Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003877

Physical Location & Seq

Genomic Coordinates Forward (+)

8674795 .. 8680654

Gene Structure 5860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCGTCGTTGCTTCTTCAAGGCTATCGTCTCGGAACCCACGCCGGCGTTGTCAAGTGGAGGTGGCACTGCTGGGTGCCCTTTGGCTGCGACACTATCATCCAGTTTTCGGGTCCTTCTGCTCAAAAGAGGTGTTGCTTATGGCAATCAAAACTTGATGACCCAGGATGGTTTCTGTCAGCACTCATGGATGTCAATGCCTTTGACTTTCTGACACAAGCCTTCACATCTGAAGATGGTGTTCCAAATGTCCGAGGACGCATTCTTGGAGGCAGCAGGGCCATGAATGCTGGTTTCTATAGCCCCGCAGATCAGGAGTTCTTCGAAAGATCCACTTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

114

Amino Acids

12.85

Weight (kDa)

6.7

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50280
fragaria_vesca	FvH4_5g07010 FvH4_5g07010
malus_domestica	MD06G1160200.v1.1
prunus_persica	Prupe.5G160200_v2.0.a1
pyrus_communis	pycom06g14320
rosa_chinensis	RchiOBHm_Chr2g0103631 RchiOBHm_Chr7g0191671
rosa_laevigata	RLG00000004435 RLG00000016595 RLG00000030786
rosa_multiflora	Rmu_co8329853.1_g000001 Rmu_co8381307.1_g000001 Rmu_sc0001123.1_g000010 Rmu_sc0001530.1_g000019 Rmu_sc0001852.1_g000012 Rmu_sc0018746.1_g000006
rosa_roxburghii	Rroxscaffold_157G00438490 Rroxscaffold_3G00263660
rosa_rugosa	Rorug02G0116400 Rorug06G0510800
rosa_samantha	Rh2AG102000 Rh2BG023000 Rh2DG103300 Rh2DG170000 Rh3CG338800 Rh6BG097500 Rh7AG119800 Rh7AG120000 Rh7BG122100 Rh7BG214500 Rh7CG124700 Rh7DG122900
rosa_wichuraiana	Rw7G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	20, 340
AjnI	CCWGG	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	87, 273
AspS9I	GGNCC	2 cut(s)	113, 279
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	74, 285
BccI	CCATC	2 cut(s)	162, 230
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	2 cut(s)	88, 274
BlsI	GCNGC	2 cut(s)	89, 275
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 279
BmiI	GGNNCC	3 cut(s)	37, 78, 114
BmrFI	CCNGG	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	163, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	163, 253
BseGI	GGATG	3 cut(s)	99, 173, 196
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	74, 285
BseYI	CCCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmI	GAATGC	2 cut(s)	261, 292
BsnI	GGCC	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	310, 329
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	37, 78, 114
BspPI	GGATC	1 cut(s)	324
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	163, 253
BssMI	GATC	2 cut(s)	310, 329
Bst2UI	CCWGG	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	99, 173, 196
BstKTI	GATC	2 cut(s)	313, 332
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	310, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	74, 285
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	3 cut(s)	99, 173, 196
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	113, 279
CseI	GACGC	1 cut(s)	267
CviAII	CATG	2 cut(s)	187, 283
CviJI	RGCY	5 cut(s)	24, 87, 221, 281, 303
CviKI_1	RGCY	5 cut(s)	24, 87, 221, 281, 303
DpnI	GATC	2 cut(s)	312, 331
DpnII	GATC	2 cut(s)	310, 329
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	190, 286
FaiI	YATR	4 cut(s)	142, 188, 284, 300
FalI	AAGNNNNNCTT	1 cut(s)	319
FatI	CATG	2 cut(s)	186, 282
FauI	CCCGC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	88, 274
FokI	GGATG	3 cut(s)	86, 180, 203
Fsp4HI	GCNGC	2 cut(s)	88, 274
GluI	GCNGC	2 cut(s)	88, 274
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	190, 286
HpaII	CCGG	1 cut(s)	45
Hpy188I	TCNGA	4 cut(s)	35, 213, 232, 254
Hpy188III	TCNNGA	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	126, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	190, 286
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	310, 329
LpnPI	CCDG	8 cut(s)	58, 58, 116, 150, 177, 262, 276, 299
Lsp1109I	GCAGC	2 cut(s)	74, 285
MalI	GATC	2 cut(s)	312, 331
MboI	GATC	2 cut(s)	310, 329
MboII	GAAGA	3 cut(s)	8, 245, 313
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	4 cut(s)	54, 123, 248, 263
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	44
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	340
Mva1269I	GAATGC	2 cut(s)	261, 292
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	287
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	310, 329
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	190, 286
NlaIV	GGNNCC	3 cut(s)	37, 78, 114
NspV	TTCGAA	1 cut(s)	324
PctI	GAATGC	2 cut(s)	261, 292
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	89, 275
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	37, 78, 114
PspPI	GGNCC	2 cut(s)	113, 279
PspPPI	RGGWCCY	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	329
SatI	GCNGC	2 cut(s)	88, 274
Sau3AI	GATC	2 cut(s)	310, 329
Sau96I	GGNCC	2 cut(s)	113, 279
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	2 cut(s)	65, 134
SfcI	CTRYAG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	324
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	163
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	340
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	2 cut(s)	87, 273
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.