Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004482.1

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Forward (+)

128161 .. 130943

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004482.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggtgatctatgatagccgtcggatcaatgaagagctgatcgaacgacataagaaacttgatgaagggaagggattggccaaaactgtggctgatattaaggatgccaacaagcgaggcacgcttcattttgctgcaagagagggccagactaagatgtgcaagtacttgctggaggaattgaaaattgatgttgataccaaagatgaagatggcgacactctctttatacttgctgctcgcctaggccatactgatactgccaaactgcttcttgagtatggaaacattgagttgctgaggtacttaatttccaagggtgtcgatgtcaattcacaaagtgatgctggttctcctttaatttgggctgctggtcatgaccaaccagatgctgtgaaagttttgttagaacaccaggctaatcagcctcatgctaaaagtgatgatgatattactccattgttgtcatctgtggcagctggttcactggcgtgcttggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

167

Amino Acids

18.39

Weight (kDa)

5.24

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	167, 305
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	414
AleI	CACNNNNGTG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	37, 479
AluI	AGCT	2 cut(s)	37, 479
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	3 cut(s)	78, 145, 247
ApeKI	GCWGC	4 cut(s)	134, 236, 368, 476
AspA2I	CCTAGG	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	16
AvrII	CCTAGG	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	121, 223, 355, 488
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	1 cut(s)	416
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	135, 237, 369, 477
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	4 cut(s)	136, 238, 370, 478
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	3 cut(s)	94, 334, 379
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	244, 315
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	244, 315
BseGI	GGATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	121, 223, 355, 488
BshFI	GGCC	3 cut(s)	80, 147, 249
BsnI	GGCC	3 cut(s)	80, 147, 249
Bsp143I	GATC	3 cut(s)	6, 24, 39
BspANI	GGCC	3 cut(s)	80, 147, 249
BspCNI	CTCAG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	376
BspPI	GGATC	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	244, 315
BssMI	GATC	3 cut(s)	6, 24, 39
BssT1I	CCWWGG	2 cut(s)	244, 315
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	122, 241, 493
BstDEI	CTNAG	2 cut(s)	153, 299
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	3 cut(s)	9, 27, 42
BstMBI	GATC	3 cut(s)	6, 24, 39
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	121, 223, 355, 488
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	80, 147, 249
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	3 cut(s)	122, 241, 493
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	166, 304
CviAII	CATG	2 cut(s)	377, 431
CviQI	GTAC	2 cut(s)	166, 304
DdeI	CTNAG	2 cut(s)	153, 299
DpnI	GATC	3 cut(s)	8, 26, 41
DpnII	GATC	3 cut(s)	6, 24, 39
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	244, 315
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	244, 315
ErhI	CCWWGG	2 cut(s)	244, 315
FaeI	CATG	2 cut(s)	380, 434
FaiI	YATR	7 cut(s)	12, 51, 230, 252, 282, 378, 432
FatI	CATG	2 cut(s)	376, 430
Fnu4HI	GCNGC	4 cut(s)	135, 237, 369, 477
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	4 cut(s)	135, 237, 369, 477
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	4 cut(s)	135, 237, 369, 477
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	80, 147, 249
Hin1II	CATG	2 cut(s)	380, 434
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	275, 377
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	59, 64
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	137, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	153, 299
Hsp92II	CATG	2 cut(s)	380, 434
Kzo9I	GATC	3 cut(s)	6, 24, 39
LguI	GCTCTTC	1 cut(s)	27
LpnPI	CCDG	9 cut(s)	158, 161, 333, 357, 399, 401, 428, 465, 473
Lsp1109I	GCAGC	4 cut(s)	121, 223, 355, 488
LweI	GCATC	3 cut(s)	94, 334, 379
MaeI	CTAG	1 cut(s)	245
MalI	GATC	3 cut(s)	8, 26, 41
MboI	GATC	3 cut(s)	6, 24, 39
MboII	GAAGA	2 cut(s)	44, 221
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	5 cut(s)	179, 186, 309, 331, 360
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	5 cut(s)	110, 136, 169, 294, 438
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	3 cut(s)	99, 308, 359
MslI	CAYNNNNRTG	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	3 cut(s)	6, 24, 39
NlaIII	CATG	2 cut(s)	380, 434
OliI	CACNNNNGTG	1 cut(s)	490
PagI	TCATGA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	136, 238, 370, 478
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	2 cut(s)	167, 305
RsaNI	GTAC	2 cut(s)	166, 304
RseI	CAYNNNNRTG	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	99, 308, 359
SatI	GCNGC	4 cut(s)	135, 237, 369, 477
Sau3AI	GATC	3 cut(s)	6, 24, 39
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	3 cut(s)	39, 305, 481
SfaNI	GCATC	3 cut(s)	94, 334, 379
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	179, 186, 309, 331, 360
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	244, 315
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	42, 324
TasI	AATT	5 cut(s)	179, 186, 309, 331, 360
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	99, 308, 359
Tru9I	TTAA	3 cut(s)	99, 308, 359
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	4 cut(s)	134, 236, 368, 476
TspDTI	ATGAA	4 cut(s)	45, 78, 116, 222
TspRI	CASTG	1 cut(s)	492
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.