Rh4CG266900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002248
Physical Location & Seq
Reverse (-)
52133769 .. 52134086
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG266900.1

Sequence Viewer

Length: 318 bp
ATGCTTGTCGTTCTTCTCGTTTTGCAGGAGGTTCTTGACCGGAACGACGACCTTTCTGATCTTGGTCTCGTCGAAGGTGCGGTCACATATGAGCTTGATTTTGATTTGGAGGTGGTCGAGGGCGGAGTTGTCGAGGGTGAACTTGAGGGTGCGGAGCTTCTGCTTCCTGACGCTGTTACCGGAGACGGAGACAACAACGTAGACGTCCGTCTTGGAGAACATGTTCATGTCCTTGATGTCATTTGCGCCGAACACCGTTATTTCCAAAGGCCTTCCATTGATGATGAAGATCGAAAATATCGAATCGGATATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

4.05

Isoelectric Point (pI)

10.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 201
AciI CCGC 3 cut(s) 80, 123, 152
AcyI GRCGYC 1 cut(s) 204
AflIII ACRYGT 1 cut(s) 220
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 2 cut(s) 94, 157
AluI AGCT 2 cut(s) 94, 157
Alw26I GTCTC 3 cut(s) 71, 177, 183
AoxI GGCC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 149
BcoDI GTCTC 3 cut(s) 71, 177, 183
BoxI GACNNNNGTC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 71
BsaWI WCCGGW 2 cut(s) 39, 179
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse8I GATNNNNATC 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 288
BshFI GGCC 1 cut(s) 271
BsiSI CCGG 2 cut(s) 40, 180
BsmAI GTCTC 3 cut(s) 71, 177, 183
BsmBI CGTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 271
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 58, 289
BspACI CCGC 3 cut(s) 80, 123, 152
BspANI GGCC 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 71
BssMI GATC 2 cut(s) 58, 289
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 204
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 61, 292
BstMAI GTCTC 3 cut(s) 71, 177, 183
BstMBI GATC 2 cut(s) 58, 289
BstNSI RCATGY 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 271
CfoI GCGC 1 cut(s) 248
CseI GACGC 1 cut(s) 179
CviAII CATG 2 cut(s) 221, 227
CviJI RGCY 3 cut(s) 94, 157, 271
CviKI_1 RGCY 3 cut(s) 94, 157, 271
DpnI GATC 2 cut(s) 60, 291
DpnII GATC 2 cut(s) 58, 289
EciI GGCGGA 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 2 cut(s) 224, 230
FaiI YATR 4 cut(s) 88, 90, 222, 228
FatI CATG 2 cut(s) 220, 226
FauNDI CATATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 201
GlaI GCGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 271
HapII CCGG 2 cut(s) 40, 180
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 224, 230
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 1 cut(s) 303
HpaII CCGG 2 cut(s) 40, 180
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 140, 202
Hpy188I TCNGA 2 cut(s) 58, 308
Hpy188III TCNNGA 2 cut(s) 35, 167
Hpy8I GTNNAC 2 cut(s) 140, 202
Hpy99I CGWCG 2 cut(s) 50, 74
HpyAV CCTTC 2 cut(s) 68, 282
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 198, 204
HpyCH4V TGCA 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 198, 204
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 224, 230
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 58, 289
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 11, 53, 180, 193
MaeII ACGT 2 cut(s) 198, 204
MaeIII GTNAC 2 cut(s) 82, 175
MalI GATC 2 cut(s) 60, 291
MboI GATC 2 cut(s) 58, 289
MboII GAAGA 2 cut(s) 5, 299
MnlI CCTC 5 cut(s) 22, 103, 112, 127, 139
MroXI GAANNNNTTC 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 2 cut(s) 40, 180
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 58, 289
NlaIII CATG 2 cut(s) 224, 230
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 224
PceI AGGCCT 1 cut(s) 271
PciI ACATGT 1 cut(s) 220
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 298
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 303
PscI ACATGT 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 225
Sau3AI GATC 2 cut(s) 58, 289
SetI ASST 8 cut(s) 33, 54, 79, 96, 114, 159, 201, 207
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 3 cut(s) 80, 123, 152
StuI AGGCCT 1 cut(s) 271
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 2 cut(s) 201, 207
TaqI TCGA 5 cut(s) 72, 117, 132, 292, 301
TfiI GAWTC 1 cut(s) 303
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 215, 300
TspGWI ACGGA 2 cut(s) 197, 201
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 222
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.