGATG	8 cut(s)	648, 781, 1231, 1392, 1549, 1866, 1978, 2080
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	6 cut(s)	414, 524, 937, 1459, 1566, 1734
BtuMI	TCGCGA	1 cut(s)	1985
Cac8I	GCNNGC	5 cut(s)	323, 1460, 1557, 1561, 1874
CaiI	CAGNNNCTG	1 cut(s)	1458
CciI	TCATGA	1 cut(s)	912
Cfr13I	GGNCC	3 cut(s)	214, 253, 437
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	419
CspCI	CAANNNNNGTGG	2 cut(s)	1779, 1814
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	4 cut(s)	882, 1085, 1601, 1856
DpnII	GATC	4 cut(s)	880, 1083, 1599, 1854
DraI	TTTAAA	1 cut(s)	1824
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	6 cut(s)	12, 67, 243, 355, 1034, 1647
EarI	CTCTTC	6 cut(s)	12, 67, 243, 355, 1034, 1647
Eco130I	CCWWGG	1 cut(s)	674
Eco47I	GGWCC	3 cut(s)	214, 253, 437
Eco57I	CTGAAG	3 cut(s)	258, 1058, 1176
Eco72I	CACGTG	1 cut(s)	1766
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	674
EcoT22I	ATGCAT	6 cut(s)	946, 1231, 1378, 1444, 1549, 1759
ErhI	CCWWGG	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	845
FaqI	GGGAC	3 cut(s)	962, 1392, 1633
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	1759
FbaI	TGATCA	1 cut(s)	1599
FblI	GTMKAC	2 cut(s)	402, 1424
Fnu4HI	GCNGC	6 cut(s)	346, 512, 795, 1247, 1368, 1721
FokI	GGATG	8 cut(s)	655, 788, 1238, 1399, 1556, 1853, 1985, 2087
Fsp4HI	GCNGC	6 cut(s)	346, 512, 795, 1247, 1368, 1721
FspBI	CTAG	2 cut(s)	501, 675
GluI	GCNGC	6 cut(s)	346, 512, 795, 1247, 1368, 1721
HaeIII	GGCC	1 cut(s)	807
HapII	CCGG	3 cut(s)	396, 440, 878
HgaI	GACGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	399
HincII	GTYRAC	2 cut(s)	403, 2128
HindII	GTYRAC	2 cut(s)	403, 2128
HindIII	AAGCTT	3 cut(s)	1265, 1470, 1955
HinfI	GANTC	7 cut(s)	276, 380, 392, 446, 452, 988, 1832
HpaI	GTTAAC	1 cut(s)	2128
HpaII	CCGG	3 cut(s)	396, 440, 878
HphI	GGTGA	2 cut(s)	611, 1639
Hpy166II	GTNNAC	3 cut(s)	403, 1425, 2128
Hpy188I	TCNGA	8 cut(s)	275, 291, 385, 451, 469, 1221, 1383, 1699
Hpy188III	TCNNGA	8 cut(s)	878, 913, 992, 1646, 1676, 1887, 1984, 2083
Hpy8I	GTNNAC	3 cut(s)	403, 1425, 2128
Hpy99I	CGWCG	1 cut(s)	404
HpyCH4III	ACNGT	3 cut(s)	56, 1235, 1729
HpyCH4IV	ACGT	3 cut(s)	118, 890, 1765
HpyF10VI	GCNNNNNNNGC	6 cut(s)	331, 813, 941, 1373, 1478, 2120
HpySE526I	ACGT	3 cut(s)	118, 890, 1765
Hsp92I	GRCGYC	1 cut(s)	399
Kpn2I	TCCGGA	1 cut(s)	877
Ksp22I	TGATCA	1 cut(s)	1599
KspAI	GTTAAC	1 cut(s)	2128
Kzo9I	GATC	4 cut(s)	880, 1083, 1599, 1854
LguI	GCTCTTC	2 cut(s)	12, 355
LmnI	GCTCC	5 cut(s)	27, 142, 164, 655, 1297
Lsp1109I	GCAGC	4 cut(s)	781, 1258, 1354, 1732
LweI	GCATC	6 cut(s)	823, 931, 1216, 1363, 1534, 1927
MaeI	CTAG	2 cut(s)	501, 675
MaeII	ACGT	3 cut(s)	118, 890, 1765
MaeIII	GTNAC	7 cut(s)	56, 667, 886, 1358, 1627, 1667, 1837
MalI	GATC	4 cut(s)	882, 1085, 1601, 1856
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	4 cut(s)	880, 1083, 1599, 1854
MfeI	CAATTG	2 cut(s)	267, 982
MflI	RGATCY	1 cut(s)	1083
MhlI	GDGCHC	3 cut(s)	102, 818, 1009
MluI	ACGCGT	1 cut(s)	1122
MlyI	GAGTC	2 cut(s)	997, 1826
MmeI	TCCRAC	2 cut(s)	460, 541
Mph1103I	ATGCAT	6 cut(s)	946, 1231, 1378, 1444, 1549, 1759
MroI	TCCGGA	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	767
MslI	CAYNNNNRTG	2 cut(s)	1571, 1871
MspA1I	CMGCKG	1 cut(s)	1795
MspI	CCGG	3 cut(s)	396, 440, 878
MunI	CAATTG	2 cut(s)	267, 982
Mva1269I	GAATGC	2 cut(s)	1099, 1248
MvnI	CGCG	3 cut(s)	1124, 1872, 1985
MwoI	GCNNNNNNNGC	6 cut(s)	331, 813, 941, 1373, 1478, 2120
NdeI	CATATG	1 cut(s)	1759
NdeII	GATC	4 cut(s)	880, 1083, 1599, 1854
NlaIV	GGNNCC	4 cut(s)	255, 438, 657, 1299
NmuCI	GTSAC	5 cut(s)	56, 886, 1358, 1627, 1667
NruI	TCGCGA	1 cut(s)	1985
NsiI	ATGCAT	6 cut(s)	946, 1231, 1378, 1444, 1549, 1759
NspI	RCATGY	2 cut(s)	1323, 1495
NspV	TTCGAA	1 cut(s)	1136
PagI	TCATGA	1 cut(s)	912
PciI	ACATGT	1 cut(s)	1319
PciSI	GCTCTTC	2 cut(s)	12, 355
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	2 cut(s)	1099, 1248
PdmI	GAANNNNTTC	1 cut(s)	767
PfeI	GAWTC	5 cut(s)	276, 380, 392, 446, 452
PkrI	GCNGC	6 cut(s)	347, 513, 796, 1248, 1369, 1722
PleI	GAGTC	2 cut(s)	996, 1826
PmaCI	CACGTG	1 cut(s)	1766
PmlI	CACGTG	1 cut(s)	1766
PpsI	GAGTC	2 cut(s)	996, 1826
Ppu21I	YACGTR	1 cut(s)	1766
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	1 cut(s)	1319
PshBI	ATTAAT	1 cut(s)	2028
PsiI	TTATAA	2 cut(s)	789, 1013
Psp5II	RGGWCCY	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	1766
PspN4I	GGNNCC	4 cut(s)	255, 438, 657, 1299
PspPI	GGNCC	3 cut(s)	214, 253, 437
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	2 cut(s)	336, 1372
PstNI	CAGNNNCTG	1 cut(s)	1458
PsuI	RGATCY	1 cut(s)	1083
PvuII	CAGCTG	1 cut(s)	1795
RruI	TCGCGA	1 cut(s)	1985
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	1571, 1871
SalI	GTCGAC	1 cut(s)	401
SapI	GCTCTTC	2 cut(s)	12, 355
SatI	GCNGC	6 cut(s)	346, 512, 795, 1247, 1368, 1721
Sau3AI	GATC	4 cut(s)	880, 1083, 1599, 1854
Sau96I	GGNCC	3 cut(s)	214, 253, 437
SchI	GAGTC	2 cut(s)	997, 1826
SduI	GDGCHC	3 cut(s)	102, 818, 1009
SfaNI	GCATC	6 cut(s)	823, 931, 1216, 1363, 1534, 1927
SfcI	CTRYAG	3 cut(s)	332, 1234, 1368
SfuI	TTCGAA	1 cut(s)	1136
SinI	GGWCC	3 cut(s)	214, 253, 437
SmiMI	CAYNNNNRTG	2 cut(s)	1571, 1871
SmlI	CTYRAG	1 cut(s)	1885
SmoI	CTYRAG	1 cut(s)	1885
SsiI	CCGC	5 cut(s)	38, 343, 346, 511, 1870
SspI	AATATT	1 cut(s)	1216
SspMI	CTAG	2 cut(s)	501, 675
StyI	CCWWGG	1 cut(s)	674
TaaI	ACNGT	3 cut(s)	56, 1235, 1729
TaiI	ACGT	3 cut(s)	121, 893, 1768
TaqI	TCGA	4 cut(s)	402, 896, 1091, 1136
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	2 cut(s)	348, 514
TfiI	GAWTC	5 cut(s)	276, 380, 392, 446, 452
TscAI	CASTG	6 cut(s)	414, 531, 937, 1459, 1573, 1734
TseFI	GTSAC	5 cut(s)	56, 886, 1358, 1627, 1667
TseI	GCWGC	4 cut(s)	794, 1246, 1367, 1720
Tsp45I	GTSAC	5 cut(s)	56, 886, 1358, 1627, 1667
TspDTI	ATGAA	8 cut(s)	234, 246, 770, 843, 980, 1133, 1190, 1403
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	6 cut(s)	414, 531, 937, 1459, 1573, 1734
VpaK11BI	GGWCC	3 cut(s)	214, 253, 437
VspI	ATTAAT	1 cut(s)	2028
XapI	RAATTY	2 cut(s)	1584, 1700
XceI	RCATGY	2 cut(s)	1323, 1495
XmaJI	CCTAGG	1 cut(s)	674
XmiI	GTMKAC	2 cut(s)	402, 1424
XmnI	GAANNNNTTC	1 cut(s)	767
XspI	CTAG	2 cut(s)	501, 675
Zsp2I	ATGCAT	6 cut(s)	946, 1231, 1378, 1444, 1549, 1759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.