RchiOBHm_Chr7g0191671

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003877
Physical Location & Seq
Reverse (-)
10344989 .. 10348507
3519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17129

Sequence Viewer

Length: 2148 bp
ATGGCTCTTCTACGCCAACAGCTCCGCCCTCCTCTGCCGCTTCCCTTAATTCACAGTCACACTTCAACCCACCATTTCCCAAAGCCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACGTTTCTCTCTCTACTCAGCTCCTCCTACTCCCACTTCCAGCTCCTCACCCTCCATTTTCCTTCCATTTCTCCAAGACGAAGAAGAAGCAGAAGAAGAAGAAGAGGACCATGAAGTTGAAGATGAAGCTGAAGAAGAAGAGGACCCAGATGACCCAATTGTCAGATTCTTCAAGTCTCGGACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTGTCTCTGCAGAAGAACCGCCGCTCTTCTTGGCACTTGGCTGACGATTTAGACCATTCCGCAAGCGATTCCGGCGTCAACCCAGTGCTGGAAGCACAAAAACAACAACTGGGTCCGGATTCCGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCCGCAGAATATGACACTGGGAGAGGAACTGGGAGGTTTTGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAAGGATTGCTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTGCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAAAAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATGAACAGGAAAGGTGTCAATTGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCAAACGCCATTGTGTATAATACTTTAATGAACGCGTTTTGTAATTCTAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATGTGGGATTGGAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCGGTGGCTGGCATGAGAAAGCTTACATCGCATTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATTAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTGAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTTGCAAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA

Protein Analysis

715

Amino Acids

81.02

Weight (kDa)

7.58

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 259 - 304 1.6e-10 PPR repeat family
PPR_long PF17177 273 - 410 3.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 320 - 379 9.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 337 - 379 4.8e-07 PPR repeat family
PPR_3 PF13812 357 - 413 1.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 361 - 394 1.4e-08 PPR repeat
PPR_2 PF13041 366 - 413 9.9e-17 PPR repeat family
PPR PF01535 369 - 398 8.9e-09 PPR repeat
PPR_long PF17177 390 - 493 2.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 400 - 447 4.7e-09 PPR repeat family
PPR_3 PF13812 423 - 483 5.6e-11 Pentatricopeptide repeat domain
PPR_long PF17177 425 - 550 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 435 - 483 2.9e-09 PPR repeat family
PPR_2 PF13041 474 - 518 1.7e-08 PPR repeat family
PPR_3 PF13812 496 - 551 2.5e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 506 - 555 2e-08 PPR repeat family
PPR_2 PF13041 544 - 590 3.5e-09 PPR repeat family
PPR_3 PF13812 544 - 588 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 576 - 623 5.9e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 792, 1016
AasI GACNNNNNNGTC 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 1427
AccII CGCG 2 cut(s) 1127, 1875
AccIII TCCGGA 2 cut(s) 445, 880
AciI CCGC 7 cut(s) 25, 38, 349, 352, 390, 515, 1873
AclWI GGATC 2 cut(s) 891, 1094
AcsI RAATTY 2 cut(s) 1587, 1703
AcuI CTGAAG 3 cut(s) 267, 1061, 1179
AcvI CACGTG 1 cut(s) 1769
AcyI GRCGYC 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 418, 707
AflIII ACRYGT 3 cut(s) 893, 1125, 1322
AjiI CACGTC 1 cut(s) 894
AjnI CCWGG 1 cut(s) 1943
AjuI GAANNNNNNNTTGG 4 cut(s) 546, 578, 755, 787
Alw21I GWGCWC 3 cut(s) 102, 821, 1012
Alw26I GTCTC 3 cut(s) 297, 339, 848
AlwI GGATC 2 cut(s) 891, 1094
Aor13HI TCCGGA 2 cut(s) 445, 880
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 4 cut(s) 797, 1249, 1370, 1723
ApoI RAATTY 2 cut(s) 1587, 1703
AseI ATTAAT 1 cut(s) 2031
Asp700I GAANNNNTTC 1 cut(s) 770
AspA2I CCTAGG 1 cut(s) 677
AspS9I GGNCC 3 cut(s) 223, 259, 443
AsuHPI GGTGA 3 cut(s) 156, 614, 1642
AvaII GGWCC 3 cut(s) 223, 259, 443
AvrII CCTAGG 1 cut(s) 677
BbrPI CACGTG 1 cut(s) 1769
Bbv12I GWGCWC 3 cut(s) 102, 821, 1012
BbvI GCAGC 4 cut(s) 784, 1261, 1357, 1735
BccI CCATC 9 cut(s) 467, 592, 640, 853, 1219, 1646, 1804, 1909, 2035
BciT130I CCWGG 1 cut(s) 1945
BcoDI GTCTC 3 cut(s) 297, 339, 848
BfaI CTAG 2 cut(s) 504, 678
BfmI CTRYAG 2 cut(s) 338, 1371
BisI GCNGC 7 cut(s) 38, 352, 515, 798, 1250, 1371, 1724
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 7 cut(s) 39, 353, 516, 799, 1251, 1372, 1725
Bme1390I CCNGG 1 cut(s) 1945
Bme18I GGWCC 3 cut(s) 223, 259, 443
BmgBI CACGTC 1 cut(s) 894
BmgT120I GGNCC 3 cut(s) 223, 259, 443
BmiI GGNNCC 4 cut(s) 261, 444, 660, 1302
BmrFI CCNGG 1 cut(s) 1945
BmrI ACTGGG 4 cut(s) 407, 449, 539, 551
BmsI GCATC 6 cut(s) 826, 934, 1219, 1366, 1537, 1930
BmuI ACTGGG 4 cut(s) 407, 449, 539, 551
Bpu10I CCTNAGC 1 cut(s) 1961
BpuEI CTTGAG 1 cut(s) 1873
BsaAI YACGTR 1 cut(s) 1769
BsaBI GATNNNNATC 2 cut(s) 459, 911
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 677
BsaWI WCCGGW 2 cut(s) 445, 880
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 707
Bse1I ACTGG 4 cut(s) 413, 444, 534, 546
Bse8I GATNNNNATC 2 cut(s) 459, 911
BseAI TCCGGA 2 cut(s) 445, 880
BseBI CCWGG 1 cut(s) 1945
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 8 cut(s) 651, 784, 1234, 1294, 1395, 1552, 1869, 1981
BseJI GATNNNNATC 2 cut(s) 459, 911
BseLI CCNNNNNNNGG 2 cut(s) 418, 707
BseMII CTCAG 5 cut(s) 147, 1164, 1245, 1376, 1563
BseNI ACTGG 4 cut(s) 413, 444, 534, 546
BseRI GAGGAG 3 cut(s) 21, 129, 151
BseXI GCAGC 4 cut(s) 784, 1261, 1357, 1735
Bsh1236I CGCG 2 cut(s) 1127, 1875
BshFI GGCC 1 cut(s) 810
BsiHKAI GWGCWC 3 cut(s) 102, 821, 1012
BsiSI CCGG 3 cut(s) 402, 446, 881
BslFI GGGAC 3 cut(s) 965, 1395, 1636
BslI CCNNNNNNNGG 2 cut(s) 418, 707
BsmAI GTCTC 3 cut(s) 297, 339, 848
BsmBI CGTCTC 1 cut(s) 848
BsmFI GGGAC 3 cut(s) 965, 1395, 1636
BsmI GAATGC 2 cut(s) 1251, 1762
BsnI GGCC 1 cut(s) 810
Bsp1286I GDGCHC 3 cut(s) 102, 821, 1012
Bsp13I TCCGGA 2 cut(s) 445, 880
Bsp143I GATC 3 cut(s) 883, 1086, 1857
BspACI CCGC 7 cut(s) 25, 38, 349, 352, 390, 515, 1873
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 5 cut(s) 146, 1165, 1246, 1377, 1564
BspEI TCCGGA 2 cut(s) 445, 880
BspFNI CGCG 2 cut(s) 1127, 1875
BspHI TCATGA 1 cut(s) 915
BspLI GGNNCC 4 cut(s) 261, 444, 660, 1302
BspMAI CTGCAG 2 cut(s) 342, 1375
BspPI GGATC 2 cut(s) 891, 1094
BspQI GCTCTTC 2 cut(s) 12, 361
BsrBI CCGCTC 1 cut(s) 354
BsrI ACTGG 4 cut(s) 413, 444, 534, 546
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 3 cut(s) 883, 1086, 1857
BssNAI GTATAC 1 cut(s) 1428
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 677
Bst1107I GTATAC 1 cut(s) 1428
Bst2UI CCWGG 1 cut(s) 1945
Bst4CI ACNGT 3 cut(s) 56, 1238, 1732
Bst6I CTCTTC 6 cut(s) 12, 213, 249, 361, 1037, 1650
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 2 cut(s) 944, 2123
BstBAI YACGTR 1 cut(s) 1769
BstC8I GCNNGC 6 cut(s) 329, 394, 1463, 1560, 1564, 1877
BstDEI CTNAG 8 cut(s) 113, 133, 1173, 1254, 1385, 1572, 1626, 1961
BstF5I GGATG 8 cut(s) 651, 784, 1234, 1294, 1395, 1552, 1869, 1981
BstFNI CGCG 2 cut(s) 1127, 1875
BstKTI GATC 3 cut(s) 886, 1089, 1860
BstMAI GTCTC 3 cut(s) 297, 339, 848
BstMBI GATC 3 cut(s) 883, 1086, 1857
BstMWI GCNNNNNNNGC 7 cut(s) 337, 402, 816, 944, 1376, 1481, 2123
BstNI CCWGG 1 cut(s) 1945
BstNSI RCATGY 3 cut(s) 788, 1326, 1498
BstSCI CCNGG 1 cut(s) 1943
BstSFI CTRYAG 2 cut(s) 338, 1371
BstUI CGCG 2 cut(s) 1127, 1875
BstV1I GCAGC 4 cut(s) 784, 1261, 1357, 1735
BstX2I RGATCY 1 cut(s) 1086
BstYI RGATCY 1 cut(s) 1086
BstZ17I GTATAC 1 cut(s) 1428
BsuRI GGCC 1 cut(s) 810
BtgZI GCGATG 1 cut(s) 1465
BtrI CACGTC 1 cut(s) 894
BtsCI GGATG 8 cut(s) 651, 784, 1234, 1294, 1395, 1552, 1869, 1981
BtsI GCAGTG 1 cut(s) 940
BtsIMutI CAGTG 5 cut(s) 420, 527, 940, 1569, 1737
Cac8I GCNNGC 6 cut(s) 329, 394, 1463, 1560, 1564, 1877
CciI TCATGA 1 cut(s) 915
Cfr13I GGNCC 3 cut(s) 223, 259, 443
CseI GACGC 1 cut(s) 394
CspCI CAANNNNNGTGG 4 cut(s) 1674, 1709, 1782, 1817
DdeI CTNAG 8 cut(s) 113, 133, 1173, 1254, 1385, 1572, 1626, 1961
DpnI GATC 3 cut(s) 885, 1088, 1859
DpnII GATC 3 cut(s) 883, 1086, 1857
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 6 cut(s) 12, 213, 249, 361, 1037, 1650
EarI CTCTTC 6 cut(s) 12, 213, 249, 361, 1037, 1650
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 677
Eco47I GGWCC 3 cut(s) 223, 259, 443
Eco57I CTGAAG 3 cut(s) 267, 1061, 1179
Eco72I CACGTG 1 cut(s) 1769
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 1943
EcoT14I CCWWGG 1 cut(s) 677
EcoT22I ATGCAT 6 cut(s) 949, 1234, 1381, 1447, 1552, 1762
ErhI CCWWGG 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 848
FaqI GGGAC 3 cut(s) 965, 1395, 1636
FauNDI CATATG 1 cut(s) 1762
FblI GTMKAC 1 cut(s) 1427
Fnu4HI GCNGC 7 cut(s) 38, 352, 515, 798, 1250, 1371, 1724
FokI GGATG 8 cut(s) 658, 791, 1241, 1301, 1402, 1559, 1856, 1988
Fsp4HI GCNGC 7 cut(s) 38, 352, 515, 798, 1250, 1371, 1724
FspBI CTAG 2 cut(s) 504, 678
GluI GCNGC 7 cut(s) 38, 352, 515, 798, 1250, 1371, 1724
HaeIII GGCC 1 cut(s) 810
HapII CCGG 3 cut(s) 402, 446, 881
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 405
HincII GTYRAC 2 cut(s) 409, 2131
HindII GTYRAC 2 cut(s) 409, 2131
HindIII AAGCTT 3 cut(s) 1268, 1473, 1958
HinfI GANTC 6 cut(s) 282, 398, 449, 455, 991, 1835
HpaI GTTAAC 1 cut(s) 2131
HpaII CCGG 3 cut(s) 402, 446, 881
HphI GGTGA 3 cut(s) 156, 614, 1642
Hpy166II GTNNAC 3 cut(s) 409, 1428, 2131
Hpy188I TCNGA 7 cut(s) 281, 297, 454, 472, 1224, 1386, 1702
Hpy188III TCNNGA 8 cut(s) 446, 881, 916, 995, 1649, 1679, 1890, 2086
Hpy8I GTNNAC 3 cut(s) 409, 1428, 2131
HpyCH4III ACNGT 3 cut(s) 56, 1238, 1732
HpyCH4IV ACGT 3 cut(s) 118, 893, 1768
HpyF10VI GCNNNNNNNGC 7 cut(s) 337, 402, 816, 944, 1376, 1481, 2123
HpyF3I CTNAG 8 cut(s) 113, 133, 1173, 1254, 1385, 1572, 1626, 1961
HpySE526I ACGT 3 cut(s) 118, 893, 1768
Hsp92I GRCGYC 1 cut(s) 405
Kpn2I TCCGGA 2 cut(s) 445, 880
KspAI GTTAAC 1 cut(s) 2131
Kzo9I GATC 3 cut(s) 883, 1086, 1857
LguI GCTCTTC 2 cut(s) 12, 361
LmnI GCTCC 5 cut(s) 27, 142, 164, 658, 1300
Lsp1109I GCAGC 4 cut(s) 784, 1261, 1357, 1735
LweI GCATC 6 cut(s) 826, 934, 1219, 1366, 1537, 1930
MaeI CTAG 2 cut(s) 504, 678
MaeII ACGT 3 cut(s) 118, 893, 1768
MaeIII GTNAC 6 cut(s) 56, 670, 889, 1361, 1630, 1840
MalI GATC 3 cut(s) 885, 1088, 1859
MbiI CCGCTC 1 cut(s) 354
MboI GATC 3 cut(s) 883, 1086, 1857
MfeI CAATTG 2 cut(s) 273, 985
MflI RGATCY 1 cut(s) 1086
MhlI GDGCHC 3 cut(s) 102, 821, 1012
MluI ACGCGT 1 cut(s) 1125
MlyI GAGTC 2 cut(s) 1000, 1829
MmeI TCCRAC 1 cut(s) 463
Mph1103I ATGCAT 6 cut(s) 949, 1234, 1381, 1447, 1552, 1762
MroI TCCGGA 2 cut(s) 445, 880
MroXI GAANNNNTTC 1 cut(s) 770
MslI CAYNNNNRTG 2 cut(s) 1574, 1874
MspA1I CMGCKG 1 cut(s) 1798
MspI CCGG 3 cut(s) 402, 446, 881
MspR9I CCNGG 1 cut(s) 1945
MunI CAATTG 2 cut(s) 273, 985
Mva1269I GAATGC 2 cut(s) 1251, 1762
MvaI CCWGG 1 cut(s) 1945
MvnI CGCG 2 cut(s) 1127, 1875
MwoI GCNNNNNNNGC 7 cut(s) 337, 402, 816, 944, 1376, 1481, 2123
NdeI CATATG 1 cut(s) 1762
NdeII GATC 3 cut(s) 883, 1086, 1857
NlaIV GGNNCC 4 cut(s) 261, 444, 660, 1302
NmuCI GTSAC 4 cut(s) 56, 889, 1361, 1630
NsiI ATGCAT 6 cut(s) 949, 1234, 1381, 1447, 1552, 1762
NspI RCATGY 3 cut(s) 788, 1326, 1498
PagI TCATGA 1 cut(s) 915
PciI ACATGT 1 cut(s) 1322
PciSI GCTCTTC 2 cut(s) 12, 361
PctI GAATGC 2 cut(s) 1251, 1762
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 4 cut(s) 282, 398, 449, 455
PkrI GCNGC 7 cut(s) 39, 353, 516, 799, 1251, 1372, 1725
PleI GAGTC 2 cut(s) 999, 1829
PmaCI CACGTG 1 cut(s) 1769
PmlI CACGTG 1 cut(s) 1769
PpsI GAGTC 2 cut(s) 999, 1829
Ppu21I YACGTR 1 cut(s) 1769
PpuMI RGGWCCY 1 cut(s) 259
PscI ACATGT 1 cut(s) 1322
PshBI ATTAAT 1 cut(s) 2031
PsiI TTATAA 2 cut(s) 792, 1016
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 1943
PspCI CACGTG 1 cut(s) 1769
PspGI CCWGG 1 cut(s) 1943
PspN4I GGNNCC 4 cut(s) 261, 444, 660, 1302
PspPI GGNCC 3 cut(s) 223, 259, 443
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 2 cut(s) 342, 1375
PsuI RGATCY 1 cut(s) 1086
PvuII CAGCTG 1 cut(s) 1798
RseI CAYNNNNRTG 2 cut(s) 1574, 1874
SapI GCTCTTC 2 cut(s) 12, 361
SatI GCNGC 7 cut(s) 38, 352, 515, 798, 1250, 1371, 1724
Sau3AI GATC 3 cut(s) 883, 1086, 1857
Sau96I GGNCC 3 cut(s) 223, 259, 443
SchI GAGTC 2 cut(s) 1000, 1829
ScrFI CCNGG 1 cut(s) 1945
SduI GDGCHC 3 cut(s) 102, 821, 1012
SfaNI GCATC 6 cut(s) 826, 934, 1219, 1366, 1537, 1930
SfcI CTRYAG 2 cut(s) 338, 1371
SinI GGWCC 3 cut(s) 223, 259, 443
SmiMI CAYNNNNRTG 2 cut(s) 1574, 1874
SmlI CTYRAG 1 cut(s) 1888
SmoI CTYRAG 1 cut(s) 1888
SsiI CCGC 7 cut(s) 25, 38, 349, 352, 390, 515, 1873
SspI AATATT 1 cut(s) 1219
SspMI CTAG 2 cut(s) 504, 678
StyD4I CCNGG 1 cut(s) 1943
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 3 cut(s) 56, 1238, 1732
TaiI ACGT 3 cut(s) 121, 896, 1771
TaqI TCGA 1 cut(s) 899
TauI GCSGC 3 cut(s) 40, 354, 517
TfiI GAWTC 4 cut(s) 282, 398, 449, 455
TscAI CASTG 5 cut(s) 420, 534, 940, 1576, 1737
TseFI GTSAC 4 cut(s) 56, 889, 1361, 1630
TseI GCWGC 4 cut(s) 797, 1249, 1370, 1723
Tsp45I GTSAC 4 cut(s) 56, 889, 1361, 1630
TspDTI ATGAA 8 cut(s) 243, 255, 846, 983, 1136, 1193, 1406, 1769
TspRI CASTG 5 cut(s) 420, 534, 940, 1576, 1737
VpaK11BI GGWCC 3 cut(s) 223, 259, 443
VspI ATTAAT 1 cut(s) 2031
XapI RAATTY 2 cut(s) 1587, 1703
XceI RCATGY 3 cut(s) 788, 1326, 1498
XmaJI CCTAGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 1427
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 2 cut(s) 504, 678
Zsp2I ATGCAT 6 cut(s) 949, 1234, 1381, 1447, 1552, 1762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.