Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Forward (+)

59345770 .. 59349010

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGCTCTTCTACGCCAACAGCTCCGCCCTCCTCTCCCGCTCCCCTTAATTCACAGTCACTCTTCAACCCACCATTTCCCAAAACCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACATTTCTCTCTCTACTCAGCTCCTCCTACTCCCACTTCCAGCTCCTCAGCGTCCATTTTCCTTCCATTTCTCCAAGACGAAGAAGAAGCAGAAGAAGAAGAGGACCATGAAGTTGAAGTTGAAGATGAAGCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGACCCAGATGACCCAATTGTCAGATTCTTCAAGTCTCGCACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTCTCTCTGCAGAAGAACCGCCGCTCTTCTTGGCACTTAGCTGACGATTTAGACGATTCCGAAACCGATTCCGGCGTCGACCCAGTGCTGGAAGTACAAAAACAACAACTGGGTCCCGTGGATTCTGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCGGCAGAATATGACACTGGGAGAGGAATTGGGAGGTTTTGAAGGGAAGGTTGGAGAGAAGGAGTGTGTGGAAGTTTTGGAGTTGATGGGTGAGGAGGGACTGTTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAACAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGACGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCGAACTCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATATGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCAGTGGGTGGCATGAGAAAGCTTACATCGCGTTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATCAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTATTGAAAGAGATGGAGGTTCTCAATTTAAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTTGCAAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGATTTCTCCTCCAACACCACCTCTTTGCTTAGGTTGGCTGATAAATCCCGACGTACCTCGTCAGAATCTTAATGAGGATAAAATGAGCAACGTAAACCCTGTGGCTGGTAATCTGGAATACCAACCAGACACCACCATTCCAAAACTAGGAAATGCTTGGGAATTCATCTCTGTCTGCTTGTTCAAGGAGACTTTCCTGCGCATTTATATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

788

Amino Acids

89.56

Weight (kDa)

5.63

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	271 - 316	1.2e-10	PPR repeat family
PPR_long	PF17177	292 - 422	8.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	363 - 528	5.8e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	369 - 425	3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	373 - 406	2e-08	PPR repeat
PPR_2	PF13041	378 - 425	7.8e-17	PPR repeat family
PPR	PF01535	381 - 410	1e-08	PPR repeat
PPR_2	PF13041	416 - 459	4.7e-09	PPR repeat family
PPR_3	PF13812	435 - 495	4.2e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	437 - 561	3.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	447 - 495	3.3e-09	PPR repeat family
TPR_24	PF23276	463 - 531	6.8e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	486 - 530	3.4e-09	PPR repeat family
PPR_3	PF13812	508 - 563	2.8e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	518 - 567	2.3e-08	PPR repeat family
PPR_2	PF13041	556 - 602	3.9e-09	PPR repeat family
PPR_3	PF13812	556 - 600	2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	588 - 635	6.8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	828, 1052
AasI	GACNNNNNNGTC	1 cut(s)	308
Acc16I	TGCGCA	1 cut(s)	2348
AccBSI	CCGCTC	2 cut(s)	40, 387
AccI	GTMKAC	2 cut(s)	441, 1463
AccII	CGCG	3 cut(s)	1163, 1520, 1911
AccIII	TCCGGA	1 cut(s)	916
AciI	CCGC	6 cut(s)	25, 38, 382, 385, 550, 1909
AclWI	GGATC	2 cut(s)	927, 1130
AcsI	RAATTY	3 cut(s)	1623, 1739, 2309
AcuI	CTGAAG	2 cut(s)	270, 1215
AcvI	CACGTG	1 cut(s)	1805
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	2 cut(s)	459, 2202
AfiI	CCNNNNNNNGG	4 cut(s)	451, 743, 2252, 2294
AflIII	ACRYGT	3 cut(s)	929, 1161, 1358
AjiI	CACGTC	1 cut(s)	930
AjnI	CCWGG	1 cut(s)	1979
AjuI	GAANNNNNNNTTGG	4 cut(s)	582, 614, 791, 823
Alw21I	GWGCWC	3 cut(s)	102, 857, 1048
Alw26I	GTCTC	3 cut(s)	330, 884, 2330
AlwI	GGATC	2 cut(s)	927, 1130
Aor13HI	TCCGGA	1 cut(s)	916
AoxI	GGCC	1 cut(s)	844
ApeKI	GCWGC	4 cut(s)	833, 1285, 1406, 1759
ApoI	RAATTY	3 cut(s)	1623, 1739, 2309
AseI	ATTAAT	1 cut(s)	2067
Asp700I	GAANNNNTTC	1 cut(s)	806
AspA2I	CCTAGG	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	2349
AspS9I	GGNCC	3 cut(s)	220, 292, 476
AsuHPI	GGTGA	2 cut(s)	650, 1678
AvaII	GGWCC	3 cut(s)	220, 292, 476
AvrII	CCTAGG	1 cut(s)	713
BbrPI	CACGTG	1 cut(s)	1805
Bbv12I	GWGCWC	3 cut(s)	102, 857, 1048
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	820, 1297, 1393, 1771
BccI	CCATC	9 cut(s)	503, 628, 676, 889, 1255, 1682, 1840, 1945, 2071
BciT130I	CCWGG	1 cut(s)	1981
BclI	TGATCA	1 cut(s)	1638
BcoDI	GTCTC	3 cut(s)	330, 884, 2330
BfaI	CTAG	3 cut(s)	540, 714, 2294
BfmI	CTRYAG	2 cut(s)	371, 1407
BisI	GCNGC	6 cut(s)	385, 551, 834, 1286, 1407, 1760
BlnI	CCTAGG	1 cut(s)	713
BlsI	GCNGC	6 cut(s)	386, 552, 835, 1287, 1408, 1761
Bme1390I	CCNGG	1 cut(s)	1981
Bme18I	GGWCC	3 cut(s)	220, 292, 476
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	3 cut(s)	220, 292, 476
BmiI	GGNNCC	5 cut(s)	294, 477, 478, 696, 1338
BmrFI	CCNGG	1 cut(s)	1981
BmrI	ACTGGG	3 cut(s)	440, 482, 575
BmsI	GCATC	6 cut(s)	862, 970, 1255, 1402, 1573, 1966
BmuI	ACTGGG	3 cut(s)	440, 482, 575
Bpu10I	CCTNAGC	3 cut(s)	163, 1997, 2176
BpuEI	CTTGAG	1 cut(s)	1909
BsaAI	YACGTR	1 cut(s)	1805
BsaBI	GATNNNNATC	2 cut(s)	495, 947
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	480, 713
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	4 cut(s)	451, 743, 2252, 2294
Bse1I	ACTGG	3 cut(s)	446, 477, 570
Bse8I	GATNNNNATC	2 cut(s)	495, 947
BseAI	TCCGGA	1 cut(s)	916
BseBI	CCWGG	1 cut(s)	1981
BseDI	CCNNGG	2 cut(s)	480, 713
BseGI	GGATG	7 cut(s)	687, 820, 1270, 1431, 1588, 1905, 2017
BseJI	GATNNNNATC	2 cut(s)	495, 947
BseLI	CCNNNNNNNGG	4 cut(s)	451, 743, 2252, 2294
BseMII	CTCAG	6 cut(s)	147, 177, 1200, 1281, 1412, 1599
BseNI	ACTGG	3 cut(s)	446, 477, 570
BseRI	GAGGAG	5 cut(s)	21, 129, 151, 656, 2145
BseXI	GCAGC	4 cut(s)	820, 1297, 1393, 1771
Bsh1236I	CGCG	3 cut(s)	1163, 1520, 1911
BshFI	GGCC	1 cut(s)	846
BsiHKAI	GWGCWC	3 cut(s)	102, 857, 1048
BsiSI	CCGG	2 cut(s)	435, 917
BslFI	GGGAC	5 cut(s)	462, 660, 1001, 1431, 1672
BslI	CCNNNNNNNGG	4 cut(s)	451, 743, 2252, 2294
BsmAI	GTCTC	3 cut(s)	330, 884, 2330
BsmBI	CGTCTC	1 cut(s)	884
BsmFI	GGGAC	5 cut(s)	462, 660, 1001, 1431, 1672
BsmI	GAATGC	2 cut(s)	1287, 1798
BsnI	GGCC	1 cut(s)	846
Bsp1286I	GDGCHC	3 cut(s)	102, 857, 1048
Bsp13I	TCCGGA	1 cut(s)	916
Bsp143I	GATC	4 cut(s)	919, 1122, 1638, 1893
BspACI	CCGC	6 cut(s)	25, 38, 382, 385, 550, 1909
BspANI	GGCC	1 cut(s)	846
BspCNI	CTCAG	6 cut(s)	146, 176, 1201, 1282, 1413, 1600
BspEI	TCCGGA	1 cut(s)	916
BspFNI	CGCG	3 cut(s)	1163, 1520, 1911
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	5 cut(s)	294, 477, 478, 696, 1338
BspMAI	CTGCAG	2 cut(s)	375, 1411
BspPI	GGATC	2 cut(s)	927, 1130
BspQI	GCTCTTC	2 cut(s)	12, 394
BsrBI	CCGCTC	2 cut(s)	40, 387
BsrI	ACTGG	3 cut(s)	446, 477, 570
BssECI	CCNNGG	2 cut(s)	480, 713
BssMI	GATC	4 cut(s)	919, 1122, 1638, 1893
BssNAI	GTATAC	1 cut(s)	1464
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	713
Bst1107I	GTATAC	1 cut(s)	1464
Bst2UI	CCWGG	1 cut(s)	1981
Bst4CI	ACNGT	4 cut(s)	56, 651, 1274, 1768
Bst6I	CTCTTC	6 cut(s)	12, 67, 210, 282, 394, 1686
BstACI	GRCGYC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBAI	YACGTR	1 cut(s)	1805
BstC8I	GCNNGC	4 cut(s)	362, 1596, 1600, 1913
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	7 cut(s)	687, 820, 1270, 1431, 1588, 1905, 2017
BstFNI	CGCG	3 cut(s)	1163, 1520, 1911
BstHHI	GCGC	1 cut(s)	2349
BstKTI	GATC	4 cut(s)	922, 1125, 1641, 1896
BstMAI	GTCTC	3 cut(s)	330, 884, 2330
BstMBI	GATC	4 cut(s)	919, 1122, 1638, 1893
BstMWI	GCNNNNNNNGC	5 cut(s)	370, 852, 980, 1412, 1517
BstNI	CCWGG	1 cut(s)	1981
BstNSI	RCATGY	2 cut(s)	1362, 1534
BstSCI	CCNGG	1 cut(s)	1979
BstSFI	CTRYAG	2 cut(s)	371, 1407
BstUI	CGCG	3 cut(s)	1163, 1520, 1911
BstV1I	GCAGC	4 cut(s)	820, 1297, 1393, 1771
BstX2I	RGATCY	1 cut(s)	1122
BstYI	RGATCY	1 cut(s)	1122
BstZ17I	GTATAC	1 cut(s)	1464
BsuRI	GGCC	1 cut(s)	846
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	1501
BtrI	CACGTC	1 cut(s)	930
BtsCI	GGATG	7 cut(s)	687, 820, 1270, 1431, 1588, 1905, 2017
BtsI	GCAGTG	1 cut(s)	976
BtsIMutI	CAGTG	6 cut(s)	453, 563, 976, 1498, 1605, 1773
Cac8I	GCNNGC	4 cut(s)	362, 1596, 1600, 1913
CciI	TCATGA	1 cut(s)	951
CfoI	GCGC	1 cut(s)	2349
Cfr13I	GGNCC	3 cut(s)	220, 292, 476
CseI	GACGC	2 cut(s)	156, 427
Csp6I	GTAC	2 cut(s)	458, 2201
CspCI	CAANNNNNGTGG	4 cut(s)	1710, 1745, 1818, 1853
CviQI	GTAC	2 cut(s)	458, 2201
DpnI	GATC	4 cut(s)	921, 1124, 1640, 1895
DpnII	GATC	4 cut(s)	919, 1122, 1638, 1893
DraI	TTTAAA	1 cut(s)	1863
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	6 cut(s)	12, 67, 210, 282, 394, 1686
EarI	CTCTTC	6 cut(s)	12, 67, 210, 282, 394, 1686
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	713
Eco47I	GGWCC	3 cut(s)	220, 292, 476
Eco57I	CTGAAG	2 cut(s)	270, 1215
Eco72I	CACGTG	1 cut(s)	1805
EcoO109I	RGGNCCY	2 cut(s)	292, 476
EcoRI	GAATTC	1 cut(s)	2309
EcoRII	CCWGG	1 cut(s)	1979
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	6 cut(s)	985, 1270, 1417, 1483, 1588, 1798
ErhI	CCWWGG	1 cut(s)	713
Esp3I	CGTCTC	1 cut(s)	884
FaqI	GGGAC	5 cut(s)	462, 660, 1001, 1431, 1672
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	1798
FbaI	TGATCA	1 cut(s)	1638
FblI	GTMKAC	2 cut(s)	441, 1463
Fnu4HI	GCNGC	6 cut(s)	385, 551, 834, 1286, 1407, 1760
FokI	GGATG	7 cut(s)	694, 827, 1277, 1438, 1595, 1892, 2024
Fsp4HI	GCNGC	6 cut(s)	385, 551, 834, 1286, 1407, 1760
FspBI	CTAG	3 cut(s)	540, 714, 2294
FspI	TGCGCA	1 cut(s)	2348
GlaI	GCGC	1 cut(s)	2348
GluI	GCNGC	6 cut(s)	385, 551, 834, 1286, 1407, 1760
HaeIII	GGCC	1 cut(s)	846
HapII	CCGG	2 cut(s)	435, 917
HgaI	GACGC	2 cut(s)	156, 427
HhaI	GCGC	1 cut(s)	2349
Hin1I	GRCGYC	1 cut(s)	438
Hin6I	GCGC	1 cut(s)	2347
HinP1I	GCGC	1 cut(s)	2347
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	3 cut(s)	1304, 1509, 1994
HinfI	GANTC	8 cut(s)	315, 419, 431, 485, 491, 1027, 1871, 2212
HpaII	CCGG	2 cut(s)	435, 917
HphI	GGTGA	2 cut(s)	650, 1678
Hpy166II	GTNNAC	3 cut(s)	442, 1464, 2242
Hpy188I	TCNGA	8 cut(s)	314, 424, 490, 508, 1260, 1422, 1738, 2211
Hpy188III	TCNNGA	9 cut(s)	917, 952, 1031, 1685, 1715, 1926, 2122, 2195, 2261
Hpy8I	GTNNAC	3 cut(s)	442, 1464, 2242
Hpy99I	CGWCG	2 cut(s)	443, 2201
HpyCH4III	ACNGT	4 cut(s)	56, 651, 1274, 1768
HpyCH4IV	ACGT	4 cut(s)	929, 1804, 2199, 2238
HpyF10VI	GCNNNNNNNGC	5 cut(s)	370, 852, 980, 1412, 1517
HpySE526I	ACGT	4 cut(s)	929, 1804, 2199, 2238
Hsp92I	GRCGYC	1 cut(s)	438
HspAI	GCGC	1 cut(s)	2347
KflI	GGGWCCC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	916
Ksp22I	TGATCA	1 cut(s)	1638
Kzo9I	GATC	4 cut(s)	919, 1122, 1638, 1893
LguI	GCTCTTC	2 cut(s)	12, 394
LmnI	GCTCC	6 cut(s)	27, 45, 142, 164, 694, 1336
Lsp1109I	GCAGC	4 cut(s)	820, 1297, 1393, 1771
LweI	GCATC	6 cut(s)	862, 970, 1255, 1402, 1573, 1966
MaeI	CTAG	3 cut(s)	540, 714, 2294
MaeII	ACGT	4 cut(s)	929, 1804, 2199, 2238
MaeIII	GTNAC	6 cut(s)	56, 706, 925, 1397, 1666, 1876
MalI	GATC	4 cut(s)	921, 1124, 1640, 1895
MbiI	CCGCTC	2 cut(s)	40, 387
MboI	GATC	4 cut(s)	919, 1122, 1638, 1893
MfeI	CAATTG	2 cut(s)	306, 1021
MflI	RGATCY	1 cut(s)	1122
MhlI	GDGCHC	3 cut(s)	102, 857, 1048
MluI	ACGCGT	1 cut(s)	1161
MlyI	GAGTC	2 cut(s)	1036, 1865
MmeI	TCCRAC	3 cut(s)	499, 580, 2183
Mph1103I	ATGCAT	6 cut(s)	985, 1270, 1417, 1483, 1588, 1798
MroI	TCCGGA	1 cut(s)	916
MroXI	GAANNNNTTC	1 cut(s)	806
MslI	CAYNNNNRTG	2 cut(s)	1610, 1910
MspI	CCGG	2 cut(s)	435, 917
MspR9I	CCNGG	1 cut(s)	1981
MunI	CAATTG	2 cut(s)	306, 1021
Mva1269I	GAATGC	2 cut(s)	1287, 1798
MvaI	CCWGG	1 cut(s)	1981
MvnI	CGCG	3 cut(s)	1163, 1520, 1911
MwoI	GCNNNNNNNGC	5 cut(s)	370, 852, 980, 1412, 1517
NdeI	CATATG	1 cut(s)	1798
NdeII	GATC	4 cut(s)	919, 1122, 1638, 1893
NlaIV	GGNNCC	5 cut(s)	294, 477, 478, 696, 1338
NmuCI	GTSAC	4 cut(s)	56, 925, 1397, 1666
NsbI	TGCGCA	1 cut(s)	2348
NsiI	ATGCAT	6 cut(s)	985, 1270, 1417, 1483, 1588, 1798
NspI	RCATGY	2 cut(s)	1362, 1534
PagI	TCATGA	1 cut(s)	951
PciI	ACATGT	1 cut(s)	1358
PciSI	GCTCTTC	2 cut(s)	12, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PctI	GAATGC	2 cut(s)	1287, 1798
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	6 cut(s)	315, 419, 431, 485, 491, 2212
PkrI	GCNGC	6 cut(s)	386, 552, 835, 1287, 1408, 1761
PleI	GAGTC	2 cut(s)	1035, 1865
PmaCI	CACGTG	1 cut(s)	1805
PmlI	CACGTG	1 cut(s)	1805
PpsI	GAGTC	2 cut(s)	1035, 1865
Ppu21I	YACGTR	1 cut(s)	1805
PpuMI	RGGWCCY	2 cut(s)	292, 476
PscI	ACATGT	1 cut(s)	1358
PshBI	ATTAAT	1 cut(s)	2067
PsiI	TTATAA	2 cut(s)	828, 1052
Psp5II	RGGWCCY	2 cut(s)	292, 476
Psp6I	CCWGG	1 cut(s)	1979
PspCI	CACGTG	1 cut(s)	1805
PspGI	CCWGG	1 cut(s)	1979
PspN4I	GGNNCC	5 cut(s)	294, 477, 478, 696, 1338
PspPI	GGNCC	3 cut(s)	220, 292, 476
PspPPI	RGGWCCY	2 cut(s)	292, 476
PstI	CTGCAG	2 cut(s)	375, 1411
PsuI	RGATCY	1 cut(s)	1122
RsaI	GTAC	2 cut(s)	459, 2202
RsaNI	GTAC	2 cut(s)	458, 2201
RseI	CAYNNNNRTG	2 cut(s)	1610, 1910
SalI	GTCGAC	1 cut(s)	440
SapI	GCTCTTC	2 cut(s)	12, 394
SatI	GCNGC	6 cut(s)	385, 551, 834, 1286, 1407, 1760
Sau3AI	GATC	4 cut(s)	919, 1122, 1638, 1893
Sau96I	GGNCC	3 cut(s)	220, 292, 476
SchI	GAGTC	2 cut(s)	1036, 1865
ScrFI	CCNGG	1 cut(s)	1981
SduI	GDGCHC	3 cut(s)	102, 857, 1048
SfaNI	GCATC	6 cut(s)	862, 970, 1255, 1402, 1573, 1966
SfcI	CTRYAG	2 cut(s)	371, 1407
SinI	GGWCC	3 cut(s)	220, 292, 476
SmiMI	CAYNNNNRTG	2 cut(s)	1610, 1910
SmlI	CTYRAG	1 cut(s)	1924
SmoI	CTYRAG	1 cut(s)	1924
SsiI	CCGC	6 cut(s)	25, 38, 382, 385, 550, 1909
SspI	AATATT	1 cut(s)	1255
SspMI	CTAG	3 cut(s)	540, 714, 2294
StyD4I	CCNGG	1 cut(s)	1979
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	4 cut(s)	56, 651, 1274, 1768
TaiI	ACGT	4 cut(s)	932, 1807, 2202, 2241
TaqI	TCGA	3 cut(s)	441, 935, 1130
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	2 cut(s)	387, 553
TfiI	GAWTC	6 cut(s)	315, 419, 431, 485, 491, 2212
TscAI	CASTG	6 cut(s)	453, 570, 976, 1498, 1612, 1773
TseFI	GTSAC	4 cut(s)	56, 925, 1397, 1666
TseI	GCWGC	4 cut(s)	833, 1285, 1406, 1759
Tsp45I	GTSAC	4 cut(s)	56, 925, 1397, 1666
TspRI	CASTG	6 cut(s)	453, 570, 976, 1498, 1612, 1773
VpaK11BI	GGWCC	3 cut(s)	220, 292, 476
VspI	ATTAAT	1 cut(s)	2067
XapI	RAATTY	3 cut(s)	1623, 1739, 2309
XceI	RCATGY	2 cut(s)	1362, 1534
XmaJI	CCTAGG	1 cut(s)	713
XmiI	GTMKAC	2 cut(s)	441, 1463
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	3 cut(s)	540, 714, 2294
Zsp2I	ATGCAT	6 cut(s)	985, 1270, 1417, 1483, 1588, 1798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.