Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Reverse (-)

18767892 .. 18771449

Gene Structure 3558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAACCCCAGAAGGTAGAAGCCCTTCAGATCAGTCTAGAATTAGGCCAAGCCCAAACTTCACCCCAATCCACCAAGGGCATCACAATTGCTGTAGGCCTTTGGACTCCTAGCCATGAATTGCAGGACAACCTGCGTCAACCACCACGGCATCACCATGGTTCCCCGCCTTCAAACCAAATTGGGAATGGCCTCGCCGGCCGTGAACTTAGCAACCCTCAAGAAAAACAAGAATATGAGGTCCTTGACTGGAACGACGGCCTTTCCGATCTTAGTCTCGCCGAAGGTGCAGTCACAGATGAGCTTGATTTGGATTTGGAGGACATCGAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.13

Weight (kDa)

4.43

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AciI	CCGC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	174
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	5 cut(s)	46, 97, 190, 199, 259
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	54, 146
AvaII	GGWCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BceAI	ACGGC	3 cut(s)	164, 186, 274
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	38, 111
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	90, 160
BpuEI	CTTGAG	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	75, 146, 157
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	75, 146, 157
BseNI	ACTGG	1 cut(s)	254
BseX3I	CGGCCG	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	5 cut(s)	48, 99, 192, 201, 261
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	5 cut(s)	48, 99, 192, 201, 261
Bsp143I	GATC	2 cut(s)	30, 268
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	5 cut(s)	48, 99, 192, 201, 261
BspLI	GGNNCC	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	75, 146, 157
BssMI	GATC	2 cut(s)	30, 268
BssT1I	CCWWGG	2 cut(s)	75, 157
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	209, 272
BstDSI	CCRYGG	2 cut(s)	146, 157
BstKTI	GATC	2 cut(s)	33, 271
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	30, 268
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 287
BstSFI	CTRYAG	1 cut(s)	93
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	5 cut(s)	48, 99, 192, 201, 261
BtgI	CCRYGG	2 cut(s)	146, 157
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	125
CviAII	CATG	2 cut(s)	116, 158
DdeI	CTNAG	2 cut(s)	209, 272
DpnI	GATC	2 cut(s)	32, 270
DpnII	GATC	2 cut(s)	30, 268
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	75, 157
Eco147I	AGGCCT	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	75, 157
ErhI	CCWWGG	2 cut(s)	75, 157
FaeI	CATG	2 cut(s)	119, 161
FaiI	YATR	3 cut(s)	117, 159, 237
FatI	CATG	2 cut(s)	115, 157
FauI	CCCGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	38, 111
HaeIII	GGCC	5 cut(s)	48, 99, 192, 201, 261
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	119, 161
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	2 cut(s)	54, 146
Hpy166II	GTNNAC	2 cut(s)	140, 206
Hpy188I	TCNGA	2 cut(s)	30, 268
Hpy188III	TCNNGA	2 cut(s)	38, 221
Hpy8I	GTNNAC	2 cut(s)	140, 206
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	4 cut(s)	7, 35, 180, 278
HpyCH4V	TGCA	2 cut(s)	124, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 287
HpyF3I	CTNAG	2 cut(s)	209, 272
Hsp92II	CATG	2 cut(s)	119, 161
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	30, 268
LpnPI	CCDG	5 cut(s)	23, 110, 146, 211, 235
LweI	GCATC	2 cut(s)	90, 160
MaeI	CTAG	2 cut(s)	38, 111
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	32, 270
MboI	GATC	2 cut(s)	30, 268
MfeI	CAATTG	1 cut(s)	87
MluCI	AATT	4 cut(s)	41, 87, 119, 180
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	203, 228, 232, 313, 322
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	198, 287
NaeI	GCCGGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	30, 268
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	119, 161
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	30, 268
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	100
SetI	ASST	5 cut(s)	18, 135, 243, 289, 306
SfaNI	GCATC	2 cut(s)	90, 160
SfcI	CTRYAG	1 cut(s)	93
SfiI	GGCCNNNNNGGCC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	41, 87, 119, 180
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	38, 111
StuI	AGGCCT	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	75, 157
TaqI	TCGA	1 cut(s)	327
TasI	AATT	4 cut(s)	41, 87, 119, 180
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	17, 132
VpaK11BI	GGWCC	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	2 cut(s)	38, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.