RchiOBHm_Chr2g0103631

(R)-mandelonitrile lyase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003877
Physical Location & Seq
Reverse (-)
15076331 .. 15077433
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47799

Sequence Viewer

Length: 402 bp
ATGCCGTCGTCGCTTCTTCGAGGCCGTCGTCTCGGAACCCACGCCGGCGTCGTCAAGAGCCAAGTTACCTTAAGTTTGTTTCCAACGCCACTGGGGGAGTACTATAAGGACTACATTATCAGCGGAGGTGGCACTGCTGGGTGCCCTTTGGCTGCGACACTATCATCCAGGTTTCGGGTCCTCCTGCTCAAAAGTGGTGGCGTTGCTTATGGCAATCAAAACTTGATGTCCCAGGATGGTTTCTGTCAGAACTCATGGATGTCAATGCCCACACAAGCCTTCACATCTGAAGATGGTGTTCCAAATGTCCAAGGACGCATTCTTGGAGGCAGCAGGGCCATGAATGCTGGTTTCTATATCCCCGCAGATCAGGAGTTCTTCGAAAGATCCACTTTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko01110 map00460 map01110
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

133

Amino Acids

14.32

Weight (kDa)

9.1

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AciI CCGC 2 cut(s) 123, 363
AclWI GGATC 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 174
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 397
AjnI CCWGG 2 cut(s) 167, 231
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 381
AoxI GGCC 2 cut(s) 22, 336
ApeKI GCWGC 2 cut(s) 152, 330
AspS9I GGNCC 2 cut(s) 178, 336
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 139, 342
BccI CCATC 2 cut(s) 230, 287
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 169, 233
BcoDI GTCTC 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 2 cut(s) 153, 331
BlsI GCNGC 2 cut(s) 154, 332
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 169, 233
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 178, 336
BmiI GGNNCC 3 cut(s) 37, 143, 179
BmrFI CCNGG 2 cut(s) 169, 233
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 231, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 169, 233
BseDI CCNNGG 2 cut(s) 231, 310
BseGI GGATG 3 cut(s) 164, 241, 264
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 2 cut(s) 139, 342
BseYI CCCAGC 1 cut(s) 137
BshFI GGCC 2 cut(s) 24, 338
BshNI GGYRCC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 2 cut(s) 318, 349
BsnI GGCC 2 cut(s) 24, 338
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 367, 386
BspACI CCGC 2 cut(s) 123, 363
BspANI GGCC 2 cut(s) 24, 338
BspLI GGNNCC 3 cut(s) 37, 143, 179
BspPI GGATC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 231, 310
BssMI GATC 2 cut(s) 367, 386
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 169, 233
BstACI GRCGYC 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 3 cut(s) 164, 241, 264
BstKTI GATC 2 cut(s) 370, 389
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 367, 386
BstMWI GCNNNNNNNGC 3 cut(s) 10, 129, 344
BstNI CCWGG 2 cut(s) 169, 233
BstSCI CCNGG 2 cut(s) 167, 231
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 139, 342
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 2 cut(s) 24, 338
BtsCI GGATG 3 cut(s) 164, 241, 264
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 89, 132
Cac8I GCNNGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 178, 336
CseI GACGC 2 cut(s) 37, 324
Csp6I GTAC 1 cut(s) 100
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 2 cut(s) 255, 340
CviJI RGCY 5 cut(s) 24, 60, 152, 278, 338
CviKI_1 RGCY 5 cut(s) 24, 60, 152, 278, 338
CviQI GTAC 1 cut(s) 100
DpnI GATC 2 cut(s) 369, 388
DpnII GATC 2 cut(s) 367, 386
Eco130I CCWWGG 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 167, 231
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 258, 343
FaiI YATR 5 cut(s) 105, 210, 256, 341, 357
FalI AAGNNNNNCTT 1 cut(s) 376
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 254, 339
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 153, 331
FokI GGATG 3 cut(s) 151, 248, 271
Fsp4HI GCNGC 2 cut(s) 153, 331
GluI GCNGC 2 cut(s) 153, 331
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 24, 338
HapII CCGG 1 cut(s) 45
HgaI GACGC 2 cut(s) 37, 324
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 258, 343
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 35, 249, 289
Hpy188III TCNNGA 2 cut(s) 55, 371
Hpy99I CGWCG 4 cut(s) 10, 13, 30, 53
HpyAV CCTTC 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 129, 344
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 258, 343
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 367, 386
Lsp1109I GCAGC 2 cut(s) 139, 342
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 369, 388
MboI GATC 2 cut(s) 367, 386
MboII GAAGA 3 cut(s) 8, 302, 370
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 4 cut(s) 14, 119, 191, 320
MreI CGCCGGCG 1 cut(s) 44
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 123
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 169, 233
MunI CAATTG 1 cut(s) 397
Mva1269I GAATGC 2 cut(s) 318, 349
MvaI CCWGG 2 cut(s) 169, 233
MwoI GCNNNNNNNGC 3 cut(s) 10, 129, 344
NaeI GCCGGC 1 cut(s) 46
NdeII GATC 2 cut(s) 367, 386
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 2 cut(s) 258, 343
NlaIV GGNNCC 3 cut(s) 37, 143, 179
NspV TTCGAA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 48
PctI GAATGC 2 cut(s) 318, 349
PdiI GCCGGC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 154, 332
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 167, 231
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 167, 231
PspN4I GGNNCC 3 cut(s) 37, 143, 179
PspPI GGNCC 2 cut(s) 178, 336
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 153, 331
Sau3AI GATC 2 cut(s) 367, 386
Sau96I GGNCC 2 cut(s) 178, 336
ScaI AGTACT 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 169, 233
SduI GDGCHC 1 cut(s) 146
SetI ASST 3 cut(s) 71, 130, 173
SfuI TTCGAA 1 cut(s) 381
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 1 cut(s) 397
SsiI CCGC 2 cut(s) 123, 363
StyD4I CCNGG 2 cut(s) 167, 231
StyI CCWWGG 1 cut(s) 310
TaqI TCGA 2 cut(s) 19, 381
TasI AATT 1 cut(s) 397
TatI WGTACW 1 cut(s) 99
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 96, 139
TseI GCWGC 2 cut(s) 152, 330
TspDTI ATGAA 1 cut(s) 356
TspRI CASTG 2 cut(s) 96, 139
Vha464I CTTAAG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.