pycom01g12030

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
12959015 .. 12959423
409 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g12030.1

Sequence Viewer

Length: 324 bp
ATGGACACAGACCTAGATTCAGAGGCTGCCAGGGCTAAAGAAGATGATAAGAATTTGTCCACCGATGCGTCTGAATTGGCTAATCTGTTGGATAGTGGCCAAATTAGTTTCATGTTTTGTGGCTTTTTCAAAGCCATGTTTTGTGGCTTTTTCAAAGCCATGTTTTGTGGTTTTTTCAAAGCCATGTTTTGTGGCTTTTTCAAAGCCATGTTTTGTGGGAGAAGGCTTGGATTAAGAAAAAAGAAGAGATGTAGAGCATCCAAAGTGAGGGTGAGAGCATTTGGCTCTACCATGAGCATGGGTGAGAGAAATCAAGAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.12

Weight (kDa)

9.35

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 4 cut(s) 130, 154, 178, 202
AjnI CCWGG 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 283, 314
BalI TGGCCA 1 cut(s) 99
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 55, 266
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 1 cut(s) 99
BspANI GGCC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 298
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 257
CaiI CAGNNNCTG 1 cut(s) 26
CseI GACGC 1 cut(s) 57
CviAII CATG 7 cut(s) 112, 136, 160, 184, 208, 292, 298
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 7 cut(s) 115, 139, 163, 187, 211, 295, 301
FaiI YATR 7 cut(s) 113, 137, 161, 185, 209, 293, 299
FatI CATG 7 cut(s) 111, 135, 159, 183, 207, 291, 297
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 99
HgaI GACGC 1 cut(s) 57
Hin1II CATG 7 cut(s) 115, 139, 163, 187, 211, 295, 301
HinfI GANTC 1 cut(s) 17
HphI GGTGA 2 cut(s) 283, 314
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 2 cut(s) 22, 73
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92II CATG 7 cut(s) 115, 139, 163, 187, 211, 295, 301
LpnPI CCDG 2 cut(s) 16, 43
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 55, 266
MaeI CTAG 1 cut(s) 14
MboII GAAGA 2 cut(s) 53, 256
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 52, 74, 102
MluNI TGGCCA 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 2 cut(s) 16, 261
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 32
NlaIII CATG 7 cut(s) 115, 139, 163, 187, 211, 295, 301
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 31
SetI ASST 1 cut(s) 15
SfaNI GCATC 2 cut(s) 55, 266
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 3 cut(s) 52, 74, 102
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 29
TasI AATT 3 cut(s) 52, 74, 102
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 100
XapI RAATTY 1 cut(s) 52
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.