Rh3DG068700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002248
Physical Location & Seq
Reverse (-)
4657283 .. 4662370
5088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG068700.1

Sequence Viewer

Length: 225 bp
ATGCATGCTTGGAAGCTGACTCACCGGAATGACGGCCTTTCCGATCTTGGTTTCCTTGAGGATTCGGTCCGAGATGAGCTTGATCTTAAGCGTGAGGCTGTTCTGGTTAAGAGCGGCGTCGTCGAGCGTGAAAGTGAAGGGGGAGTGGTTCTATCTGGGGTGGGTGCCGCAGGTTTTGTGGATGGGTGTGATGAACTTGTGCTTGTCGGCTCCGCCGGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.78

Weight (kDa)

4.48

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 3 cut(s) 114, 168, 213
AcyI GRCGYC 1 cut(s) 117
AflII CTTAAG 1 cut(s) 86
AluBI AGCT 2 cut(s) 16, 79
AluI AGCT 2 cut(s) 16, 79
Alw26I GTCTC 1 cut(s) 213
AoxI GGCC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 14
AvaII GGWCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 164
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 2 cut(s) 115, 168
BlsI GCNGC 2 cut(s) 116, 169
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 166, 211
BpuEI CTTGAG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 24
BseGI GGATG 1 cut(s) 187
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 2 cut(s) 25, 216
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 43, 82
BspACI CCGC 3 cut(s) 114, 168, 213
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 166, 211
BspMI ACCTGC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 114
BssMI GATC 2 cut(s) 43, 82
BssNI GRCGYC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 46, 85
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 43, 82
BstNSI RCATGY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 187
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 67
CpoI CGGWCCG 1 cut(s) 67
CseI GACGC 1 cut(s) 106
CspI CGGWCCG 1 cut(s) 67
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 16, 36, 79, 98, 210
CviKI_1 RGCY 5 cut(s) 16, 36, 79, 98, 210
DpnI GATC 2 cut(s) 45, 84
DpnII GATC 2 cut(s) 43, 82
EciI GGCGGA 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 1 cut(s) 6
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 2 cut(s) 115, 168
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 115, 168
GluI GCNGC 2 cut(s) 115, 168
HaeIII GGCC 1 cut(s) 36
HapII CCGG 2 cut(s) 25, 216
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 8
HinfI GANTC 2 cut(s) 19, 62
HpaII CCGG 2 cut(s) 25, 216
HphI GGTGA 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 43, 71
Hpy99I CGWCG 2 cut(s) 122, 125
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 4
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 43, 82
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 38, 89, 141, 156
MalI GATC 2 cut(s) 45, 84
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 43, 82
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 52, 88
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 87, 108
MslI CAYNNNNRTG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 2 cut(s) 25, 216
NdeII GATC 2 cut(s) 43, 82
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 2 cut(s) 166, 211
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 116, 169
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 166, 211
PspPI GGNCC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 27
Rsr2I CGGWCCG 1 cut(s) 67
RsrII CGGWCCG 1 cut(s) 67
SaqAI TTAA 2 cut(s) 87, 108
SatI GCNGC 2 cut(s) 115, 168
Sau3AI GATC 2 cut(s) 43, 82
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 18, 81, 175
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 56, 86
SmoI CTYRAG 2 cut(s) 56, 86
SphI GCATGC 1 cut(s) 8
SsiI CCGC 3 cut(s) 114, 168, 213
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 55
TauI GCSGC 2 cut(s) 117, 170
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 87, 108
Tru9I TTAA 2 cut(s) 87, 108
TspDTI ATGAA 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 67
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.