Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Forward (+)

214387 .. 220128

Gene Structure 5742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgggaggtaatgaaagcagggaaagctctcgacaggacgaagaaattgaaaatggtgctgcatcgtctggtgactctgagttgtccaaaggagcagttgctgtcggcgtagagttagcggagaaacttgatgaagggaagggattggccaaaactctggctgatattacggatgccaacaagcgtggctcgctttattttgctgcaagagagggccagactgaggtgtgcaagtacttgctggaggaattgaaaattgatgttgataccaaagatgaagatggcgacactccccttattcatgctgctcgcctaggccatactgatactgccaaactgcttttggagtatggtgccaatccgtctatagccagtgatttaggggctacagctcttcatcattccgctggactaggtgcaggtgacaaagtaaatatgagtgctagtggagcgaaccctttacacatcgctgctgatattgggaacttggagattataaaatgtttgttaaaagctggagctgatcccagtgtaactgatgaggtgaggctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

184

Amino Acids

19.11

Weight (kDa)

4.63

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AarI	CACCTGC	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	353
AciI	CCGC	2 cut(s)	119, 405
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	50, 253
AluBI	AGCT	4 cut(s)	27, 392, 515, 521
AluI	AGCT	4 cut(s)	27, 392, 515, 521
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	147, 214, 316
ApeKI	GCWGC	4 cut(s)	59, 203, 305, 470
AspA2I	CCTAGG	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	83, 434
AvrII	CCTAGG	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	353
BbvI	GCAGC	4 cut(s)	46, 190, 292, 457
BccI	CCATC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	314, 413, 444
BfmI	CTRYAG	2 cut(s)	366, 387
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	4 cut(s)	60, 204, 306, 471
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	4 cut(s)	61, 205, 307, 472
BmcAI	AGTACT	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	71, 163
BmuI	ACTGGG	1 cut(s)	522
BpmI	CTGGAG	2 cut(s)	263, 537
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	372, 528
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	69, 213
BseNI	ACTGG	2 cut(s)	372, 528
BseXI	GCAGC	4 cut(s)	46, 190, 292, 457
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	149, 216, 318
BshNI	GGYRCC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	3 cut(s)	149, 216, 318
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	2 cut(s)	119, 405
BspANI	GGCC	3 cut(s)	149, 216, 318
BspCNI	CTCAG	2 cut(s)	70, 214
BspLI	GGNNCC	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	518
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	372, 528
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	523
BssT1I	CCWWGG	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	191, 310
BstDEI	CTNAG	2 cut(s)	78, 222
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	526
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 190, 449
BstSFI	CTRYAG	2 cut(s)	366, 387
BstV1I	GCAGC	4 cut(s)	46, 190, 292, 457
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	149, 216, 318
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	379, 535
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	191, 310
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	1 cut(s)	302
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	78, 222
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	1 cut(s)	305
FaiI	YATR	7 cut(s)	303, 321, 351, 368, 437, 497, 553
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	60, 204, 306, 471
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	60, 204, 306, 471
FspBI	CTAG	3 cut(s)	314, 413, 444
GluI	GCNGC	4 cut(s)	60, 204, 306, 471
GsuI	CTGGAG	2 cut(s)	263, 537
HaeIII	GGCC	3 cut(s)	149, 216, 318
Hin1II	CATG	1 cut(s)	305
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	2 cut(s)	83, 434
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	128, 133
HpyCH4V	TGCA	4 cut(s)	62, 206, 231, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 190, 449
HpyF3I	CTNAG	2 cut(s)	78, 222
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	523
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	92, 449, 518
Lsp1109I	GCAGC	4 cut(s)	46, 190, 292, 457
LweI	GCATC	2 cut(s)	71, 163
MaeI	CTAG	3 cut(s)	314, 413, 444
MaeIII	GTNAC	3 cut(s)	71, 422, 532
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	3 cut(s)	53, 290, 386
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	3 cut(s)	45, 248, 255
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	205, 217, 238, 535, 540
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	24, 190, 449
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	71, 422
PaqCI	CACCTGC	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	61, 205, 307, 472
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PsiI	TTATAA	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	4 cut(s)	60, 204, 306, 471
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	68
SetI	ASST	9 cut(s)	10, 29, 228, 394, 418, 424, 517, 523, 546
SfaNI	GCATC	2 cut(s)	71, 163
SfcI	CTRYAG	2 cut(s)	366, 387
Sse9I	AATT	3 cut(s)	45, 248, 255
SsiI	CCGC	2 cut(s)	119, 405
SspMI	CTAG	3 cut(s)	314, 413, 444
StyI	CCWWGG	1 cut(s)	313
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	45, 248, 255
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	379, 535
TseFI	GTSAC	2 cut(s)	71, 422
TseI	GCWGC	4 cut(s)	59, 203, 305, 470
Tsp45I	GTSAC	2 cut(s)	71, 422
TspDTI	ATGAA	5 cut(s)	27, 147, 290, 291, 386
TspGWI	ACGGA	2 cut(s)	185, 351
TspRI	CASTG	2 cut(s)	379, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaJI	CCTAGG	1 cut(s)	313
XspI	CTAG	3 cut(s)	314, 413, 444
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.