Rmu_sc0004087.1_g000001

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004087.1
OG0002248
Physical Location & Seq
Forward (+)
1 .. 3321
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004087.1_g000001.1.cds

Sequence Viewer

Length: 638 bp
tagagttggcggagaaacttgatgaagggaagggattggccaaaactgtggctgatattaaggatgccaacaagcgtggcgcacttcattttgctgcaagagagggccagactgagatgtgcaagtacttgctggaggaattgaaaattgatgttgatacaaaagataaagatggcgacactccccttattcatgctgctcgcctaggccatactaatactgccaaactgcttcttgagtatggtgccaatccgtctatagccagtgatttaggggctacagcttttcatcattccgctggactaggaaacattgagtttcagctttccaagggtgtcgatgtcaattcacaaagtgatgatggttctcctttaatttggcctgctggtcatgaccaaccagatgctatgaaagttctgttagaacaccaggctaatgcaggtgccaaagtaaatatgagtgctggtggagcgacccctttacacatcgctgctgatattgggaacttggagattataaaatgtttgttaaaagttggagctgatcccagtgtaactgatgaggtgaggctatcactacactctttccaacgtgttcgcttgcttatcaggttatctttgcataagctgttagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

211

Amino Acids

22.59

Weight (kDa)

5.91

Isoelectric Point (pI)

18.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 517
AarI CACCTGC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 2 cut(s) 244, 442
AciI CCGC 2 cut(s) 10, 296
AclWI GGATC 1 cut(s) 538
AcoI YGGCCR 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 355
AfaI GTAC 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 4 cut(s) 283, 324, 541, 627
AluI AGCT 4 cut(s) 283, 324, 541, 627
AlwI GGATC 1 cut(s) 538
AoxI GGCC 4 cut(s) 38, 105, 207, 379
ApeKI GCWGC 3 cut(s) 94, 196, 490
AspA2I CCTAGG 1 cut(s) 204
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 576
AvrII CCTAGG 1 cut(s) 204
BalI TGGCCA 1 cut(s) 40
BanI GGYRCC 2 cut(s) 244, 442
BbvI GCAGC 3 cut(s) 81, 183, 477
BccI CCATC 2 cut(s) 166, 355
BciT130I CCWGG 1 cut(s) 430
BfaI CTAG 2 cut(s) 205, 304
BfmI CTRYAG 2 cut(s) 257, 278
BfuAI ACCTGC 1 cut(s) 430
BisI GCNGC 3 cut(s) 95, 197, 491
BlnI CCTAGG 1 cut(s) 204
BlsI GCNGC 3 cut(s) 96, 198, 492
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 246, 444
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 54, 393
BmuI ACTGGG 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 204, 329
Bse1I ACTGG 2 cut(s) 263, 548
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 204, 329
BseGI GGATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 263, 548
BseXI GCAGC 3 cut(s) 81, 183, 477
BshFI GGCC 4 cut(s) 40, 107, 209, 381
BshNI GGYRCC 2 cut(s) 244, 442
BsnI GGCC 4 cut(s) 40, 107, 209, 381
Bsp143I GATC 1 cut(s) 543
BspACI CCGC 2 cut(s) 10, 296
BspANI GGCC 4 cut(s) 40, 107, 209, 381
BspCNI CTCAG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 246, 444
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 1 cut(s) 538
BspT107I GGYRCC 2 cut(s) 244, 442
BsrI ACTGG 2 cut(s) 263, 548
BssECI CCNNGG 2 cut(s) 204, 329
BssMI GATC 1 cut(s) 543
BssT1I CCWWGG 2 cut(s) 204, 329
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 201, 383, 601
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 546
BstMBI GATC 1 cut(s) 543
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 2 cut(s) 257, 278
BstV1I GCAGC 3 cut(s) 81, 183, 477
BstXI CCANNNNNNTGG 1 cut(s) 48
BsuRI GGCC 4 cut(s) 40, 107, 209, 381
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 270, 555
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 3 cut(s) 201, 383, 601
CciI TCATGA 1 cut(s) 390
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 2 cut(s) 193, 391
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 38
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 204, 329
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 2 cut(s) 204, 329
ErhI CCWWGG 2 cut(s) 204, 329
FaeI CATG 2 cut(s) 196, 394
FatI CATG 2 cut(s) 192, 390
Fnu4HI GCNGC 3 cut(s) 95, 197, 491
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 3 cut(s) 95, 197, 491
FspBI CTAG 2 cut(s) 205, 304
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 95, 197, 491
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 4 cut(s) 40, 107, 209, 381
HhaI GCGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 196, 394
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HphI GGTGA 1 cut(s) 576
Hpy188III TCNNGA 2 cut(s) 235, 391
HpyAV CCTTC 2 cut(s) 19, 24
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 4 cut(s) 97, 122, 439, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 2 cut(s) 196, 394
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 469, 538
Lsp1109I GCAGC 3 cut(s) 81, 183, 477
LweI GCATC 2 cut(s) 54, 393
MaeI CTAG 2 cut(s) 205, 304
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 1 cut(s) 552
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 4 cut(s) 139, 146, 345, 374
MluNI TGGCCA 1 cut(s) 40
MmeI TCCRAC 2 cut(s) 516, 612
MnlI CCTC 4 cut(s) 96, 129, 555, 560
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 3 cut(s) 59, 373, 529
Msp20I TGGCCA 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 469
NdeII GATC 1 cut(s) 543
NlaIII CATG 2 cut(s) 196, 394
NlaIV GGNNCC 2 cut(s) 246, 444
PagI TCATGA 1 cut(s) 390
PaqCI CACCTGC 1 cut(s) 430
PkrI GCNGC 3 cut(s) 96, 198, 492
PsiI TTATAA 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 246, 444
PspPI GGNCC 1 cut(s) 105
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 59, 373, 529
SatI GCNGC 3 cut(s) 95, 197, 491
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 430
SetI ASST 8 cut(s) 285, 326, 444, 543, 566, 594, 613, 629
SfaNI GCATC 2 cut(s) 54, 393
SfcI CTRYAG 2 cut(s) 257, 278
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 4 cut(s) 139, 146, 345, 374
SsiI CCGC 2 cut(s) 10, 296
SspMI CTAG 2 cut(s) 205, 304
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 2 cut(s) 204, 329
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 594
TaqI TCGA 1 cut(s) 338
TasI AATT 4 cut(s) 139, 146, 345, 374
TatI WGTACW 1 cut(s) 125
Tru1I TTAA 3 cut(s) 59, 373, 529
Tru9I TTAA 3 cut(s) 59, 373, 529
TscAI CASTG 2 cut(s) 270, 555
TseI GCWGC 3 cut(s) 94, 196, 490
TspDTI ATGAA 5 cut(s) 38, 76, 181, 277, 424
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 270, 555
XmaJI CCTAGG 1 cut(s) 204
XspI CTAG 2 cut(s) 205, 304
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.