Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329853.1

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 848

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 833 bp

atggctcttctacgccaacagctccgccctcctctcccgcttcccttaattcacagtcactcttcaacccaccatttcccaaaaccctgcctctttgtgctctccaaaaccctaagacgtttctctctctactcagctcctcctactcccacttccagctcctcagcctccattttccttccttttctccaagacgaagaagaagcagaagaagaagaggaccatgaagttgaagatgaagctgaagaagaagaagaagaggacccagatgacccaattgtcagattcttcaagtctcggacttcgacccaagacccacaacgagaaggcaagctctctctgcagaagaaccgccgctcttcttggcacttggctgacgatttagaccattccgcaagcgattccggcgtcgacccagtgctggaagcacaaaaacaacaactgggtccggtggattccgattctaatccattatcagatggaattgttggacagattttgcagaaagctaggaacttgccgcagaatatgacactgggagaggaactgggaggttttgaagggaaggttggggagaaggagtgtgtggaggttttggagttgatgggtgaggaaggattgctattgggttgcttgtatttctttgagtggatgggtttgcaggagccttctctggttactcctagggcttgttcagttttgtttcctattttggggagagctggaatgggagaaaagctggtggttctgtttaacaacttaccagccaagaaggagttcagggatgttcatgtttataatgctgcaatttctggcctcatgtgctctaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

277

Amino Acids

30.9

Weight (kDa)

4.73

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AasI	GACNNNNNNGTC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	357
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	6 cut(s)	25, 38, 352, 355, 393, 521
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	421, 713
AgsI	TTSAA	4 cut(s)	66, 233, 292, 560
AjuI	GAANNNNNNNTTGG	4 cut(s)	552, 584, 761, 793
AluBI	AGCT	8 cut(s)	22, 137, 159, 242, 334, 509, 722, 739
AluI	AGCT	8 cut(s)	22, 137, 159, 242, 334, 509, 722, 739
Alw21I	GWGCWC	2 cut(s)	102, 827
Alw26I	GTCTC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	776
AspA2I	CCTAGG	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	220, 262, 446
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	3 cut(s)	220, 262, 446
AvrII	CCTAGG	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	102, 827
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	790
BccI	CCATC	3 cut(s)	473, 598, 646
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	510, 684
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	355, 521, 804
BlnI	CCTAGG	1 cut(s)	683
BlsI	GCNGC	3 cut(s)	356, 522, 805
Bme18I	GGWCC	3 cut(s)	220, 262, 446
BmgT120I	GGNCC	3 cut(s)	220, 262, 446
BmiI	GGNNCC	3 cut(s)	264, 447, 666
BmrI	ACTGGG	4 cut(s)	410, 452, 545, 557
BmuI	ACTGGG	4 cut(s)	410, 452, 545, 557
Bpu10I	CCTNAGC	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	683
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 713
Bse1I	ACTGG	4 cut(s)	416, 447, 540, 552
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	2 cut(s)	657, 790
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	421, 713
BseMII	CTCAG	2 cut(s)	147, 177
BseNI	ACTGG	4 cut(s)	416, 447, 540, 552
BseRI	GAGGAG	3 cut(s)	21, 129, 151
BseXI	GCAGC	1 cut(s)	790
BshFI	GGCC	1 cut(s)	816
BsiHKAI	GWGCWC	2 cut(s)	102, 827
BsiSI	CCGG	2 cut(s)	405, 449
BslI	CCNNNNNNNGG	2 cut(s)	421, 713
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	816
Bsp1286I	GDGCHC	2 cut(s)	102, 827
BspACI	CCGC	6 cut(s)	25, 38, 352, 355, 393, 521
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	2 cut(s)	146, 176
BspLI	GGNNCC	3 cut(s)	264, 447, 666
BspMAI	CTGCAG	1 cut(s)	345
BspQI	GCTCTTC	2 cut(s)	12, 364
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	416, 447, 540, 552
BssECI	CCNNGG	1 cut(s)	683
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	5 cut(s)	12, 67, 210, 252, 364
BstACI	GRCGYC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	332, 397
BstDEI	CTNAG	3 cut(s)	113, 133, 163
BstF5I	GGATG	2 cut(s)	657, 790
BstMAI	GTCTC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 405, 822
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	657, 790
BtsIMutI	CAGTG	2 cut(s)	423, 533
Cac8I	GCNNGC	2 cut(s)	332, 397
Cfr13I	GGNCC	3 cut(s)	220, 262, 446
CseI	GACGC	1 cut(s)	397
CviAII	CATG	3 cut(s)	224, 791, 820
DdeI	CTNAG	3 cut(s)	113, 133, 163
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	5 cut(s)	12, 67, 210, 252, 364
EarI	CTCTTC	5 cut(s)	12, 67, 210, 252, 364
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	683
Eco47I	GGWCC	3 cut(s)	220, 262, 446
Eco57I	CTGAAG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	3 cut(s)	227, 794, 823
FaiI	YATR	5 cut(s)	225, 530, 792, 798, 821
FatI	CATG	3 cut(s)	223, 790, 819
FauI	CCCGC	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	355, 521, 804
FokI	GGATG	2 cut(s)	664, 797
Fsp4HI	GCNGC	3 cut(s)	355, 521, 804
FspBI	CTAG	2 cut(s)	510, 684
GluI	GCNGC	3 cut(s)	355, 521, 804
HaeIII	GGCC	1 cut(s)	816
HapII	CCGG	2 cut(s)	405, 449
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	227, 794, 823
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	4 cut(s)	285, 401, 455, 461
HpaII	CCGG	2 cut(s)	405, 449
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	284, 300, 460, 478
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	8 cut(s)	188, 320, 554, 559, 571, 608, 678, 766
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	343, 502, 661, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 405, 822
HpyF3I	CTNAG	3 cut(s)	113, 133, 163
HpySE526I	ACGT	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	227, 794, 823
LguI	GCTCTTC	2 cut(s)	12, 364
LmnI	GCTCC	4 cut(s)	27, 142, 164, 664
Lsp1109I	GCAGC	1 cut(s)	790
MaeI	CTAG	2 cut(s)	510, 684
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	56, 676
MbiI	CCGCTC	1 cut(s)	357
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	102, 827
MluCI	AATT	4 cut(s)	48, 276, 483, 807
MmeI	TCCRAC	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	776
MseI	TTAA	2 cut(s)	47, 753
MspI	CCGG	2 cut(s)	405, 449
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	340, 405, 822
NlaIII	CATG	3 cut(s)	227, 794, 823
NlaIV	GGNNCC	3 cut(s)	264, 447, 666
NmuCI	GTSAC	1 cut(s)	56
PciSI	GCTCTTC	2 cut(s)	12, 364
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	4 cut(s)	285, 401, 455, 461
PkrI	GCNGC	3 cut(s)	356, 522, 805
PpuMI	RGGWCCY	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	264, 447, 666
PspPI	GGNCC	3 cut(s)	220, 262, 446
PspPPI	RGGWCCY	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	410
SapI	GCTCTTC	2 cut(s)	12, 364
SaqAI	TTAA	2 cut(s)	47, 753
SatI	GCNGC	3 cut(s)	355, 521, 804
Sau96I	GGNCC	3 cut(s)	220, 262, 446
SduI	GDGCHC	2 cut(s)	102, 827
SfcI	CTRYAG	1 cut(s)	341
SinI	GGWCC	3 cut(s)	220, 262, 446
Sse9I	AATT	4 cut(s)	48, 276, 483, 807
SsiI	CCGC	6 cut(s)	25, 38, 352, 355, 393, 521
SspMI	CTAG	2 cut(s)	510, 684
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	305, 411
TasI	AATT	4 cut(s)	48, 276, 483, 807
TauI	GCSGC	2 cut(s)	357, 523
TfiI	GAWTC	4 cut(s)	285, 401, 455, 461
Tru1I	TTAA	2 cut(s)	47, 753
Tru9I	TTAA	2 cut(s)	47, 753
TscAI	CASTG	2 cut(s)	423, 540
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	240, 252, 779
TspRI	CASTG	2 cut(s)	423, 540
VpaK11BI	GGWCC	3 cut(s)	220, 262, 446
XmaJI	CCTAGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	2 cut(s)	510, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.