Rh2DG103300

(R)-mandelonitrile lyase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
8416504 .. 8417167
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG103300.1

Sequence Viewer

Length: 348 bp
ATGAATAAACTTTACAAGAAGGAGAATACATATAGACAAAGAAAGCCAAGTTACCTGAAGTTATTTTCCAACGCCACTGACTTCCCATCGGAGGACTACTATAATGTCTACATTACCAGCGGAGGTGGCACTGCTGGGTGCCCTTTGGCTGCGACACTATCATCCAGTTTTCGGGTCCTTCTGCTCAAAAGAGGTGTTGCTTATGGCAATCAAAACTTGATGACCCAGGATGGTTTCTGTCAGCACTCATGGATGTCAATGCCTCTGACTCTCTCACACAAGCCTTCACATCTGAAGATGGTGTTCCAAATGTCCGAGGACGCATTCTTGGAGGCAGCAGGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.96

Weight (kDa)

9.15

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 108
AciI CCGC 1 cut(s) 120
AcuI CTGAAG 2 cut(s) 77, 314
AfiI CCNNNNNNNGG 2 cut(s) 91, 171
AjnI CCWGG 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 149, 335
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 94, 224, 292
BciT130I CCWGG 1 cut(s) 227
BisI GCNGC 2 cut(s) 150, 336
BlsI GCNGC 2 cut(s) 151, 337
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 140, 176
BmrFI CCNGG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 225, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 171
Bse1I ACTGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 225, 315
BseGI GGATG 3 cut(s) 161, 235, 258
BseLI CCNNNNNNNGG 2 cut(s) 91, 171
BseNI ACTGG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 91, 171
BsmI GAATGC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 143
BspACI CCGC 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 140, 176
BspT107I GGYRCC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 225, 315
Bst2UI CCWGG 1 cut(s) 227
BstF5I GGATG 3 cut(s) 161, 235, 258
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 161, 235, 258
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 75, 129
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 329
CviAII CATG 1 cut(s) 249
CviJI RGCY 3 cut(s) 46, 149, 283
CviKI_1 RGCY 3 cut(s) 46, 149, 283
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 77, 314
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 252
FaiI YATR 5 cut(s) 31, 33, 102, 204, 250
FatI CATG 1 cut(s) 248
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 150, 336
FokI GGATG 3 cut(s) 148, 242, 265
Fsp4HI GCNGC 2 cut(s) 150, 336
GluI GCNGC 2 cut(s) 150, 336
GsaI CCCAGC 1 cut(s) 138
HgaI GACGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 252
HinfI GANTC 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 91, 267, 294, 316
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 13, 188, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 252
LpnPI CCDG 7 cut(s) 68, 120, 130, 178, 212, 239, 324
Lsp1109I GCAGC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 6 cut(s) 85, 116, 185, 273, 310, 325
MspA1I CMGCKG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 126
NlaIII CATG 1 cut(s) 252
NlaIV GGNNCC 2 cut(s) 140, 176
PctI GAATGC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 151, 337
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 140, 176
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
SatI GCNGC 2 cut(s) 150, 336
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 143
SetI ASST 3 cut(s) 57, 127, 196
SinI GGWCC 1 cut(s) 175
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 225
TscAI CASTG 2 cut(s) 82, 136
TseI GCWGC 2 cut(s) 149, 335
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 82, 136
VpaK11BI GGWCC 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.