Rh2BG023000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003877
Physical Location & Seq
Reverse (-)
1544680 .. 1545515
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG023000.1

Sequence Viewer

Length: 270 bp
ATGGCGAAGAACAACGCGTCACTCCTAGCTCTAAAATGTGTTCGTCCTCGACGCCTCGTCACTCCTTGTTCAGCGCGGCGGCGGCCGAGTAGGAGGAGAAAGGGGGAGGCTAGGTTAGGATTTGAGTTTGGGGAGTTATCTGCTCCAAATCGAAAAGTGAACAGTAAAGCTCAATTGAGTTTCTGGCTGAGCAGATTCTTAATGAGGAGTTGCCGGGTGGATCTTCTTGGACATTGGATGTGTTCACTGAACCATTTGTTGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.28

Weight (kDa)

11.62

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AccII CGCG 2 cut(s) 17, 76
AciI CCGC 3 cut(s) 76, 79, 82
AclWI GGATC 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 56
AjuI GAANNNNNNNTTGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 29, 170
AluI AGCT 2 cut(s) 29, 170
AlwI GGATC 1 cut(s) 228
AoxI GGCC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 215
BcnI CCSGG 1 cut(s) 215
BfaI CTAG 2 cut(s) 26, 111
BisI GCNGC 3 cut(s) 77, 80, 83
BlpI GCTNAGC 1 cut(s) 188
BlsI GCNGC 3 cut(s) 78, 81, 84
Bme1390I CCNGG 1 cut(s) 215
BmeRI GACNNNNNGTC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 109, 220
BseX3I CGGCCG 1 cut(s) 83
Bsh1236I CGCG 2 cut(s) 17, 76
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 85
BsiEI CGRYCG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 3 cut(s) 76, 79, 82
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 2 cut(s) 17, 76
BspPI GGATC 1 cut(s) 228
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 2 cut(s) 17, 76
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 2 cut(s) 17, 76
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 76
CseI GACGC 2 cut(s) 6, 60
CviJI RGCY 5 cut(s) 29, 85, 110, 170, 187
CviKI_1 RGCY 5 cut(s) 29, 85, 110, 170, 187
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 83
EagI CGGCCG 1 cut(s) 83
Eam1105I GACNNNNNGTC 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 77, 80, 83
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 3 cut(s) 77, 80, 83
FspBI CTAG 2 cut(s) 26, 111
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 77, 80, 83
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 214
HgaI GACGC 2 cut(s) 6, 60
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 52
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 160, 245
Hpy8I GTNNAC 2 cut(s) 160, 245
Hpy99I CGWCG 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 52
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 2 cut(s) 169, 227
MaeI CTAG 2 cut(s) 26, 111
MaeIII GTNAC 2 cut(s) 18, 58
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 19, 215
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 220
MluCI AATT 1 cut(s) 173
MluI ACGCGT 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 57, 65, 87, 100, 198
MseI TTAA 1 cut(s) 200
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 173
MvnI CGCG 2 cut(s) 17, 76
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 215
NdeII GATC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 2 cut(s) 18, 58
PfeI GAWTC 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 3 cut(s) 78, 81, 84
PsuI RGATCY 1 cut(s) 220
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 77, 80, 83
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 215
SetI ASST 3 cut(s) 31, 116, 172
Sse9I AATT 1 cut(s) 173
SsiI CCGC 3 cut(s) 76, 79, 82
SspMI CTAG 2 cut(s) 26, 111
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 2 cut(s) 49, 151
TasI AATT 1 cut(s) 173
TauI GCSGC 3 cut(s) 79, 82, 85
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 2 cut(s) 18, 58
Tsp45I GTSAC 2 cut(s) 18, 58
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 259
XspI CTAG 2 cut(s) 26, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.