Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8381307.1

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1006

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8381307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ctgaagtttgtttccaacgccactgacttcccatcggaggactactatgactacattatcgtgggaggtggcactgctgggtgccctttggctgcgactctgtcaaccaggtttcgggtcctcctgctggaaagaggtggtgttgcttatggcaatcgaaacttgatgacccaggaaggtttcttggccacactcatggatgtcaacaccattgactctccgacacaagctttcacatctgaagatggtgttccaaatgtccgaggacgcattcttggaggcagcagtgccataaatgctggtttctatagccgtgcagatcacgaattctacaaaaggtccactttcaaatgggatcttaaagtggtgaatgagtcctatgagtgggttgaaagagcaattgtcttcaggcctgagcttaggaattggcagtcagcagttcgagatggcttattgcaagctggtattgatccctataatgggtatagttttgatcatgtagtggggaccaagactggtggttcaacatttgatactttgggaaggagacacagtgctgctgaccttcttaaatatgcaaagccattgaatattcgagttgcagtgcatgccactgtggaaaaagttctgttggcttcatctacttcatctccagtgtcgaggcaatctgctgttggagttatttttcgtgacagaagtgggaggtatcaccatgctatgctacgaaaacatggagaggtccttctctcagctggtgcaattgggactccacagctacttcttctgagtggtattggcccaaggccttatcttgcatcttgggggattccagtggctcatcatcttccttatgttgggcagtttatgtttgataatcccagaaatggcatctcaatagtgccaccaattccactggagcactcactcattcaagtggttggcattactgaatcaggggcttacattgaatcagcctccactgtcatccaatttgcatccccagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

335

Amino Acids

36.5

Weight (kDa)

8.57

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	363, 464
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	3 cut(s)	23, 261, 391
AfiI	CCNNNNNNNGG	8 cut(s)	37, 114, 127, 384, 479, 480, 854, 884
AgsI	TTSAA	6 cut(s)	349, 392, 525, 589, 932, 968
AjnI	CCWGG	2 cut(s)	107, 171
AluBI	AGCT	5 cut(s)	230, 418, 461, 752, 775
AluI	AGCT	5 cut(s)	230, 418, 461, 752, 775
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	363, 464
AoxI	GGCC	4 cut(s)	186, 410, 796, 803
ApeKI	GCWGC	3 cut(s)	92, 282, 557
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	624
AspS9I	GGNCC	5 cut(s)	118, 339, 507, 739, 797
AsuHPI	GGTGA	2 cut(s)	379, 701
AvaII	GGWCC	4 cut(s)	118, 339, 507, 739
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	3 cut(s)	79, 294, 544
BccI	CCATC	3 cut(s)	40, 239, 440
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	2 cut(s)	109, 173
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	541
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	3 cut(s)	93, 283, 558
BlsI	GCNGC	3 cut(s)	94, 284, 559
Bme1390I	CCNGG	2 cut(s)	109, 173
Bme18I	GGWCC	4 cut(s)	118, 339, 507, 739
BmgT120I	GGNCC	5 cut(s)	118, 339, 507, 739, 797
BmiI	GGNNCC	3 cut(s)	83, 119, 508
BmrFI	CCNGG	2 cut(s)	109, 173
BmsI	GCATC	2 cut(s)	824, 897
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	2 cut(s)	636, 935
Bpu10I	CCTNAGC	2 cut(s)	414, 419
BsaJI	CCNNGG	3 cut(s)	171, 262, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	538, 568, 634, 664
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 114, 127, 384, 479, 480, 854, 884
Bse1I	ACTGG	4 cut(s)	520, 653, 830, 918
BseBI	CCWGG	2 cut(s)	109, 173
BseDI	CCNNGG	3 cut(s)	171, 262, 800
BseGI	GGATG	3 cut(s)	205, 984, 995
BseLI	CCNNNNNNNGG	8 cut(s)	37, 114, 127, 384, 479, 480, 854, 884
BseMII	CTCAG	3 cut(s)	405, 762, 776
BseNI	ACTGG	4 cut(s)	520, 653, 830, 918
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	79, 294, 544
BseYI	CCCAGC	2 cut(s)	77, 1000
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	4 cut(s)	188, 412, 798, 805
BshNI	GGYRCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	921
BslFI	GGGAC	2 cut(s)	520, 778
BslI	CCNNNNNNNGG	8 cut(s)	37, 114, 127, 384, 479, 480, 854, 884
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	2 cut(s)	520, 778
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	4 cut(s)	188, 412, 798, 805
Bsp1286I	GDGCHC	2 cut(s)	86, 921
Bsp143I	GATC	4 cut(s)	319, 355, 469, 493
BspANI	GGCC	4 cut(s)	188, 412, 798, 805
BspCNI	CTCAG	3 cut(s)	406, 761, 777
BspLI	GGNNCC	3 cut(s)	83, 119, 508
BspPI	GGATC	2 cut(s)	363, 464
BspT107I	GGYRCC	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	520, 653, 830, 918
BssECI	CCNNGG	3 cut(s)	171, 262, 800
BssMI	GATC	4 cut(s)	319, 355, 469, 493
BssT1I	CCWWGG	1 cut(s)	800
Bst2UI	CCWGG	2 cut(s)	109, 173
Bst4CI	ACNGT	3 cut(s)	554, 616, 982
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	459, 609
BstDEI	CTNAG	4 cut(s)	414, 419, 748, 785
BstF5I	GGATG	3 cut(s)	205, 984, 995
BstKTI	GATC	4 cut(s)	322, 358, 472, 496
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	4 cut(s)	319, 355, 469, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 608, 1001
BstNI	CCWGG	2 cut(s)	109, 173
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	107, 171
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	79, 294, 544
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	188, 412, 798, 805
BtsCI	GGATG	3 cut(s)	205, 984, 995
BtsI	GCAGTG	3 cut(s)	72, 292, 609
Cac8I	GCNNGC	2 cut(s)	459, 609
Cfr13I	GGNCC	5 cut(s)	118, 339, 507, 739, 797
CseI	GACGC	1 cut(s)	276
CsiI	ACCWGGT	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	5 cut(s)	196, 497, 608, 713, 731
DdeI	CTNAG	4 cut(s)	414, 419, 748, 785
DpnI	GATC	4 cut(s)	321, 357, 471, 495
DpnII	GATC	4 cut(s)	319, 355, 469, 493
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	800
Eco147I	AGGCCT	2 cut(s)	412, 805
Eco47I	GGWCC	4 cut(s)	118, 339, 507, 739
Eco57I	CTGAAG	3 cut(s)	23, 261, 391
EcoO109I	RGGNCCY	2 cut(s)	118, 739
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	107, 171
EcoT14I	CCWWGG	1 cut(s)	800
ErhI	CCWWGG	1 cut(s)	800
FaeI	CATG	5 cut(s)	199, 500, 611, 716, 734
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FaqI	GGGAC	2 cut(s)	520, 778
FatI	CATG	5 cut(s)	195, 496, 607, 712, 730
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	93, 283, 558
FokI	GGATG	3 cut(s)	212, 971, 982
Fsp4HI	GCNGC	3 cut(s)	93, 283, 558
GluI	GCNGC	3 cut(s)	93, 283, 558
GsaI	CCCAGC	2 cut(s)	81, 1004
GsuI	CTGGAG	2 cut(s)	636, 935
HaeIII	GGCC	4 cut(s)	188, 412, 798, 805
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	199, 500, 611, 716, 734
HincII	GTYRAC	2 cut(s)	105, 205
HindII	GTYRAC	2 cut(s)	105, 205
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	7 cut(s)	97, 215, 374, 766, 826, 950, 968
HphI	GGTGA	2 cut(s)	379, 701
Hpy166II	GTNNAC	3 cut(s)	105, 205, 342
Hpy188I	TCNGA	5 cut(s)	37, 222, 241, 263, 786
Hpy188III	TCNNGA	3 cut(s)	323, 443, 689
Hpy8I	GTNNAC	3 cut(s)	105, 205, 342
HpyAV	CCTTC	4 cut(s)	170, 537, 575, 752
HpyCH4III	ACNGT	3 cut(s)	554, 616, 982
HpyCH4V	TGCA	8 cut(s)	317, 457, 578, 602, 607, 758, 815, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 608, 1001
HpyF3I	CTNAG	4 cut(s)	414, 419, 748, 785
Hsp92II	CATG	5 cut(s)	199, 500, 611, 716, 734
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	319, 355, 469, 493
LmnI	GCTCC	1 cut(s)	916
Lsp1109I	GCAGC	3 cut(s)	79, 294, 544
LweI	GCATC	2 cut(s)	824, 897
MabI	ACCWGGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	4 cut(s)	321, 357, 471, 495
MboI	GATC	4 cut(s)	319, 355, 469, 493
MboII	GAAGA	4 cut(s)	254, 397, 773, 836
MfeI	CAATTG	2 cut(s)	399, 759
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	86, 921
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	326, 399, 424, 759, 906, 989
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	4 cut(s)	91, 209, 383, 760
MmeI	TCCRAC	3 cut(s)	39, 245, 655
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	360, 570
MslI	CAYNNNNRTG	3 cut(s)	59, 194, 932
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	752
MspR9I	CCNGG	2 cut(s)	109, 173
MunI	CAATTG	2 cut(s)	399, 759
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	2 cut(s)	109, 173
MwoI	GCNNNNNNNGC	3 cut(s)	296, 608, 1001
NdeII	GATC	4 cut(s)	319, 355, 469, 493
NlaIII	CATG	5 cut(s)	199, 500, 611, 716, 734
NlaIV	GGNNCC	3 cut(s)	83, 119, 508
NmuCI	GTSAC	1 cut(s)	689
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PceI	AGGCCT	2 cut(s)	412, 805
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	826, 950, 968
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	94, 284, 559
PleI	GAGTC	4 cut(s)	91, 209, 382, 760
PpsI	GAGTC	4 cut(s)	91, 209, 382, 760
PpuMI	RGGWCCY	2 cut(s)	118, 739
Psp5II	RGGWCCY	2 cut(s)	118, 739
Psp6I	CCWGG	2 cut(s)	107, 171
PspFI	CCCAGC	2 cut(s)	77, 1000
PspGI	CCWGG	2 cut(s)	107, 171
PspN4I	GGNNCC	3 cut(s)	83, 119, 508
PspPI	GGNCC	5 cut(s)	118, 339, 507, 739, 797
PspPPI	RGGWCCY	2 cut(s)	118, 739
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	752
RseI	CAYNNNNRTG	3 cut(s)	59, 194, 932
SaqAI	TTAA	2 cut(s)	360, 570
SatI	GCNGC	3 cut(s)	93, 283, 558
Sau3AI	GATC	4 cut(s)	319, 355, 469, 493
Sau96I	GGNCC	5 cut(s)	118, 339, 507, 739, 797
SchI	GAGTC	4 cut(s)	91, 209, 383, 760
ScrFI	CCNGG	2 cut(s)	109, 173
SduI	GDGCHC	2 cut(s)	86, 921
SexAI	ACCWGGT	1 cut(s)	107
SfaNI	GCATC	2 cut(s)	824, 897
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	4 cut(s)	118, 339, 507, 739
SmiMI	CAYNNNNRTG	3 cut(s)	59, 194, 932
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	6 cut(s)	326, 399, 424, 759, 906, 989
SseBI	AGGCCT	2 cut(s)	412, 805
SspI	AATATT	1 cut(s)	592
StuI	AGGCCT	2 cut(s)	412, 805
StyD4I	CCNGG	2 cut(s)	107, 171
StyI	CCWWGG	1 cut(s)	800
TaaI	ACNGT	3 cut(s)	554, 616, 982
TaqI	TCGA	4 cut(s)	157, 442, 595, 659
TasI	AATT	6 cut(s)	326, 399, 424, 759, 906, 989
TfiI	GAWTC	3 cut(s)	826, 950, 968
Tru1I	TTAA	2 cut(s)	360, 570
Tru9I	TTAA	2 cut(s)	360, 570
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	3 cut(s)	92, 282, 557
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	2 cut(s)	627, 636
Tth111I	GACNNNGTC	1 cut(s)	100
VpaK11BI	GGWCC	4 cut(s)	118, 339, 507, 739
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.