Rroxscaffold_3G00263660

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003877
Physical Location & Seq
Forward (+)
57539563 .. 57543171
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263660.1

Sequence Viewer

Length: 2163 bp
ATGGCTCTTCTGCGCCAACAGCTCCGTCCTCCTCTCCCGCTTCCCTTAATTCACAGGCACTCTTCAACCCACCATTTCCCAAAACCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACGTTTCTCTCTCTACTCAGCTTCTCCTACCCCCACTTCCAGCTCCTCAGCCTCCATTTTCCTTCCTTTTCTCCAAGACGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAGGACCATGAAGTTGAAGATGAAGCTGAAGAAGAAGAAGAGGAGGACCCAGATGACCCAATTGTCAGATTTTTCAAGTCTCGGACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTCTCTCTGCAGAAGAACCGCCGATCTTCTTGGCACTTAGCTGACGATTTAGACGATTCCGAAAGCGATTCCGGCGTCGACCCAGTGCTGGAAGTACAAAAACAACAACTGGGTCCGGTGGATTCTGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGACCTTGCCGCAGAATTTGACACTGGGAGAGGAATTGGTAGGTTTTGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGACTTGATGGGTGAGGAGGGATTGTTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTATTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAACAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGACGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTTCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAAAAGAAAGGGATCTCATCGAACGCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATATGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCAGTGGCTGGTATGAGAAAGCTTACATTGCATTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCGTGCTGGCGACGCTGAGATGTTGATGAGGATTTGGAAATTGATGATCAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTGAGACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTTGCAAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA

Protein Analysis

720

Amino Acids

81.81

Weight (kDa)

6.21

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 264 - 309 1.1e-10 PPR repeat family
PPR_long PF17177 285 - 415 5.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 362 - 418 1.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 366 - 399 1.4e-08 PPR repeat
PPR_2 PF13041 371 - 418 9.9e-17 PPR repeat family
PPR PF01535 374 - 403 9e-09 PPR repeat
PPR_long PF17177 394 - 487 6.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 409 - 452 4.2e-09 PPR repeat family
PPR_3 PF13812 428 - 488 3.8e-11 Pentatricopeptide repeat domain
PPR_long PF17177 431 - 554 1.3e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 444 - 488 1.8e-07 PPR repeat family
TPR_24 PF23276 456 - 524 8.1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 480 - 523 3.3e-09 PPR repeat family
PPR_3 PF13812 501 - 556 2.9e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 511 - 560 3.4e-08 PPR repeat family
PPR_3 PF13812 549 - 593 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 549 - 595 3.5e-09 PPR repeat family
PPR_2 PF13041 581 - 628 1.4e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 807, 1031
AasI GACNNNNNNGTC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 420, 1442
AccII CGCG 2 cut(s) 1142, 1890
AccIII TCCGGA 1 cut(s) 895
AciI CCGC 4 cut(s) 38, 361, 530, 1888
AclWI GGATC 2 cut(s) 906, 1109
AcsI RAATTY 2 cut(s) 535, 1718
AcuI CTGAAG 3 cut(s) 273, 1076, 1194
AcvI CACGTG 1 cut(s) 1784
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 430, 722
AflIII ACRYGT 3 cut(s) 908, 1140, 1337
AjiI CACGTC 1 cut(s) 909
AjnI CCWGG 1 cut(s) 1958
AjuI GAANNNNNNNTTGG 4 cut(s) 561, 593, 770, 802
Alw21I GWGCWC 2 cut(s) 102, 836
Alw26I GTCTC 3 cut(s) 309, 863, 1837
AlwI GGATC 2 cut(s) 906, 1109
AlwNI CAGNNNCTG 1 cut(s) 1476
Aor13HI TCCGGA 1 cut(s) 895
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 4 cut(s) 812, 1264, 1385, 1738
ApoI RAATTY 2 cut(s) 535, 1718
AseI ATTAAT 1 cut(s) 2046
Asp700I GAANNNNTTC 1 cut(s) 785
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 4 cut(s) 229, 271, 455, 522
AsuHPI GGTGA 2 cut(s) 629, 1657
AvaII GGWCC 4 cut(s) 229, 271, 455, 522
AvrII CCTAGG 1 cut(s) 692
BbrPI CACGTG 1 cut(s) 1784
Bbv12I GWGCWC 2 cut(s) 102, 836
BbvCI CCTCAGC 1 cut(s) 163
BbvI GCAGC 4 cut(s) 799, 1276, 1372, 1750
BccI CCATC 9 cut(s) 482, 607, 655, 868, 1234, 1661, 1819, 1924, 2050
BciT130I CCWGG 1 cut(s) 1960
BclI TGATCA 1 cut(s) 1617
BcoDI GTCTC 3 cut(s) 309, 863, 1837
BfaI CTAG 2 cut(s) 519, 693
BfmI CTRYAG 2 cut(s) 350, 1386
BisI GCNGC 5 cut(s) 530, 813, 1265, 1386, 1739
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 5 cut(s) 531, 814, 1266, 1387, 1740
Bme1390I CCNGG 1 cut(s) 1960
Bme18I GGWCC 4 cut(s) 229, 271, 455, 522
BmgBI CACGTC 1 cut(s) 909
BmgT120I GGNCC 4 cut(s) 229, 271, 455, 522
BmiI GGNNCC 4 cut(s) 273, 456, 675, 1317
BmrFI CCNGG 1 cut(s) 1960
BmrI ACTGGG 3 cut(s) 419, 461, 554
BmsI GCATC 5 cut(s) 841, 1234, 1381, 1552, 1945
BmuI ACTGGG 3 cut(s) 419, 461, 554
Bpu10I CCTNAGC 2 cut(s) 163, 1976
BpuEI CTTGAG 1 cut(s) 1888
BsaAI YACGTR 1 cut(s) 1784
BsaBI GATNNNNATC 2 cut(s) 474, 926
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 1837
BsaJI CCNNGG 1 cut(s) 692
BsaWI WCCGGW 2 cut(s) 457, 895
BsaXI ACNNNNNCTCC 4 cut(s) 575, 605, 614, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 722
Bse1I ACTGG 3 cut(s) 425, 456, 549
Bse3DI GCAATG 1 cut(s) 1494
Bse8I GATNNNNATC 2 cut(s) 474, 926
BseAI TCCGGA 1 cut(s) 895
BseBI CCWGG 1 cut(s) 1960
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 7 cut(s) 666, 799, 1249, 1410, 1567, 1884, 1996
BseJI GATNNNNATC 2 cut(s) 474, 926
BseLI CCNNNNNNNGG 2 cut(s) 430, 722
BseMI GCAATG 1 cut(s) 1494
BseMII CTCAG 6 cut(s) 147, 177, 1179, 1260, 1391, 1578
BseNI ACTGG 3 cut(s) 425, 456, 549
BseRI GAGGAG 4 cut(s) 21, 151, 281, 635
BseXI GCAGC 4 cut(s) 799, 1276, 1372, 1750
Bsh1236I CGCG 2 cut(s) 1142, 1890
BshFI GGCC 1 cut(s) 825
BsiHKAI GWGCWC 2 cut(s) 102, 836
BsiSI CCGG 3 cut(s) 414, 458, 896
BslFI GGGAC 3 cut(s) 980, 1410, 1651
BslI CCNNNNNNNGG 2 cut(s) 430, 722
BsmAI GTCTC 3 cut(s) 309, 863, 1837
BsmBI CGTCTC 1 cut(s) 863
BsmFI GGGAC 3 cut(s) 980, 1410, 1651
BsmI GAATGC 2 cut(s) 1266, 1777
BsnI GGCC 1 cut(s) 825
Bso31I GGTCTC 1 cut(s) 1837
Bsp1286I GDGCHC 2 cut(s) 102, 836
Bsp13I TCCGGA 1 cut(s) 895
Bsp143I GATC 5 cut(s) 365, 898, 1101, 1617, 1872
BspACI CCGC 4 cut(s) 38, 361, 530, 1888
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 6 cut(s) 146, 176, 1180, 1261, 1392, 1579
BspEI TCCGGA 1 cut(s) 895
BspFNI CGCG 2 cut(s) 1142, 1890
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 4 cut(s) 273, 456, 675, 1317
BspMAI CTGCAG 2 cut(s) 354, 1390
BspPI GGATC 2 cut(s) 906, 1109
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 1837
BsrDI GCAATG 1 cut(s) 1494
BsrI ACTGG 3 cut(s) 425, 456, 549
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 5 cut(s) 365, 898, 1101, 1617, 1872
BssNAI GTATAC 1 cut(s) 1443
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 692
Bst1107I GTATAC 1 cut(s) 1443
Bst2UI CCWGG 1 cut(s) 1960
Bst4CI ACNGT 2 cut(s) 1253, 1747
Bst6I CTCTTC 6 cut(s) 12, 67, 219, 258, 1052, 1665
BstACI GRCGYC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 2138
BstBAI YACGTR 1 cut(s) 1784
BstC8I GCNNGC 4 cut(s) 341, 1575, 1579, 1892
BstF5I GGATG 7 cut(s) 666, 799, 1249, 1410, 1567, 1884, 1996
BstFNI CGCG 2 cut(s) 1142, 1890
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 5 cut(s) 368, 901, 1104, 1620, 1875
BstMAI GTCTC 3 cut(s) 309, 863, 1837
BstMBI GATC 5 cut(s) 365, 898, 1101, 1617, 1872
BstMWI GCNNNNNNNGC 9 cut(s) 19, 349, 414, 831, 959, 1391, 1496, 1583, 2138
BstNI CCWGG 1 cut(s) 1960
BstNSI RCATGY 2 cut(s) 1341, 1513
BstSCI CCNGG 1 cut(s) 1958
BstSFI CTRYAG 2 cut(s) 350, 1386
BstUI CGCG 2 cut(s) 1142, 1890
BstV1I GCAGC 4 cut(s) 799, 1276, 1372, 1750
BstX2I RGATCY 1 cut(s) 1101
BstYI RGATCY 1 cut(s) 1101
BstZ17I GTATAC 1 cut(s) 1443
BsuRI GGCC 1 cut(s) 825
BtrI CACGTC 1 cut(s) 909
BtsCI GGATG 7 cut(s) 666, 799, 1249, 1410, 1567, 1884, 1996
BtsI GCAGTG 1 cut(s) 955
BtsIMutI CAGTG 5 cut(s) 432, 542, 955, 1477, 1752
Cac8I GCNNGC 4 cut(s) 341, 1575, 1579, 1892
CaiI CAGNNNCTG 1 cut(s) 1476
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 4 cut(s) 229, 271, 455, 522
CseI GACGC 3 cut(s) 406, 968, 1592
Csp6I GTAC 1 cut(s) 437
CspCI CAANNNNNGTGG 4 cut(s) 1689, 1724, 1797, 1832
CviQI GTAC 1 cut(s) 437
DpnI GATC 5 cut(s) 367, 900, 1103, 1619, 1874
DpnII GATC 5 cut(s) 365, 898, 1101, 1617, 1872
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
Eam1104I CTCTTC 6 cut(s) 12, 67, 219, 258, 1052, 1665
EarI CTCTTC 6 cut(s) 12, 67, 219, 258, 1052, 1665
Eco130I CCWWGG 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 1837
Eco47I GGWCC 4 cut(s) 229, 271, 455, 522
Eco57I CTGAAG 3 cut(s) 273, 1076, 1194
Eco72I CACGTG 1 cut(s) 1784
EcoO109I RGGNCCY 2 cut(s) 271, 522
EcoRII CCWGG 1 cut(s) 1958
EcoT14I CCWWGG 1 cut(s) 692
EcoT22I ATGCAT 5 cut(s) 1249, 1396, 1462, 1567, 1777
ErhI CCWWGG 1 cut(s) 692
Esp3I CGTCTC 1 cut(s) 863
FaqI GGGAC 3 cut(s) 980, 1410, 1651
FauI CCCGC 1 cut(s) 45
FauNDI CATATG 1 cut(s) 1777
FbaI TGATCA 1 cut(s) 1617
FblI GTMKAC 2 cut(s) 420, 1442
Fnu4HI GCNGC 5 cut(s) 530, 813, 1265, 1386, 1739
FokI GGATG 7 cut(s) 673, 806, 1256, 1417, 1574, 1871, 2003
Fsp4HI GCNGC 5 cut(s) 530, 813, 1265, 1386, 1739
FspBI CTAG 2 cut(s) 519, 693
GlaI GCGC 1 cut(s) 14
GluI GCNGC 5 cut(s) 530, 813, 1265, 1386, 1739
HaeIII GGCC 1 cut(s) 825
HapII CCGG 3 cut(s) 414, 458, 896
HgaI GACGC 3 cut(s) 406, 968, 1592
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 417
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 2 cut(s) 421, 2146
HindII GTYRAC 2 cut(s) 421, 2146
HindIII AAGCTT 3 cut(s) 1283, 1488, 1973
HinfI GANTC 6 cut(s) 398, 410, 464, 470, 1006, 1850
HpaI GTTAAC 1 cut(s) 2146
HpaII CCGG 3 cut(s) 414, 458, 896
HphI GGTGA 2 cut(s) 629, 1657
Hpy166II GTNNAC 3 cut(s) 421, 1443, 2146
Hpy188I TCNGA 8 cut(s) 293, 309, 403, 469, 487, 1239, 1401, 1717
Hpy188III TCNNGA 7 cut(s) 896, 931, 1010, 1664, 1694, 1905, 2101
Hpy8I GTNNAC 3 cut(s) 421, 1443, 2146
Hpy99I CGWCG 2 cut(s) 422, 1586
HpyCH4III ACNGT 2 cut(s) 1253, 1747
HpyCH4IV ACGT 3 cut(s) 118, 908, 1783
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 349, 414, 831, 959, 1391, 1496, 1583, 2138
HpySE526I ACGT 3 cut(s) 118, 908, 1783
Hsp92I GRCGYC 1 cut(s) 417
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 895
Ksp22I TGATCA 1 cut(s) 1617
KspAI GTTAAC 1 cut(s) 2146
Kzo9I GATC 5 cut(s) 365, 898, 1101, 1617, 1872
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 4 cut(s) 27, 164, 673, 1315
Lsp1109I GCAGC 4 cut(s) 799, 1276, 1372, 1750
LweI GCATC 5 cut(s) 841, 1234, 1381, 1552, 1945
MaeI CTAG 2 cut(s) 519, 693
MaeII ACGT 3 cut(s) 118, 908, 1783
MaeIII GTNAC 5 cut(s) 685, 904, 1376, 1645, 1855
MalI GATC 5 cut(s) 367, 900, 1103, 1619, 1874
MboI GATC 5 cut(s) 365, 898, 1101, 1617, 1872
MfeI CAATTG 2 cut(s) 285, 1000
MflI RGATCY 1 cut(s) 1101
MhlI GDGCHC 2 cut(s) 102, 836
MluI ACGCGT 1 cut(s) 1140
MlyI GAGTC 2 cut(s) 1015, 1844
MmeI TCCRAC 1 cut(s) 478
Mph1103I ATGCAT 5 cut(s) 1249, 1396, 1462, 1567, 1777
MroI TCCGGA 1 cut(s) 895
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 9 cut(s) 47, 762, 1133, 1209, 1230, 1526, 2046, 2073, 2145
MslI CAYNNNNRTG 1 cut(s) 1889
MspA1I CMGCKG 1 cut(s) 1813
MspI CCGG 3 cut(s) 414, 458, 896
MspR9I CCNGG 1 cut(s) 1960
MunI CAATTG 2 cut(s) 285, 1000
Mva1269I GAATGC 2 cut(s) 1266, 1777
MvaI CCWGG 1 cut(s) 1960
MvnI CGCG 2 cut(s) 1142, 1890
MwoI GCNNNNNNNGC 9 cut(s) 19, 349, 414, 831, 959, 1391, 1496, 1583, 2138
NdeI CATATG 1 cut(s) 1777
NdeII GATC 5 cut(s) 365, 898, 1101, 1617, 1872
NlaIV GGNNCC 4 cut(s) 273, 456, 675, 1317
NmuCI GTSAC 3 cut(s) 904, 1376, 1645
NsiI ATGCAT 5 cut(s) 1249, 1396, 1462, 1567, 1777
NspI RCATGY 2 cut(s) 1341, 1513
PagI TCATGA 1 cut(s) 930
PciI ACATGT 1 cut(s) 1337
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 2 cut(s) 1266, 1777
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 4 cut(s) 398, 410, 464, 470
PkrI GCNGC 5 cut(s) 531, 814, 1266, 1387, 1740
PleI GAGTC 2 cut(s) 1014, 1844
PmaCI CACGTG 1 cut(s) 1784
PmlI CACGTG 1 cut(s) 1784
PpsI GAGTC 2 cut(s) 1014, 1844
Ppu21I YACGTR 1 cut(s) 1784
PpuMI RGGWCCY 2 cut(s) 271, 522
PscI ACATGT 1 cut(s) 1337
PshBI ATTAAT 1 cut(s) 2046
PsiI TTATAA 2 cut(s) 807, 1031
Psp5II RGGWCCY 2 cut(s) 271, 522
Psp6I CCWGG 1 cut(s) 1958
PspCI CACGTG 1 cut(s) 1784
PspGI CCWGG 1 cut(s) 1958
PspN4I GGNNCC 4 cut(s) 273, 456, 675, 1317
PspPI GGNCC 4 cut(s) 229, 271, 455, 522
PspPPI RGGWCCY 2 cut(s) 271, 522
PstI CTGCAG 2 cut(s) 354, 1390
PstNI CAGNNNCTG 1 cut(s) 1476
PsuI RGATCY 1 cut(s) 1101
PvuII CAGCTG 1 cut(s) 1813
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 1889
SalI GTCGAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 9 cut(s) 47, 762, 1133, 1209, 1230, 1526, 2046, 2073, 2145
SatI GCNGC 5 cut(s) 530, 813, 1265, 1386, 1739
Sau3AI GATC 5 cut(s) 365, 898, 1101, 1617, 1872
Sau96I GGNCC 4 cut(s) 229, 271, 455, 522
SchI GAGTC 2 cut(s) 1015, 1844
ScrFI CCNGG 1 cut(s) 1960
SduI GDGCHC 2 cut(s) 102, 836
SfaNI GCATC 5 cut(s) 841, 1234, 1381, 1552, 1945
SfcI CTRYAG 2 cut(s) 350, 1386
SinI GGWCC 4 cut(s) 229, 271, 455, 522
SmiMI CAYNNNNRTG 1 cut(s) 1889
SmlI CTYRAG 1 cut(s) 1903
SmoI CTYRAG 1 cut(s) 1903
SsiI CCGC 4 cut(s) 38, 361, 530, 1888
SspI AATATT 1 cut(s) 1234
SspMI CTAG 2 cut(s) 519, 693
StyD4I CCNGG 1 cut(s) 1958
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 2 cut(s) 1253, 1747
TaiI ACGT 3 cut(s) 121, 911, 1786
TaqI TCGA 3 cut(s) 420, 914, 1109
TatI WGTACW 1 cut(s) 436
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 4 cut(s) 398, 410, 464, 470
Tru1I TTAA 9 cut(s) 47, 762, 1133, 1209, 1230, 1526, 2046, 2073, 2145
Tru9I TTAA 9 cut(s) 47, 762, 1133, 1209, 1230, 1526, 2046, 2073, 2145
TscAI CASTG 5 cut(s) 432, 549, 955, 1477, 1752
TseFI GTSAC 3 cut(s) 904, 1376, 1645
TseI GCWGC 4 cut(s) 812, 1264, 1385, 1738
Tsp45I GTSAC 3 cut(s) 904, 1376, 1645
TspDTI ATGAA 9 cut(s) 249, 261, 788, 861, 998, 1151, 1208, 1421, 1784
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 5 cut(s) 432, 549, 955, 1477, 1752
VpaK11BI GGWCC 4 cut(s) 229, 271, 455, 522
VspI ATTAAT 1 cut(s) 2046
XapI RAATTY 2 cut(s) 535, 1718
XceI RCATGY 2 cut(s) 1341, 1513
XmaJI CCTAGG 1 cut(s) 692
XmiI GTMKAC 2 cut(s) 420, 1442
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 2 cut(s) 519, 693
Zsp2I ATGCAT 5 cut(s) 1249, 1396, 1462, 1567, 1777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.