Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Reverse (-)

29614841 .. 29618816

Gene Structure 3976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G344800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCCCCTGACGCTTCAGCTGCCCTTGCAGTGAGGGATAAAGTTCAACAATTTCTCAATGCTGCTGTTACTGGGAATCTTGATCTCTTAAAGAATTTGGCCGGGCAACTTGATGAAGGGAAGGATTTGGCAAAAACTGTGGCTGATATTAAGGATGCCAACAAGCGAGGGGCCCTTCATTTTGCGGCGAGAGAGGGCAAGACTGAGGTGTGCAAGTACTTGCTGGAGGAACTGAAGCTTGATGTTGATACAAAGGACGAAGACGGTGAGACTGCTCTTATTCATGCTGCTCGGCAAGGCCATACTGATACTGCAAAATACCTGCTTGATTCTGGTGCCAATCCTGCTATAGCCAGTGATTTAGGGGCCACGGCTCTTCATCATTCCGCTGGACTAGGAGACATTGAGTTACTGAGGTATTTGATCTCCAAAGGTGCTGATGTTAATTCCCAAAGTGAAGCTGGCACTCCTTTGATTTGGGCTGCTGGTCATGGTCAACAAGATGCTGTGAAAGTTTTGTTAGAACACCATGCCAATCCAAATTCTGAAAATGATGACAGTATTACTCCTTTGTTATCTTCTGTTGCGGCTGGTTCACTGCCATGCTTAGAGTTATTGATTCAGGCTGGTGCCAAAGTAAATATTAGTGCAGGTGGAGCAACCCCTTTGCACATTGCTGCTGATATTGGCAGCCCAGAGATCTTACAATTATTGTTGAAAGCTGGAGCAGATCCCAATATCACTGATGAGGATGGTTTGAAGCCTATACAGGTCGCAGCTGCAAGGGGGAACCGCAGTGCTGTTGAGATTCTCTTTCCCTTGACATCAAAGCTTGAAACCATCCCAAAATGGACGGTTGACGGCATACTTGAGTATATGCAGTCTGAAACAAGCAGACAACAGGAACAAGCTAGAAACTTGAAGGAACTTAATGTGCCAAAAGACTCTACATCACCAAAACAAGAGCTCCCGGAGGTGGTGACCCCTGAAGCGAAGAAGAAAGCTGCAGAAGCAAAATCAAGAGGAGATGATGCTTTCAAAACAAAGGATTATAATATGGCCATTGATGCATATACACAGGCAATTGATATGGACCCGACCGATGGTACTTTGTTTTCTAATCGAAGCCTTTGTTGGATGCGTCTTGGTCAACCTGAGTATGCCTTAGCTGATGCAAAGGCCTGCAGGGCATTAAAACCAGATTGGGCAAAAGCTTGCTACCGAGAAGGTGCAGCATTGCGCCTATTGCAGAAGTTTGATGAAGCTGCGAATTCTTTTTATGAAGGTGTCAGGCTGGACCCTGAAAATCAGGCACTTGTAGATGCTTTCAGAGAAGCGGTTGAAGCTGGAAGGAAATTTCATGGTGCTGATAAACGGAAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

462

Amino Acids

49.55

Weight (kDa)

5.19

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1053
AarI	CACCTGC	1 cut(s)	641
Acc36I	ACCTGC	2 cut(s)	330, 641
AccB1I	GGYRCC	2 cut(s)	335, 629
AciI	CCGC	5 cut(s)	185, 387, 587, 793, 1337
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	2 cut(s)	99, 1059
AcsI	RAATTY	4 cut(s)	94, 541, 1270, 1355
AcuI	CTGAAG	2 cut(s)	254, 1008
AfaI	GTAC	2 cut(s)	218, 1108
AfiI	CCNNNNNNNGG	2 cut(s)	976, 1103
AgsI	TTSAA	7 cut(s)	47, 718, 760, 836, 922, 1039, 1343
AjuI	GAANNNNNNNTTGG	2 cut(s)	1117, 1149
Alw21I	GWGCWC	1 cut(s)	969
Alw26I	GTCTC	2 cut(s)	263, 393
AlwI	GGATC	1 cut(s)	725
AoxI	GGCC	7 cut(s)	3, 99, 171, 298, 366, 1059, 1179
ApaI	GGGCCC	1 cut(s)	175
ApoI	RAATTY	4 cut(s)	94, 541, 1270, 1355
AspLEI	GCGC	1 cut(s)	1242
AspS9I	GGNCC	6 cut(s)	4, 171, 172, 366, 1093, 1297
AsuC2I	CCSGG	2 cut(s)	103, 971
AsuHPI	GGTGA	3 cut(s)	278, 945, 991
AvaII	GGWCC	2 cut(s)	1093, 1297
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	1061
BanI	GGYRCC	2 cut(s)	335, 629
BanII	GRGCYC	2 cut(s)	175, 969
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	969
BccI	CCATC	3 cut(s)	746, 848, 1097
BceAI	ACGGC	2 cut(s)	387, 877
BcnI	CCSGG	2 cut(s)	103, 971
BcoDI	GTCTC	2 cut(s)	263, 393
BfaI	CTAG	2 cut(s)	395, 912
BfmI	CTRYAG	3 cut(s)	348, 1005, 1183
BfuAI	ACCTGC	2 cut(s)	330, 641
BglI	GCCNNNNNGGC	1 cut(s)	1187
BglII	AGATCT	1 cut(s)	699
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	103, 971
Bme18I	GGWCC	2 cut(s)	1093, 1297
BmgT120I	GGNCC	6 cut(s)	4, 171, 172, 366, 1093, 1297
BmiI	GGNNCC	9 cut(s)	6, 172, 173, 337, 367, 631, 791, 1095, 1299
BmrFI	CCNGG	2 cut(s)	103, 971
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	7 cut(s)	145, 493, 1021, 1057, 1128, 1162, 1312
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	2 cut(s)	245, 744
Bpu10I	CCTNAGC	1 cut(s)	1165
BpuEI	CTTGAG	1 cut(s)	890
BpuMI	CCSGG	2 cut(s)	103, 971
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	951, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	976, 1103
Bse1I	ACTGG	2 cut(s)	76, 354
Bse3DI	GCAATG	2 cut(s)	672, 1235
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	4 cut(s)	160, 757, 840, 1143
BseLI	CCNNNNNNNGG	2 cut(s)	976, 1103
BseMI	GCAATG	2 cut(s)	672, 1235
BseMII	CTCAG	3 cut(s)	195, 404, 1146
BseNI	ACTGG	2 cut(s)	76, 354
BseRI	GAGGAG	1 cut(s)	1038
BseSI	GKGCMC	1 cut(s)	175
BsgI	GTGCAG	2 cut(s)	669, 1251
Bsh1285I	CGRYCG	1 cut(s)	1101
BshFI	GGCC	7 cut(s)	5, 101, 173, 300, 368, 1061, 1181
BshNI	GGYRCC	2 cut(s)	335, 629
BsiEI	CGRYCG	1 cut(s)	1101
BsiHKAI	GWGCWC	1 cut(s)	969
BsiSI	CCGG	2 cut(s)	102, 971
BslI	CCNNNNNNNGG	2 cut(s)	976, 1103
BsmAI	GTCTC	2 cut(s)	263, 393
BsnI	GGCC	7 cut(s)	5, 101, 173, 300, 368, 1061, 1181
Bsp120I	GGGCCC	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	175, 969
Bsp143I	GATC	4 cut(s)	82, 423, 699, 730
BspACI	CCGC	5 cut(s)	185, 387, 587, 793, 1337
BspANI	GGCC	7 cut(s)	5, 101, 173, 300, 368, 1061, 1181
BspCNI	CTCAG	3 cut(s)	196, 405, 1147
BspLI	GGNNCC	9 cut(s)	6, 172, 173, 337, 367, 631, 791, 1095, 1299
BspMAI	CTGCAG	2 cut(s)	1009, 1187
BspMI	ACCTGC	2 cut(s)	330, 641
BspPI	GGATC	1 cut(s)	725
BspQI	GCTCTTC	1 cut(s)	381
BspT107I	GGYRCC	2 cut(s)	335, 629
BsrDI	GCAATG	2 cut(s)	672, 1235
BsrI	ACTGG	2 cut(s)	76, 354
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	82, 423, 699, 730
Bst4CI	ACNGT	4 cut(s)	139, 266, 560, 856
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	463, 1183, 1216
BstDEI	CTNAG	5 cut(s)	204, 413, 607, 1155, 1165
BstDSI	CCRYGG	1 cut(s)	369
BstEII	GGTNACC	1 cut(s)	979
BstF5I	GGATG	4 cut(s)	160, 757, 840, 1143
BstHHI	GCGC	1 cut(s)	1242
BstKTI	GATC	4 cut(s)	85, 426, 702, 733
BstMAI	GTCTC	2 cut(s)	263, 393
BstMBI	GATC	4 cut(s)	82, 423, 699, 730
BstMCI	CGRYCG	1 cut(s)	1101
BstPI	GGTNACC	1 cut(s)	979
BstSCI	CCNGG	2 cut(s)	101, 969
BstSFI	CTRYAG	3 cut(s)	348, 1005, 1183
BstSLI	GKGCMC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	699, 730
BstYI	RGATCY	2 cut(s)	699, 730
BsuRI	GGCC	7 cut(s)	5, 101, 173, 300, 368, 1061, 1181
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	4 cut(s)	160, 757, 840, 1143
BtsI	GCAGTG	3 cut(s)	36, 596, 802
BtsIMutI	CAGTG	5 cut(s)	36, 361, 596, 741, 802
BveI	ACCTGC	2 cut(s)	330, 641
Cac8I	GCNNGC	3 cut(s)	463, 1183, 1216
CfoI	GCGC	1 cut(s)	1242
Cfr13I	GGNCC	6 cut(s)	4, 171, 172, 366, 1093, 1297
CseI	GACGC	2 cut(s)	20, 1130
Csp6I	GTAC	2 cut(s)	217, 1107
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	5 cut(s)	284, 491, 530, 603, 1361
CviQI	GTAC	2 cut(s)	217, 1107
DdeI	CTNAG	5 cut(s)	204, 413, 607, 1155, 1165
DpnI	GATC	4 cut(s)	84, 425, 701, 732
DpnII	GATC	4 cut(s)	82, 423, 699, 730
EaeI	YGGCCR	2 cut(s)	99, 1059
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	967
Eco147I	AGGCCT	1 cut(s)	1181
Eco24I	GRGCYC	2 cut(s)	175, 969
Eco47I	GGWCC	2 cut(s)	1093, 1297
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	2 cut(s)	254, 1008
Eco91I	GGTNACC	1 cut(s)	979
EcoICRI	GAGCTC	1 cut(s)	967
EcoO109I	RGGNCCY	2 cut(s)	171, 172
EcoO65I	GGTNACC	1 cut(s)	979
EcoRI	GAATTC	1 cut(s)	1270
EcoT22I	ATGCAT	1 cut(s)	1072
EcoT38I	GRGCYC	2 cut(s)	175, 969
FaeI	CATG	5 cut(s)	287, 494, 533, 606, 1364
FatI	CATG	5 cut(s)	283, 490, 529, 602, 1360
FokI	GGATG	4 cut(s)	167, 764, 827, 1150
FriOI	GRGCYC	2 cut(s)	175, 969
FspBI	CTAG	2 cut(s)	395, 912
GlaI	GCGC	1 cut(s)	1241
GsuI	CTGGAG	2 cut(s)	245, 744
HaeIII	GGCC	7 cut(s)	5, 101, 173, 300, 368, 1061, 1181
HapII	CCGG	2 cut(s)	102, 971
HgaI	GACGC	2 cut(s)	20, 1130
HhaI	GCGC	1 cut(s)	1242
Hin1II	CATG	5 cut(s)	287, 494, 533, 606, 1364
Hin6I	GCGC	1 cut(s)	1240
HinP1I	GCGC	1 cut(s)	1240
HincII	GTYRAC	3 cut(s)	497, 859, 1151
HindII	GTYRAC	3 cut(s)	497, 859, 1151
HindIII	AAGCTT	3 cut(s)	236, 830, 1212
HinfI	GANTC	5 cut(s)	76, 329, 619, 808, 944
HpaII	CCGG	2 cut(s)	102, 971
HphI	GGTGA	3 cut(s)	278, 945, 991
Hpy166II	GTNNAC	4 cut(s)	497, 596, 859, 1151
Hpy188I	TCNGA	3 cut(s)	547, 886, 1331
Hpy188III	TCNNGA	2 cut(s)	80, 1020
Hpy8I	GTNNAC	4 cut(s)	497, 596, 859, 1151
HpyAV	CCTTC	7 cut(s)	110, 115, 185, 916, 1220, 1277, 1344
HpyCH4III	ACNGT	4 cut(s)	139, 266, 560, 856
HpyF3I	CTNAG	5 cut(s)	204, 413, 607, 1155, 1165
Hsp92II	CATG	5 cut(s)	287, 494, 533, 606, 1364
HspAI	GCGC	1 cut(s)	1240
Kzo9I	GATC	4 cut(s)	82, 423, 699, 730
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	656, 725, 972
LweI	GCATC	7 cut(s)	145, 493, 1021, 1057, 1128, 1162, 1312
MaeI	CTAG	2 cut(s)	395, 912
MaeIII	GTNAC	3 cut(s)	67, 408, 979
MalI	GATC	4 cut(s)	84, 425, 701, 732
MboI	GATC	4 cut(s)	82, 423, 699, 730
MboII	GAAGA	5 cut(s)	272, 368, 570, 1006, 1009
MfeI	CAATTG	1 cut(s)	1083
MflI	RGATCY	2 cut(s)	699, 730
MhlI	GDGCHC	2 cut(s)	175, 969
MlsI	TGGCCA	1 cut(s)	1061
MluCI	AATT	8 cut(s)	50, 94, 445, 541, 707, 1083, 1270, 1355
MluNI	TGGCCA	1 cut(s)	1061
MlyI	GAGTC	1 cut(s)	938
MmeI	TCCRAC	1 cut(s)	1115
MnlI	CCTC	9 cut(s)	27, 161, 187, 199, 220, 408, 742, 967, 1016
Mox20I	TGGCCA	1 cut(s)	1061
Mph1103I	ATGCAT	1 cut(s)	1072
MscI	TGGCCA	1 cut(s)	1061
MseI	TTAA	5 cut(s)	89, 150, 444, 930, 1193
MslI	CAYNNNNRTG	1 cut(s)	601
Msp20I	TGGCCA	1 cut(s)	1061
MspA1I	CMGCKG	3 cut(s)	20, 389, 779
MspI	CCGG	2 cut(s)	102, 971
MspR9I	CCNGG	2 cut(s)	103, 971
MunI	CAATTG	1 cut(s)	1083
NciI	CCSGG	2 cut(s)	103, 971
NdeII	GATC	4 cut(s)	82, 423, 699, 730
NlaIII	CATG	5 cut(s)	287, 494, 533, 606, 1364
NlaIV	GGNNCC	9 cut(s)	6, 172, 173, 337, 367, 631, 791, 1095, 1299
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	979
NsiI	ATGCAT	1 cut(s)	1072
PaqCI	CACCTGC	1 cut(s)	641
PceI	AGGCCT	1 cut(s)	1181
PciSI	GCTCTTC	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	76, 329, 619, 808
PfoI	TCCNGGA	1 cut(s)	969
PleI	GAGTC	1 cut(s)	938
PpsI	GAGTC	1 cut(s)	938
PsiI	TTATAA	1 cut(s)	1053
Psp124BI	GAGCTC	1 cut(s)	969
PspEI	GGTNACC	1 cut(s)	979
PspN4I	GGNNCC	9 cut(s)	6, 172, 173, 337, 367, 631, 791, 1095, 1299
PspOMI	GGGCCC	1 cut(s)	171
PspPI	GGNCC	6 cut(s)	4, 171, 172, 366, 1093, 1297
PstI	CTGCAG	2 cut(s)	1009, 1187
PsuI	RGATCY	2 cut(s)	699, 730
PvuII	CAGCTG	2 cut(s)	20, 779
RsaI	GTAC	2 cut(s)	218, 1108
RsaNI	GTAC	2 cut(s)	217, 1107
RseI	CAYNNNNRTG	1 cut(s)	601
SacI	GAGCTC	1 cut(s)	969
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	5 cut(s)	89, 150, 444, 930, 1193
Sau3AI	GATC	4 cut(s)	82, 423, 699, 730
Sau96I	GGNCC	6 cut(s)	4, 171, 172, 366, 1093, 1297
SbfI	CCTGCAGG	1 cut(s)	1187
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	1 cut(s)	938
ScrFI	CCNGG	2 cut(s)	103, 971
SdaI	CCTGCAGG	1 cut(s)	1187
SduI	GDGCHC	2 cut(s)	175, 969
SfaNI	GCATC	7 cut(s)	145, 493, 1021, 1057, 1128, 1162, 1312
SfcI	CTRYAG	3 cut(s)	348, 1005, 1183
SinI	GGWCC	2 cut(s)	1093, 1297
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse8387I	CCTGCAGG	1 cut(s)	1187
Sse9I	AATT	8 cut(s)	50, 94, 445, 541, 707, 1083, 1270, 1355
SseBI	AGGCCT	1 cut(s)	1181
SsiI	CCGC	5 cut(s)	185, 387, 587, 793, 1337
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	395, 912
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	1 cut(s)	1181
StyD4I	CCNGG	2 cut(s)	101, 969
TaaI	ACNGT	4 cut(s)	139, 266, 560, 856
TaqI	TCGA	1 cut(s)	1123
TaqII	GACCGA	1 cut(s)	1115
TasI	AATT	8 cut(s)	50, 94, 445, 541, 707, 1083, 1270, 1355
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	2 cut(s)	188, 590
TfiI	GAWTC	4 cut(s)	76, 329, 619, 808
Tru1I	TTAA	5 cut(s)	89, 150, 444, 930, 1193
Tru9I	TTAA	5 cut(s)	89, 150, 444, 930, 1193
TscAI	CASTG	5 cut(s)	36, 361, 603, 748, 802
TseFI	GTSAC	1 cut(s)	979
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	7 cut(s)	129, 167, 272, 368, 1275, 1296, 1349
TspRI	CASTG	5 cut(s)	36, 361, 603, 748, 802
VpaK11BI	GGWCC	2 cut(s)	1093, 1297
XapI	RAATTY	4 cut(s)	94, 541, 1270, 1355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XspI	CTAG	2 cut(s)	395, 912
ZrmI	AGTACT	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.