Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Reverse (-)

166581 .. 170835

Gene Structure 4255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atggcccctgacgcttctgatgcacttgcagctagggaaatagtgcagcagtttctgaatgctgcatgtactggggatgttgatctcttaaagagcgacactccccttattcatgctgctcgcctaggccatactgatactgcaaaactgcttcttgagtatggtgccaatccgtctatagccagtgatttaggggctacagctcttcatcattccgctggactaggaaacattgagttgctgaggtacttaatttccaagggtgtcgatgtcaattcacaaagtgatgctggttctcctttaatttgggctgctggtcatgaccaaccagatgctgtgaaagttctgttagaacaccacgctaatcctaatgctgaaagtgatgatgatattactccattgttgtcatctgtggcagctggttcattggcatgcttggagttattgattcaggcaggtgccaaagtaaatatgagtgctggtggagcgactcctttacacattgctgctgatattgggaacttggagattataaaatgtttgttaaaagctggagctgatcccaatgtaactgatgaggagggtttgaagccaatacaggttgcagctgcaagtgggaaccgaagcgctgtggagatcctctttcccttgacatcacaagttgaaaccatttcaaaatggacagttgacggcatagttgagtatatgcagtctgaaacaagcagacaacaggaacaaccgcgaaatactaaggaacttaatgtcccaaaagactctacttcactgaagaaagagctccctgaggtgacacctgaggcaaagaaaagagctgcagaagcaaaattgagaggaggcgatgctttcagtagaaaggattatcaagcggctgttgatgcatacacgcaggcaattgatttggacccaactgatgccatttttctttccaatcgaagcctttgttggcttcgtcttggccaagctgaacatgccttagctgatgcaaaggcctgcagggaattgaaaccagattggccaaaggcttgctttcgagaaggtgcagcattgcgcctaatgcaggcacgtacacactttcccatttactttctcatgttgtttactgcacaaaagaagaccaagagccatgaaatgttttgtttattattgcagaagtttgatgaagcagccaattgtttttatgagggcgtgcagctcgaccctgaaagtaaggaactcgtcgatgctttcagggaagcggttgaagctggaaggcagttccacagtaaagataaacaaaaaccaaaaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

435

Amino Acids

47.13

Weight (kDa)

5.38

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	2 cut(s)	164, 458
AccII	CGCG	1 cut(s)	742
AciI	CCGC	4 cut(s)	216, 740, 884, 1253
AclWI	GGATC	2 cut(s)	554, 631
AcoI	YGGCCR	2 cut(s)	973, 1031
AcuI	CTGAAG	1 cut(s)	806
AdeI	CACNNNGTG	1 cut(s)	284
AfaI	GTAC	3 cut(s)	70, 248, 1084
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	1075
AgsI	TTSAA	5 cut(s)	589, 665, 675, 1021, 1259
AjuI	GAANNNNNNNTTGG	2 cut(s)	943, 975
AloI	GAACNNNNNNTCC	2 cut(s)	747, 779
Alw21I	GWGCWC	1 cut(s)	798
AlwI	GGATC	2 cut(s)	554, 631
AlwNI	CAGNNNCTG	2 cut(s)	55, 335
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	5 cut(s)	3, 127, 973, 1005, 1031
AspA2I	CCTAGG	1 cut(s)	124
AspLEI	GCGC	2 cut(s)	629, 1068
AspS9I	GGNCC	2 cut(s)	4, 919
AsuHPI	GGTGA	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	919
AvrII	CCTAGG	1 cut(s)	124
AxyI	CCTNAGG	2 cut(s)	801, 813
BalI	TGGCCA	2 cut(s)	975, 1033
BanI	GGYRCC	2 cut(s)	164, 458
BanII	GRGCYC	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	1136
Bbv12I	GWGCWC	1 cut(s)	798
BbvCI	CCTCAGC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	706
BfaI	CTAG	3 cut(s)	33, 125, 224
BfmI	CTRYAG	4 cut(s)	177, 198, 831, 1009
BfoI	RGCGCY	1 cut(s)	630
BfuAI	ACCTGC	1 cut(s)	446
BlnI	CCTAGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	919
BmgT120I	GGNCC	2 cut(s)	4, 919
BmiI	GGNNCC	5 cut(s)	6, 166, 460, 620, 921
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	8 cut(s)	10, 277, 322, 847, 883, 919, 988, 1228
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	1136
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	2 cut(s)	242, 991
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	1082
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	124, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	1075
Bse1I	ACTGG	2 cut(s)	76, 183
Bse21I	CCTNAGG	2 cut(s)	801, 813
Bse3DI	GCAATG	2 cut(s)	501, 1061
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	124, 258
BseGI	GGATG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	1075
BseMI	GCAATG	2 cut(s)	501, 1061
BseMII	CTCAG	3 cut(s)	233, 792, 804
BseNI	ACTGG	2 cut(s)	76, 183
BseRI	GAGGAG	2 cut(s)	593, 864
BsgI	GTGCAG	4 cut(s)	65, 1077, 1104, 1226
Bsh1236I	CGCG	1 cut(s)	742
BshFI	GGCC	5 cut(s)	5, 129, 975, 1007, 1033
BshNI	GGYRCC	2 cut(s)	164, 458
BsiHKAI	GWGCWC	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	5, 129, 975, 1007, 1033
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	3 cut(s)	82, 559, 636
BspACI	CCGC	4 cut(s)	216, 740, 884, 1253
BspANI	GGCC	5 cut(s)	5, 129, 975, 1007, 1033
BspCNI	CTCAG	3 cut(s)	234, 793, 805
BspFNI	CGCG	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	5 cut(s)	6, 166, 460, 620, 921
BspMAI	CTGCAG	2 cut(s)	835, 1013
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	554, 631
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	2 cut(s)	164, 458
BsrDI	GCAATG	2 cut(s)	501, 1061
BsrI	ACTGG	2 cut(s)	76, 183
BssECI	CCNNGG	2 cut(s)	124, 258
BssMI	GATC	3 cut(s)	82, 559, 636
BssT1I	CCWWGG	2 cut(s)	124, 258
Bst4CI	ACNGT	2 cut(s)	685, 1280
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	1082
BstC8I	GCNNGC	7 cut(s)	121, 433, 906, 1009, 1042, 1077, 1205
BstDEI	CTNAG	6 cut(s)	242, 750, 801, 813, 991, 1305
BstENI	CCTNNNNNAGG	1 cut(s)	1073
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	2 cut(s)	629, 1068
BstKTI	GATC	3 cut(s)	85, 562, 639
BstMBI	GATC	3 cut(s)	82, 559, 636
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 20, 29, 485, 836, 893, 986, 1072, 1259
BstNSI	RCATGY	3 cut(s)	69, 435, 989
BstSFI	CTRYAG	4 cut(s)	177, 198, 831, 1009
BstUI	CGCG	1 cut(s)	742
BstV2I	GAAGAC	1 cut(s)	1136
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
Bsu36I	CCTNAGG	2 cut(s)	801, 813
BsuRI	GGCC	5 cut(s)	5, 129, 975, 1007, 1033
BtgZI	GCGATG	1 cut(s)	870
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	190, 782
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	7 cut(s)	121, 433, 906, 1009, 1042, 1077, 1205
CaiI	CAGNNNCTG	2 cut(s)	55, 335
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	2 cut(s)	629, 1068
Cfr13I	GGNCC	2 cut(s)	4, 919
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	69, 247, 1083
CviAII	CATG	7 cut(s)	66, 113, 320, 432, 986, 1108, 1142
CviQI	GTAC	3 cut(s)	69, 247, 1083
DdeI	CTNAG	6 cut(s)	242, 750, 801, 813, 991, 1305
DpnI	GATC	3 cut(s)	84, 561, 638
DpnII	GATC	3 cut(s)	82, 559, 636
DraIII	CACNNNGTG	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	973, 1031
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	796
Eco130I	CCWWGG	2 cut(s)	124, 258
Eco147I	AGGCCT	1 cut(s)	1007
Eco24I	GRGCYC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	919
Eco47III	AGCGCT	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	806
Eco81I	CCTNAGG	2 cut(s)	801, 813
EcoICRI	GAGCTC	1 cut(s)	796
EcoNI	CCTNNNNNAGG	1 cut(s)	1073
EcoT14I	CCWWGG	2 cut(s)	124, 258
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	2 cut(s)	124, 258
FaeI	CATG	7 cut(s)	69, 116, 323, 435, 989, 1111, 1145
FalI	AAGNNNNNCTT	2 cut(s)	1028, 1060
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	7 cut(s)	65, 112, 319, 431, 985, 1107, 1141
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	798
FspBI	CTAG	3 cut(s)	33, 125, 224
GlaI	GCGC	2 cut(s)	628, 1067
GsuI	CTGGAG	1 cut(s)	573
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	5 cut(s)	5, 129, 975, 1007, 1033
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	629, 1068
Hin1II	CATG	7 cut(s)	69, 116, 323, 435, 989, 1111, 1145
Hin6I	GCGC	2 cut(s)	627, 1066
HinP1I	GCGC	2 cut(s)	627, 1066
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	448, 490, 773
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	3 cut(s)	688, 1085, 1116
Hpy188I	TCNGA	3 cut(s)	19, 57, 715
Hpy188III	TCNNGA	3 cut(s)	155, 320, 1049
Hpy8I	GTNNAC	3 cut(s)	688, 1085, 1116
Hpy99I	CGWCG	1 cut(s)	1238
HpyAV	CCTTC	2 cut(s)	1046, 1260
HpyCH4III	ACNGT	2 cut(s)	685, 1280
HpyCH4IV	ACGT	1 cut(s)	1081
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 20, 29, 485, 836, 893, 986, 1072, 1259
HpyF3I	CTNAG	6 cut(s)	242, 750, 801, 813, 991, 1305
HpySE526I	ACGT	1 cut(s)	1081
Hsp92II	CATG	7 cut(s)	69, 116, 323, 435, 989, 1111, 1145
HspAI	GCGC	2 cut(s)	627, 1066
Kzo9I	GATC	3 cut(s)	82, 559, 636
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	485, 554, 801
LweI	GCATC	8 cut(s)	10, 277, 322, 847, 883, 919, 988, 1228
MaeI	CTAG	3 cut(s)	33, 125, 224
MaeII	ACGT	1 cut(s)	1081
MaeIII	GTNAC	2 cut(s)	568, 805
MalI	GATC	3 cut(s)	84, 561, 638
MboI	GATC	3 cut(s)	82, 559, 636
MboII	GAAGA	3 cut(s)	197, 799, 1141
MfeI	CAATTG	2 cut(s)	909, 1186
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	798
MlsI	TGGCCA	2 cut(s)	975, 1033
MluCI	AATT	7 cut(s)	252, 274, 303, 842, 909, 1016, 1186
MluNI	TGGCCA	2 cut(s)	975, 1033
MlyI	GAGTC	2 cut(s)	484, 767
MnlI	CCTC	9 cut(s)	237, 571, 574, 650, 796, 808, 842, 845, 1192
Mox20I	TGGCCA	2 cut(s)	975, 1033
Mph1103I	ATGCAT	1 cut(s)	898
MscI	TGGCCA	2 cut(s)	975, 1033
MseI	TTAA	5 cut(s)	89, 251, 302, 545, 759
MslI	CAYNNNNRTG	1 cut(s)	430
Msp20I	TGGCCA	2 cut(s)	975, 1033
MspA1I	CMGCKG	3 cut(s)	218, 419, 608
MunI	CAATTG	2 cut(s)	909, 1186
Mva1269I	GAATGC	1 cut(s)	64
MvnI	CGCG	1 cut(s)	742
MwoI	GCNNNNNNNGC	9 cut(s)	11, 20, 29, 485, 836, 893, 986, 1072, 1259
NdeII	GATC	3 cut(s)	82, 559, 636
NlaIII	CATG	7 cut(s)	69, 116, 323, 435, 989, 1111, 1145
NlaIV	GGNNCC	5 cut(s)	6, 166, 460, 620, 921
NmuCI	GTSAC	1 cut(s)	805
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	3 cut(s)	69, 435, 989
PaeI	GCATGC	1 cut(s)	435
PagI	TCATGA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	1007
PciSI	GCTCTTC	1 cut(s)	210
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	448
PleI	GAGTC	2 cut(s)	484, 767
PpsI	GAGTC	2 cut(s)	484, 767
Ppu21I	YACGTR	1 cut(s)	1082
PsiI	TTATAA	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	798
PspN4I	GGNNCC	5 cut(s)	6, 166, 460, 620, 921
PspPI	GGNCC	2 cut(s)	4, 919
PstI	CTGCAG	2 cut(s)	835, 1013
PstNI	CAGNNNCTG	2 cut(s)	55, 335
PsuI	RGATCY	1 cut(s)	636
PvuII	CAGCTG	2 cut(s)	419, 608
RsaI	GTAC	3 cut(s)	70, 248, 1084
RsaNI	GTAC	3 cut(s)	69, 247, 1083
RseI	CAYNNNNRTG	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	5 cut(s)	89, 251, 302, 545, 759
Sau3AI	GATC	3 cut(s)	82, 559, 636
Sau96I	GGNCC	2 cut(s)	4, 919
SbfI	CCTGCAGG	1 cut(s)	1013
SchI	GAGTC	2 cut(s)	484, 767
SdaI	CCTGCAGG	1 cut(s)	1013
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	8 cut(s)	10, 277, 322, 847, 883, 919, 988, 1228
SfcI	CTRYAG	4 cut(s)	177, 198, 831, 1009
SinI	GGWCC	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	435
Sse8387I	CCTGCAGG	1 cut(s)	1013
Sse9I	AATT	7 cut(s)	252, 274, 303, 842, 909, 1016, 1186
SseBI	AGGCCT	1 cut(s)	1007
SsiI	CCGC	4 cut(s)	216, 740, 884, 1253
SspMI	CTAG	3 cut(s)	33, 125, 224
SstI	GAGCTC	1 cut(s)	798
StuI	AGGCCT	1 cut(s)	1007
StyI	CCWWGG	2 cut(s)	124, 258
TaaI	ACNGT	2 cut(s)	685, 1280
TaiI	ACGT	1 cut(s)	1084
TaqI	TCGA	5 cut(s)	267, 949, 1048, 1212, 1236
TasI	AATT	7 cut(s)	252, 274, 303, 842, 909, 1016, 1186
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	5 cut(s)	89, 251, 302, 545, 759
Tru9I	TTAA	5 cut(s)	89, 251, 302, 545, 759
TscAI	CASTG	2 cut(s)	190, 789
TseFI	GTSAC	1 cut(s)	805
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	5 cut(s)	101, 197, 414, 1158, 1191
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	190, 789
VpaK11BI	GGWCC	1 cut(s)	919
XagI	CCTNNNNNAGG	1 cut(s)	1073
XceI	RCATGY	3 cut(s)	69, 435, 989
XmaJI	CCTAGG	1 cut(s)	124
XspI	CTAG	3 cut(s)	33, 125, 224
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.