Rh7DG321200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002248
Physical Location & Seq
Reverse (-)
38299805 .. 38337042
37238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG321200.1

Sequence Viewer

Length: 918 bp
ATGTCTTATTCTACATCTGGGGAGCAACATGATCACTTGGATACTCCACCTCCACCACCCTTAGTATCGCCGCAATCCTCATCGCCGATTTGTTTCCGATTGCCGCGCAGAGTCGCCTCAAAATCCAAAATCGGTTCTGTCGATGACATCGCAGTTAATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCAGAGTTTGTGCTTGAGGCTCTGAGGAGAGAATGCCAAGAATTTGCAGCGCCGCAAAATTCGCACTTTAATGTCTATGCGAGGGTTGCAGACTTGGTTGATTGGTCTTCAACTTCTTGGAATCTGGATCCCATTACTCAGCATTTGACACCTGCTGAGGTCGTTGCTATTGAGTCCATCCCATTGTCCTCTACTTGGGAACCTGATAAGTTAGTCTGGCCTTTTGAGAAATGTGGTTCATATTCAGTCAGGGCTTGGAATTCAACAACCAAAAGAGCTGGGATTGGATGCATTATCAGAAATTTTACTGGTACAATTATTAATGGGAGAGTTAAAACCTGCTTGGCAAACTCTACTTTGCATGCGGAAGCTATTGCTGTCTTAGAGGGATTGACTTCAGCTAGAAATCTGGATTTCCCTTCGGAGGTCCTTGACCGGAACGAATGCCTTTCCGATCTTGGTCTCGCCGAAGGTGCGGTCACAGATGAGCTTGATTTTGATTTGGAGGCGGTCGAGGGCGGAGTTGTCGAGAGTGAACTTGAGGGTGTGGTTCCATTTGGGGTTGGTGCCGGCGTCTTTGTGGATGGGGGTGCGGAGCTTCTACTTCCTGACGCCGTTACCGGAGACGGAGACGACGACATAGACGTCCATCTTAGAGAACATGTTCACGCCCTTGATGTCATTTATGCCGAGCACCGTTATTTCCAAAGGTCTGCAATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

305

Amino Acids

33.27

Weight (kDa)

4.61

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
AasI GACNNNNNNGTC 1 cut(s) 836
AatII GACGTC 1 cut(s) 840
Acc36I ACCTGC 2 cut(s) 352, 539
AccB1I GGYRCC 1 cut(s) 758
AccII CGCG 1 cut(s) 106
AciI CCGC 8 cut(s) 71, 104, 245, 557, 668, 701, 711, 785
AclWI GGATC 2 cut(s) 314, 327
AcsI RAATTY 4 cut(s) 233, 250, 451, 493
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 3 cut(s) 765, 804, 837
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 3 cut(s) 183, 387, 616
AflIII ACRYGT 1 cut(s) 853
AgsI TTSAA 2 cut(s) 303, 456
AluBI AGCT 5 cut(s) 470, 563, 593, 682, 790
AluI AGCT 5 cut(s) 470, 563, 593, 682, 790
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 3 cut(s) 659, 810, 816
AlwI GGATC 2 cut(s) 314, 327
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 4 cut(s) 233, 250, 451, 493
ArsI GACNNNNNNTTYG 4 cut(s) 182, 214, 654, 686
AseI ATTAAT 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 2 cut(s) 108, 244
AspS9I GGNCC 1 cut(s) 619
AvaII GGWCC 1 cut(s) 619
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 888
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 251
BccI CCATC 3 cut(s) 377, 770, 849
BceAI ACGGC 1 cut(s) 791
BciVI GTATCC 1 cut(s) 34
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 659, 810, 816
BfaI CTAG 2 cut(s) 188, 594
BfoI RGCGCY 1 cut(s) 245
BfuAI ACCTGC 2 cut(s) 352, 539
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 4 cut(s) 71, 104, 240, 245
BlsI GCNGC 4 cut(s) 72, 105, 241, 246
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 4 cut(s) 321, 393, 744, 760
BmsI GCATC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 227, 752
BsaHI GRCGYC 3 cut(s) 765, 804, 837
BsaI GGTCTC 1 cut(s) 659
BsaWI WCCGGW 2 cut(s) 627, 812
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 387, 616
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 1 cut(s) 505
BseGI GGATG 3 cut(s) 369, 485, 781
BseLI CCNNNNNNNGG 3 cut(s) 183, 387, 616
BseMII CTCAG 4 cut(s) 206, 207, 339, 344
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 758
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 888
BsiSI CCGG 3 cut(s) 628, 762, 813
BslI CCNNNNNNNGG 3 cut(s) 183, 387, 616
BsmAI GTCTC 3 cut(s) 659, 810, 816
BsmBI CGTCTC 2 cut(s) 810, 816
BsmI GAATGC 2 cut(s) 230, 641
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 888
Bsp143I GATC 3 cut(s) 31, 319, 646
BspACI CCGC 8 cut(s) 71, 104, 245, 557, 668, 701, 711, 785
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 4 cut(s) 206, 207, 340, 343
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 4 cut(s) 321, 393, 744, 760
BspMI ACCTGC 2 cut(s) 352, 539
BspPI GGATC 2 cut(s) 314, 327
BspT107I GGYRCC 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 659
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 761
BssMI GATC 3 cut(s) 31, 319, 646
BssNI GRCGYC 3 cut(s) 765, 804, 837
Bst4CI ACNGT 1 cut(s) 890
BstACI GRCGYC 3 cut(s) 765, 804, 837
BstC8I GCNNGC 2 cut(s) 555, 763
BstDEI CTNAG 7 cut(s) 61, 193, 215, 330, 348, 574, 845
BstF5I GGATG 3 cut(s) 369, 485, 781
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 2 cut(s) 108, 244
BstKTI GATC 3 cut(s) 34, 322, 649
BstMAI GTCTC 3 cut(s) 659, 810, 816
BstMBI GATC 3 cut(s) 31, 319, 646
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 3 cut(s) 253, 278, 665
BstNSI RCATGY 2 cut(s) 557, 857
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 412
BtgZI GCGATG 2 cut(s) 66, 133
BtsCI GGATG 3 cut(s) 369, 485, 781
BveI ACCTGC 2 cut(s) 352, 539
Cac8I GCNNGC 2 cut(s) 555, 763
CfoI GCGC 2 cut(s) 108, 244
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 2 cut(s) 754, 812
Csp6I GTAC 1 cut(s) 504
CviAII CATG 3 cut(s) 29, 554, 854
CviJI RGCY 9 cut(s) 187, 212, 412, 446, 470, 563, 593, 682, 790
CviKI_1 RGCY 9 cut(s) 187, 212, 412, 446, 470, 563, 593, 682, 790
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 7 cut(s) 61, 193, 215, 330, 348, 574, 845
DpnI GATC 3 cut(s) 33, 321, 648
DpnII GATC 3 cut(s) 31, 319, 646
DrdI GACNNNNNNGTC 1 cut(s) 836
DseDI GACNNNNNNGTC 1 cut(s) 836
EciI GGCGGA 1 cut(s) 726
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 485
Esp3I CGTCTC 2 cut(s) 810, 816
FaeI CATG 3 cut(s) 32, 557, 857
FaiI YATR 7 cut(s) 30, 270, 433, 555, 833, 855, 879
FatI CATG 3 cut(s) 28, 553, 853
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 71, 104, 240, 245
FokI GGATG 3 cut(s) 356, 492, 788
Fsp4HI GCNGC 4 cut(s) 71, 104, 240, 245
FspBI CTAG 2 cut(s) 188, 594
GlaI GCGC 2 cut(s) 107, 243
GluI GCNGC 4 cut(s) 71, 104, 240, 245
GsaI CCCAGC 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 412
HapII CCGG 3 cut(s) 628, 762, 813
HgaI GACGC 2 cut(s) 754, 812
HhaI GCGC 2 cut(s) 108, 244
Hin1I GRCGYC 3 cut(s) 765, 804, 837
Hin1II CATG 3 cut(s) 32, 557, 857
Hin6I GCGC 2 cut(s) 106, 242
HinP1I GCGC 2 cut(s) 106, 242
HinfI GANTC 4 cut(s) 111, 191, 313, 365
HpaII CCGG 3 cut(s) 628, 762, 813
Hpy166II GTNNAC 2 cut(s) 728, 859
Hpy188I TCNGA 6 cut(s) 98, 196, 216, 491, 616, 646
Hpy188III TCNNGA 4 cut(s) 317, 602, 721, 800
Hpy8I GTNNAC 2 cut(s) 728, 859
Hpy99I CGWCG 1 cut(s) 830
HpyAV CCTTC 2 cut(s) 621, 656
HpyCH4III ACNGT 1 cut(s) 890
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 5 cut(s) 239, 281, 483, 553, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 278, 665
HpyF3I CTNAG 7 cut(s) 61, 193, 215, 330, 348, 574, 845
HpySE526I ACGT 1 cut(s) 837
Hsp92I GRCGYC 3 cut(s) 765, 804, 837
Hsp92II CATG 3 cut(s) 32, 557, 857
HspAI GCGC 2 cut(s) 106, 242
KroI GCCGGC 1 cut(s) 761
KroNI GCCGGC 1 cut(s) 763
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 319, 646
LmnI GCTCC 2 cut(s) 22, 787
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 470
MaeI CTAG 2 cut(s) 188, 594
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 2 cut(s) 670, 808
MalI GATC 3 cut(s) 33, 321, 648
MboI GATC 3 cut(s) 31, 319, 646
MboII GAAGA 1 cut(s) 291
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 888
MluCI AATT 5 cut(s) 233, 250, 451, 493, 507
MlyI GAGTC 3 cut(s) 120, 185, 374
Mph1103I ATGCAT 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 761
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 4 cut(s) 156, 261, 513, 525
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 3 cut(s) 628, 762, 813
Mva1269I GAATGC 2 cut(s) 230, 641
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 253, 278, 665
NaeI GCCGGC 1 cut(s) 763
NdeII GATC 3 cut(s) 31, 319, 646
NgoMIV GCCGGC 1 cut(s) 761
NlaIII CATG 3 cut(s) 32, 557, 857
NlaIV GGNNCC 4 cut(s) 321, 393, 744, 760
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 485
NspI RCATGY 2 cut(s) 557, 857
PaeI GCATGC 1 cut(s) 557
PaqCI CACCTGC 1 cut(s) 352
PciI ACATGT 1 cut(s) 853
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 825, 834
PctI GAATGC 2 cut(s) 230, 641
PdiI GCCGGC 1 cut(s) 763
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 4 cut(s) 72, 105, 241, 246
PleI GAGTC 3 cut(s) 119, 185, 373
PpsI GAGTC 3 cut(s) 119, 185, 373
PpuMI RGGWCCY 1 cut(s) 619
PscI ACATGT 1 cut(s) 853
PshBI ATTAAT 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 470
PspN4I GGNNCC 4 cut(s) 321, 393, 744, 760
PspPI GGNCC 1 cut(s) 619
PspPPI RGGWCCY 1 cut(s) 619
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 4 cut(s) 156, 261, 513, 525
SatI GCNGC 4 cut(s) 71, 104, 240, 245
Sau3AI GATC 3 cut(s) 31, 319, 646
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 3 cut(s) 120, 185, 374
SduI GDGCHC 1 cut(s) 888
SfaNI GCATC 1 cut(s) 470
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 206, 731
SmoI CTYRAG 2 cut(s) 206, 731
SphI GCATGC 1 cut(s) 557
Sse9I AATT 5 cut(s) 233, 250, 451, 493, 507
SsiI CCGC 8 cut(s) 71, 104, 245, 557, 668, 701, 711, 785
SspMI CTAG 2 cut(s) 188, 594
TaaI ACNGT 1 cut(s) 890
TaiI ACGT 1 cut(s) 840
TaqI TCGA 3 cut(s) 141, 705, 720
TasI AATT 5 cut(s) 233, 250, 451, 493, 507
TauI GCSGC 3 cut(s) 73, 106, 247
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 4 cut(s) 156, 261, 513, 525
Tru9I TTAA 4 cut(s) 156, 261, 513, 525
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 834
VpaK11BI GGWCC 1 cut(s) 619
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 4 cut(s) 233, 250, 451, 493
XceI RCATGY 2 cut(s) 557, 857
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 2 cut(s) 188, 594
ZraI GACGTC 1 cut(s) 838
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.