Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000041.1

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Forward (+)

134700 .. 136189

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000041.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggctgatattaaggatgccaacaagcgtggcgcacttcattttgcagctgcaaaagagggccagactaagatgtgcaagtacttgctggaggaattgaaaattgatgttgataccaaagataaagatgacgacactccccttattcatgctgctggcctaggccatactgatactgccaaactgcttcttgagtatggtgccaatccgtctagagccagtgatttaggggctacagcttttcatcattccgctggactaggaaacattgagttgatgagttacttaatttccaagggtgtcgatgtcaattcacaaagtgatgatggttttcctttaatttggcctactggtcatgaccaaccagatgctatgaaagttctgttagaacaccaggctaatgcaggtgccaaagtaaatatgagtgttggtggagcgacccctttacacatcgctgctgatattgggaacttggagattataaaatgtttgttaaaagttggagctgatcccagtgtaactgataaggtgaggctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

179

Amino Acids

19.02

Weight (kDa)

5.53

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AarI	CACCTGC	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	200, 407
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	3 cut(s)	50, 239, 506
AluI	AGCT	3 cut(s)	50, 239, 506
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	4 cut(s)	61, 157, 163, 344
ApeKI	GCWGC	4 cut(s)	47, 50, 152, 455
AspA2I	CCTAGG	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	200, 407
BbvI	GCAGC	4 cut(s)	37, 59, 139, 442
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	395
BfaI	CTAG	3 cut(s)	161, 213, 260
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	4 cut(s)	48, 51, 153, 456
BlnI	CCTAGG	1 cut(s)	160
BlsI	GCNGC	4 cut(s)	49, 52, 154, 457
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	202, 409
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	2 cut(s)	7, 358
BmuI	ACTGGG	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	160, 294
Bse1I	ACTGG	3 cut(s)	219, 355, 513
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	160, 294
BseGI	GGATG	1 cut(s)	22
BseNI	ACTGG	3 cut(s)	219, 355, 513
BseXI	GCAGC	4 cut(s)	37, 59, 139, 442
BshFI	GGCC	4 cut(s)	63, 159, 165, 346
BshNI	GGYRCC	2 cut(s)	200, 407
BsnI	GGCC	4 cut(s)	63, 159, 165, 346
Bsp143I	GATC	1 cut(s)	508
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	4 cut(s)	63, 159, 165, 346
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	202, 409
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	200, 407
BsrI	ACTGG	3 cut(s)	219, 355, 513
BssECI	CCNNGG	2 cut(s)	160, 294
BssMI	GATC	1 cut(s)	508
BssT1I	CCWWGG	2 cut(s)	160, 294
Bst2UI	CCWGG	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	37, 59, 139, 442
BsuRI	GGCC	4 cut(s)	63, 159, 165, 346
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	226, 520
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	2 cut(s)	149, 356
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	160, 294
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	160, 294
ErhI	CCWWGG	2 cut(s)	160, 294
FaeI	CATG	2 cut(s)	152, 359
FaiI	YATR	8 cut(s)	150, 168, 198, 357, 374, 422, 482, 538
FatI	CATG	2 cut(s)	148, 355
Fnu4HI	GCNGC	4 cut(s)	48, 51, 153, 456
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	48, 51, 153, 456
FspBI	CTAG	3 cut(s)	161, 213, 260
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	4 cut(s)	48, 51, 153, 456
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	63, 159, 165, 346
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	152, 359
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
Hpy188III	TCNNGA	3 cut(s)	191, 213, 356
HpyCH4V	TGCA	4 cut(s)	47, 53, 78, 404
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	152, 359
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	434, 503
Lsp1109I	GCAGC	4 cut(s)	37, 59, 139, 442
LweI	GCATC	2 cut(s)	7, 358
MaeI	CTAG	3 cut(s)	161, 213, 260
MaeIII	GTNAC	2 cut(s)	281, 517
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MluCI	AATT	5 cut(s)	95, 102, 288, 310, 339
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	52, 85, 525
MseI	TTAA	4 cut(s)	12, 287, 338, 494
MspA1I	CMGCKG	2 cut(s)	50, 254
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	2 cut(s)	152, 359
NlaIV	GGNNCC	2 cut(s)	202, 409
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	49, 52, 154, 457
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	202, 409
PspPI	GGNCC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	4 cut(s)	12, 287, 338, 494
SatI	GCNGC	4 cut(s)	48, 51, 153, 456
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	5 cut(s)	52, 241, 409, 508, 531
SfaNI	GCATC	2 cut(s)	7, 358
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	5 cut(s)	95, 102, 288, 310, 339
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	3 cut(s)	161, 213, 260
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	160, 294
TaqI	TCGA	1 cut(s)	303
TasI	AATT	5 cut(s)	95, 102, 288, 310, 339
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	4 cut(s)	12, 287, 338, 494
Tru9I	TTAA	4 cut(s)	12, 287, 338, 494
TscAI	CASTG	2 cut(s)	226, 520
TseI	GCWGC	4 cut(s)	47, 50, 152, 455
TspDTI	ATGAA	4 cut(s)	29, 137, 233, 389
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	226, 520
XbaI	TCTAGA	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	160
XspI	CTAG	3 cut(s)	161, 213, 260
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.