Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

18288370 .. 18305268

Gene Structure 16899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAAGAAAAGTATGATGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCTGATCATGTGATGTGTTCGATAATGATTACTATCATGAGGAAATTTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATAAACAGGAAAGGTGTCAAATGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCATTTTGTGATGAGGAGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

94

Amino Acids

11.01

Weight (kDa)

6.58

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	146, 248, 254
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	32
BmsI	GCATC	2 cut(s)	10, 118
BsaBI	GATNNNNATC	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	95
BseJI	GATNNNNATC	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	67, 270
BspHI	TCATGA	1 cut(s)	99
BspPI	GGATC	1 cut(s)	278
BssMI	GATC	2 cut(s)	67, 270
Bst6I	CTCTTC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	70, 273
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	67, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	99
CviAII	CATG	3 cut(s)	71, 100, 132
CviJI	RGCY	2 cut(s)	223, 236
CviKI_1	RGCY	2 cut(s)	223, 236
DpnI	GATC	2 cut(s)	69, 272
DpnII	GATC	2 cut(s)	67, 270
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	74, 103, 135
FaiI	YATR	7 cut(s)	15, 34, 36, 72, 101, 133, 200
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	70, 99, 131
FbaI	TGATCA	1 cut(s)	67
Hin1II	CATG	3 cut(s)	74, 103, 135
HinfI	GANTC	1 cut(s)	175
Hpy188III	TCNNGA	4 cut(s)	65, 100, 179, 279
HpyAV	CCTTC	2 cut(s)	22, 71
HpyCH4V	TGCA	2 cut(s)	122, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	74, 103, 135
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 270
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	3 cut(s)	78, 142, 164
LweI	GCATC	2 cut(s)	10, 118
MalI	GATC	2 cut(s)	69, 272
MboI	GATC	2 cut(s)	67, 270
MboII	GAAGA	2 cut(s)	238, 274
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	107, 249
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	2 cut(s)	96, 211
Mph1103I	ATGCAT	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	67, 270
NlaIII	CATG	3 cut(s)	74, 103, 135
NsiI	ATGCAT	1 cut(s)	133
PagI	TCATGA	1 cut(s)	99
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	67, 270
SchI	GAGTC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	3 cut(s)	33, 166, 225
SfaNI	GCATC	2 cut(s)	10, 118
SgeI	CNNG	7 cut(s)	36, 77, 83, 112, 144, 169, 191
Sse9I	AATT	2 cut(s)	107, 249
TaqI	TCGA	2 cut(s)	83, 278
TasI	AATT	2 cut(s)	107, 249
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.