Rh6AG203900

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002248
Physical Location & Seq
Forward (+)
36418599 .. 36448422
29824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG203900.1

Sequence Viewer

Length: 777 bp
ATGTTGAATATTGATTGGAGATGTAGGGTTATTCTTGACTGCGTAGAGTTGGCGGAGAAACTTGATGAAGGGAAGGGATTGGCCAAAACTGTGGCTGATATTAAGGATGCCAACAAGCGTGGCGCACTTCATTTTGCTGCAAGAGAGGGCCAGACTGAGATGTGCAAGTACTTGCTGGAGGAATTGAAAATTGATGTTGATACAAAAGATAAAGATGGAAACATTGAGTTTCAGCTTTCCAAGGGTGTCGATGTCAATTCACAAAGTGATGATGGTTCTCCTTTAATTTGGCCTGCTGGTCATGACCAACCAGATGCTATGAAAGTTCTATTAGAACACCAGGCTAATGCAGGTGCCAAAGTAAATATGAGTGCTGGTGGAGCGACCCCTTTACACATCGCTGCTGATATTGGGAACTTGGAGATTATAAAATGTTTGTTAAAAGTTGGAGCTGATCCCAGTGTAACTGATGAGGAGGTCCTTGACCGGAATGACGACCTTTCCAATCTTGGTCTCGCCGAAGGTGCGGTCATAGATGAGCTTGATTTTGATTTGGAGGTGGTCGAGGGCGGAGTTGTGGAGGGTGAACTTGAGGGTGTGGTTCCATTTGGGGTTGGTGCCGATTTCTTTGTGGACGGGAGTGCGGAGCTTCTGCTTCTTGACGCTGTTACCGGAGACGGAGACAACGACATAGACGTCCATCTTAGAGAACAAGTTCACGTCCTTGATATCATTTGCGCTAAACACCGTTATTTCCAAAGGCCTGCAATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

258

Amino Acids

27.9

Weight (kDa)

4.39

Isoelectric Point (pI)

23.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 75 - 157 1.1e-11 Ankyrin repeats (3 copies)
Ank PF00023 127 - 157 8.3e-08 Ankyrin repeat
Ank_3 PF13606 127 - 154 6.7e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AarI CACCTGC 1 cut(s) 341
AasI GACNNNNNNGTC 1 cut(s) 695
AatII GACGTC 1 cut(s) 699
Acc36I ACCTGC 1 cut(s) 341
AccB1I GGYRCC 2 cut(s) 353, 617
AciI CCGC 4 cut(s) 53, 527, 570, 644
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 696
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 7, 187
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 4 cut(s) 235, 452, 541, 649
AluI AGCT 4 cut(s) 235, 452, 541, 649
Alw26I GTCTC 3 cut(s) 518, 669, 675
AlwI GGATC 1 cut(s) 449
AoxI GGCC 4 cut(s) 81, 148, 290, 761
ApeKI GCWGC 2 cut(s) 137, 401
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 2 cut(s) 125, 740
AspS9I GGNCC 2 cut(s) 148, 478
AsuHPI GGTGA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 478
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 353, 617
BbvI GCAGC 2 cut(s) 124, 388
BccI CCATC 3 cut(s) 209, 266, 708
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 3 cut(s) 518, 669, 675
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 2 cut(s) 138, 402
BlsI GCNGC 2 cut(s) 139, 403
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 478
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 148, 478
BmiI GGNNCC 3 cut(s) 355, 603, 619
BmrFI CCNGG 1 cut(s) 341
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 2 cut(s) 97, 304
BmuI ACTGGG 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 2 cut(s) 486, 671
Bse1I ACTGG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 124, 388
BshFI GGCC 4 cut(s) 83, 150, 292, 763
BshNI GGYRCC 2 cut(s) 353, 617
BsiSI CCGG 2 cut(s) 487, 672
BsmAI GTCTC 3 cut(s) 518, 669, 675
BsmBI CGTCTC 1 cut(s) 669
BsnI GGCC 4 cut(s) 83, 150, 292, 763
Bso31I GGTCTC 1 cut(s) 518
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 4 cut(s) 53, 527, 570, 644
BspANI GGCC 4 cut(s) 83, 150, 292, 763
BspCNI CTCAG 1 cut(s) 148
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 355, 603, 619
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 449
BspT107I GGYRCC 2 cut(s) 353, 617
BspTNI GGTCTC 1 cut(s) 518
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 454
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 91, 749
BstACI GRCGYC 1 cut(s) 696
BstC8I GCNNGC 2 cut(s) 294, 765
BstDEI CTNAG 2 cut(s) 156, 704
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 2 cut(s) 125, 740
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 3 cut(s) 518, 669, 675
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 2 cut(s) 380, 524
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 124, 388
BstXI CCANNNNNNTGG 1 cut(s) 91
BsuRI GGCC 4 cut(s) 83, 150, 292, 763
BtgZI GCGATG 1 cut(s) 382
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 466
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 294, 765
CciI TCATGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 125, 740
Cfr13I GGNCC 2 cut(s) 148, 478
CseI GACGC 1 cut(s) 671
Csp6I GTAC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 302
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 156, 704
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 266
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 81
EciI GGCGGA 2 cut(s) 68, 585
Eco130I CCWWGG 1 cut(s) 240
Eco147I AGGCCT 1 cut(s) 763
Eco31I GGTCTC 1 cut(s) 518
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 339
EcoRV GATATC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 669
FaeI CATG 1 cut(s) 305
FaiI YATR 6 cut(s) 303, 320, 368, 428, 533, 692
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 138, 402
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 138, 402
GlaI GCGC 2 cut(s) 124, 739
GluI GCNGC 2 cut(s) 138, 402
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 4 cut(s) 83, 150, 292, 763
HapII CCGG 2 cut(s) 487, 672
HgaI GACGC 1 cut(s) 671
HhaI GCGC 2 cut(s) 125, 740
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 2 cut(s) 123, 738
HinP1I GCGC 2 cut(s) 123, 738
HpaII CCGG 2 cut(s) 487, 672
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 3 cut(s) 587, 634, 718
Hpy188III TCNNGA 3 cut(s) 35, 302, 659
Hpy8I GTNNAC 3 cut(s) 587, 634, 718
HpyAV CCTTC 3 cut(s) 62, 67, 515
HpyCH4III ACNGT 2 cut(s) 91, 749
HpyCH4IV ACGT 2 cut(s) 696, 720
HpyCH4V TGCA 4 cut(s) 140, 165, 350, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 524
HpyF3I CTNAG 2 cut(s) 156, 704
HpySE526I ACGT 2 cut(s) 696, 720
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 2 cut(s) 123, 738
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 3 cut(s) 380, 449, 646
Lsp1109I GCAGC 2 cut(s) 124, 388
LweI GCATC 2 cut(s) 97, 304
MaeII ACGT 2 cut(s) 696, 720
MaeIII GTNAC 2 cut(s) 463, 667
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 4 cut(s) 182, 189, 256, 285
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 8 cut(s) 139, 172, 466, 469, 550, 559, 574, 586
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 714
MscI TGGCCA 1 cut(s) 83
MseI TTAA 3 cut(s) 102, 284, 440
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 487, 672
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 380, 524
NdeII GATC 1 cut(s) 454
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 3 cut(s) 355, 603, 619
PagI TCATGA 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 341
PceI AGGCCT 1 cut(s) 763
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 693
PdmI GAANNNNTTC 1 cut(s) 714
PkrI GCNGC 2 cut(s) 139, 403
PpuMI RGGWCCY 1 cut(s) 478
PsiI TTATAA 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 478
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 355, 603, 619
PspPI GGNCC 2 cut(s) 148, 478
PspPPI RGGWCCY 1 cut(s) 478
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 102, 284, 440
SatI GCNGC 2 cut(s) 138, 402
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 2 cut(s) 148, 478
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 341
SfaNI GCATC 2 cut(s) 97, 304
SinI GGWCC 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 4 cut(s) 182, 189, 256, 285
SseBI AGGCCT 1 cut(s) 763
SsiI CCGC 4 cut(s) 53, 527, 570, 644
SspI AATATT 1 cut(s) 10
StuI AGGCCT 1 cut(s) 763
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 91, 749
TaiI ACGT 2 cut(s) 699, 723
TaqI TCGA 2 cut(s) 249, 564
TasI AATT 4 cut(s) 182, 189, 256, 285
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 3 cut(s) 102, 284, 440
Tru9I TTAA 3 cut(s) 102, 284, 440
TscAI CASTG 1 cut(s) 466
TseI GCWGC 2 cut(s) 137, 401
TspDTI ATGAA 3 cut(s) 81, 119, 335
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 714
ZraI GACGTC 1 cut(s) 697
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.