subtilisin-like protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 770, 1430 |
| AccII | CGCG | 1 cut(s) | 89 |
| AccIII | TCCGGA | 1 cut(s) | 1183 |
| AciI | CCGC | 5 cut(s) | 87, 89, 822, 1338, 1557 |
| AclWI | GGATC | 5 cut(s) | 285, 1061, 1089, 1822, 2120 |
| AcoI | YGGCCR | 4 cut(s) | 84, 464, 789, 975 |
| AcsI | RAATTY | 4 cut(s) | 545, 653, 2056, 2289 |
| AcuI | CTGAAG | 2 cut(s) | 1299, 1392 |
| AfaI | GTAC | 2 cut(s) | 27, 2243 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 520, 1190, 1373, 1965, 2135 |
| AflIII | ACRYGT | 1 cut(s) | 1988 |
| AgsI | TTSAA | 9 cut(s) | 396, 484, 598, 634, 1008, 1202, 1412, 1483, 2176 |
| AhlI | ACTAGT | 1 cut(s) | 1759 |
| AjnI | CCWGG | 5 cut(s) | 63, 977, 1128, 1594, 1977 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1251, 1283 |
| Alw21I | GWGCWC | 2 cut(s) | 589, 1866 |
| Alw26I | GTCTC | 4 cut(s) | 1696, 1740, 1996, 2088 |
| Alw44I | GTGCAC | 1 cut(s) | 1862 |
| AlwI | GGATC | 5 cut(s) | 285, 1061, 1089, 1822, 2120 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 839, 1322 |
| Ama87I | CYCGRG | 3 cut(s) | 1542, 1663, 1885 |
| Aor13HI | TCCGGA | 1 cut(s) | 1183 |
| ApaLI | GTGCAC | 1 cut(s) | 1862 |
| ApoI | RAATTY | 4 cut(s) | 545, 653, 2056, 2289 |
| AspA2I | CCTAGG | 1 cut(s) | 496 |
| AspLEI | GCGC | 2 cut(s) | 1027, 1594 |
| AspS9I | GGNCC | 5 cut(s) | 500, 742, 1016, 1547, 1784 |
| AsuC2I | CCSGG | 2 cut(s) | 1886, 1887 |
| AsuHPI | GGTGA | 4 cut(s) | 381, 437, 551, 1038 |
| AsuNHI | GCTAGC | 1 cut(s) | 698 |
| AvaI | CYCGRG | 3 cut(s) | 1542, 1663, 1885 |
| AvaII | GGWCC | 3 cut(s) | 1016, 1547, 1784 |
| AvrII | CCTAGG | 1 cut(s) | 496 |
| BaeGI | GKGCMC | 2 cut(s) | 775, 1866 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1236, 1269, 2130, 2163 |
| BalI | TGGCCA | 2 cut(s) | 466, 977 |
| BanI | GGYRCC | 2 cut(s) | 770, 1430 |
| Bbv12I | GWGCWC | 2 cut(s) | 589, 1866 |
| BccI | CCATC | 9 cut(s) | 217, 422, 517, 596, 869, 938, 1007, 1669, 1795 |
| BceAI | ACGGC | 3 cut(s) | 90, 613, 776 |
| BciT130I | CCWGG | 5 cut(s) | 65, 979, 1130, 1596, 1979 |
| BciVI | GTATCC | 1 cut(s) | 1392 |
| BclI | TGATCA | 2 cut(s) | 156, 2335 |
| BcnI | CCSGG | 2 cut(s) | 1886, 1887 |
| BcoDI | GTCTC | 4 cut(s) | 1696, 1740, 1996, 2088 |
| BcuI | ACTAGT | 1 cut(s) | 1759 |
| BfaI | CTAG | 4 cut(s) | 354, 497, 699, 1760 |
| BfmI | CTRYAG | 2 cut(s) | 705, 1212 |
| BfuI | GTATCC | 1 cut(s) | 1392 |
| BlnI | CCTAGG | 1 cut(s) | 496 |
| BmcAI | AGTACT | 1 cut(s) | 27 |
| Bme1390I | CCNGG | 7 cut(s) | 65, 979, 1130, 1596, 1886, 1887, 1979 |
| Bme18I | GGWCC | 3 cut(s) | 1016, 1547, 1784 |
| BmeT110I | CYCGRG | 3 cut(s) | 1542, 1663, 1885 |
| BmgT120I | GGNCC | 5 cut(s) | 500, 742, 1016, 1547, 1784 |
| BmiI | GGNNCC | 4 cut(s) | 772, 961, 1432, 1548 |
| BmrFI | CCNGG | 7 cut(s) | 65, 979, 1130, 1596, 1886, 1887, 1979 |
| BmrI | ACTGGG | 1 cut(s) | 405 |
| BmsI | GCATC | 3 cut(s) | 661, 1633, 1732 |
| BmtI | GCTAGC | 1 cut(s) | 702 |
| BmuI | ACTGGG | 1 cut(s) | 405 |
| BpmI | CTGGAG | 2 cut(s) | 1212, 1722 |
| Bpu10I | CCTNAGC | 1 cut(s) | 832 |
| BpuEI | CTTGAG | 2 cut(s) | 1175, 1559 |
| BpuMI | CCSGG | 2 cut(s) | 1886, 1887 |
| Bsa29I | ATCGAT | 1 cut(s) | 1673 |
| BsaBI | GATNNNNATC | 1 cut(s) | 168 |
| BsaI | GGTCTC | 3 cut(s) | 1740, 1996, 2088 |
| BsaWI | WCCGGW | 1 cut(s) | 1183 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 870, 900, 1768, 1798 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 520, 1190, 1373, 1965, 2135 |
| Bse1I | ACTGG | 5 cut(s) | 411, 503, 521, 961, 1736 |
| Bse3DI | GCAATG | 3 cut(s) | 557, 562, 948 |
| Bse8I | GATNNNNATC | 1 cut(s) | 168 |
| BseAI | TCCGGA | 1 cut(s) | 1183 |
| BseBI | CCWGG | 5 cut(s) | 65, 979, 1130, 1596, 1979 |
| BseCI | ATCGAT | 1 cut(s) | 1673 |
| BseGI | GGATG | 5 cut(s) | 509, 934, 940, 1648, 1723 |
| BseJI | GATNNNNATC | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 520, 1190, 1373, 1965, 2135 |
| BseMI | GCAATG | 3 cut(s) | 557, 562, 948 |
| BseMII | CTCAG | 5 cut(s) | 398, 606, 846, 1707, 2065 |
| BseNI | ACTGG | 5 cut(s) | 411, 503, 521, 961, 1736 |
| BseRI | GAGGAG | 4 cut(s) | 372, 1674, 1700, 1809 |
| BseSI | GKGCMC | 2 cut(s) | 775, 1866 |
| BsgI | GTGCAG | 3 cut(s) | 315, 1020, 1929 |
| Bsh1236I | CGCG | 1 cut(s) | 89 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1291 |
| BshNI | GGYRCC | 2 cut(s) | 770, 1430 |
| BshVI | ATCGAT | 1 cut(s) | 1673 |
| BsiEI | CGRYCG | 1 cut(s) | 1291 |
| BsiHKAI | GWGCWC | 2 cut(s) | 589, 1866 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1542, 1663, 1885 |
| BsiSI | CCGG | 2 cut(s) | 1184, 1886 |
| BslFI | GGGAC | 4 cut(s) | 646, 769, 1560, 1977 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 520, 1190, 1373, 1965, 2135 |
| BsmAI | GTCTC | 4 cut(s) | 1696, 1740, 1996, 2088 |
| BsmFI | GGGAC | 4 cut(s) | 646, 769, 1560, 1977 |
| BsmI | GAATGC | 1 cut(s) | 1876 |
| Bso31I | GGTCTC | 3 cut(s) | 1740, 1996, 2088 |
| BsoBI | CYCGRG | 3 cut(s) | 1542, 1663, 1885 |
| Bsp1286I | GDGCHC | 3 cut(s) | 589, 775, 1866 |
| Bsp13I | TCCGGA | 1 cut(s) | 1183 |
| Bsp143I | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| Bsp19I | CCATGG | 1 cut(s) | 1938 |
| BspACI | CCGC | 5 cut(s) | 87, 89, 822, 1338, 1557 |
| BspCNI | CTCAG | 5 cut(s) | 397, 607, 845, 1706, 2064 |
| BspDI | ATCGAT | 1 cut(s) | 1673 |
| BspEI | TCCGGA | 1 cut(s) | 1183 |
| BspFNI | CGCG | 1 cut(s) | 89 |
| BspHI | TCATGA | 1 cut(s) | 172 |
| BspLI | GGNNCC | 4 cut(s) | 772, 961, 1432, 1548 |
| BspMAI | CTGCAG | 1 cut(s) | 709 |
| BspOI | GCTAGC | 1 cut(s) | 702 |
| BspPI | GGATC | 5 cut(s) | 285, 1061, 1089, 1822, 2120 |
| BspT107I | GGYRCC | 2 cut(s) | 770, 1430 |
| BspTNI | GGTCTC | 3 cut(s) | 1740, 1996, 2088 |
| BsrDI | GCAATG | 3 cut(s) | 557, 562, 948 |
| BsrI | ACTGG | 5 cut(s) | 411, 503, 521, 961, 1736 |
| BssMI | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| BssT1I | CCWWGG | 5 cut(s) | 496, 745, 1049, 1521, 1938 |
| Bst2UI | CCWGG | 5 cut(s) | 65, 979, 1130, 1596, 1979 |
| BstC8I | GCNNGC | 6 cut(s) | 183, 700, 1072, 1336, 1508, 2280 |
| BstDEI | CTNAG | 6 cut(s) | 93, 384, 615, 832, 1693, 2051 |
| BstDSI | CCRYGG | 4 cut(s) | 87, 1077, 1938, 2181 |
| BstF5I | GGATG | 5 cut(s) | 509, 934, 940, 1648, 1723 |
| BstFNI | CGCG | 1 cut(s) | 89 |
| BstHHI | GCGC | 2 cut(s) | 1027, 1594 |
| BstKTI | GATC | 9 cut(s) | 159, 280, 1056, 1084, 1457, 1754, 1817, 2128, 2338 |
| BstMAI | GTCTC | 4 cut(s) | 1696, 1740, 1996, 2088 |
| BstMBI | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| BstMCI | CGRYCG | 1 cut(s) | 1291 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 704, 779, 788, 828, 1319, 1344, 1526, 1565 |
| BstNI | CCWGG | 5 cut(s) | 65, 979, 1130, 1596, 1979 |
| BstNSI | RCATGY | 3 cut(s) | 1924, 1992, 2282 |
| BstSCI | CCNGG | 7 cut(s) | 63, 977, 1128, 1594, 1884, 1885, 1977 |
| BstSFI | CTRYAG | 2 cut(s) | 705, 1212 |
| BstSLI | GKGCMC | 2 cut(s) | 775, 1866 |
| BstUI | CGCG | 1 cut(s) | 89 |
| BstX2I | RGATCY | 1 cut(s) | 1814 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 516, 2167 |
| BstYI | RGATCY | 1 cut(s) | 1814 |
| Bsu15I | ATCGAT | 1 cut(s) | 1673 |
| BsuI | GTATCC | 1 cut(s) | 1392 |
| BsuTUI | ATCGAT | 1 cut(s) | 1673 |
| BtgI | CCRYGG | 4 cut(s) | 87, 1077, 1938, 2181 |
| BtsCI | GGATG | 5 cut(s) | 509, 934, 940, 1648, 1723 |
| BtsI | GCAGTG | 3 cut(s) | 693, 702, 1718 |
| BtsIMutI | CAGTG | 7 cut(s) | 87, 514, 693, 702, 1718, 2148, 2338 |
| Cac8I | GCNNGC | 6 cut(s) | 183, 700, 1072, 1336, 1508, 2280 |
| CaiI | CAGNNNCTG | 2 cut(s) | 839, 1322 |
| CciI | TCATGA | 1 cut(s) | 172 |
| CfoI | GCGC | 2 cut(s) | 1027, 1594 |
| Cfr13I | GGNCC | 5 cut(s) | 500, 742, 1016, 1547, 1784 |
| Cfr42I | CCGCGG | 1 cut(s) | 90 |
| Cfr9I | CCCGGG | 1 cut(s) | 1885 |
| ClaI | ATCGAT | 1 cut(s) | 1673 |
| Csp6I | GTAC | 2 cut(s) | 26, 2242 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 63, 98, 175, 210 |
| CviQI | GTAC | 2 cut(s) | 26, 2242 |
| DdeI | CTNAG | 6 cut(s) | 93, 384, 615, 832, 1693, 2051 |
| DpnI | GATC | 9 cut(s) | 158, 279, 1055, 1083, 1456, 1753, 1816, 2127, 2337 |
| DpnII | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| EaeI | YGGCCR | 4 cut(s) | 84, 464, 789, 975 |
| Eco130I | CCWWGG | 5 cut(s) | 496, 745, 1049, 1521, 1938 |
| Eco147I | AGGCCT | 1 cut(s) | 495 |
| Eco31I | GGTCTC | 3 cut(s) | 1740, 1996, 2088 |
| Eco32I | GATATC | 1 cut(s) | 1466 |
| Eco47I | GGWCC | 3 cut(s) | 1016, 1547, 1784 |
| Eco57I | CTGAAG | 2 cut(s) | 1299, 1392 |
| Eco88I | CYCGRG | 3 cut(s) | 1542, 1663, 1885 |
| EcoO109I | RGGNCCY | 1 cut(s) | 742 |
| EcoRI | GAATTC | 2 cut(s) | 653, 2289 |
| EcoRII | CCWGG | 5 cut(s) | 63, 977, 1128, 1594, 1977 |
| EcoRV | GATATC | 1 cut(s) | 1466 |
| EcoT14I | CCWWGG | 5 cut(s) | 496, 745, 1049, 1521, 1938 |
| EcoT22I | ATGCAT | 1 cut(s) | 1926 |
| ErhI | CCWWGG | 5 cut(s) | 496, 745, 1049, 1521, 1938 |
| FaqI | GGGAC | 4 cut(s) | 646, 769, 1560, 1977 |
| FbaI | TGATCA | 2 cut(s) | 156, 2335 |
| FokI | GGATG | 5 cut(s) | 496, 941, 947, 1655, 1710 |
| FspBI | CTAG | 4 cut(s) | 354, 497, 699, 1760 |
| GlaI | GCGC | 2 cut(s) | 1026, 1593 |
| GsuI | CTGGAG | 2 cut(s) | 1212, 1722 |
| HapII | CCGG | 2 cut(s) | 1184, 1886 |
| HhaI | GCGC | 2 cut(s) | 1027, 1594 |
| Hin6I | GCGC | 2 cut(s) | 1025, 1592 |
| HinP1I | GCGC | 2 cut(s) | 1025, 1592 |
| HincII | GTYRAC | 2 cut(s) | 1417, 1830 |
| HindII | GTYRAC | 2 cut(s) | 1417, 1830 |
| HindIII | AAGCTT | 3 cut(s) | 266, 852, 1171 |
| HinfI | GANTC | 8 cut(s) | 164, 318, 470, 533, 1187, 1226, 1363, 1631 |
| HpaII | CCGG | 2 cut(s) | 1184, 1886 |
| HphI | GGTGA | 4 cut(s) | 381, 437, 551, 1038 |
| Hpy166II | GTNNAC | 8 cut(s) | 112, 796, 1146, 1417, 1603, 1796, 1830, 1864 |
| Hpy188I | TCNGA | 9 cut(s) | 57, 217, 584, 643, 928, 1038, 1454, 2054, 2190 |
| Hpy188III | TCNNGA | 9 cut(s) | 173, 252, 834, 898, 1184, 1191, 1257, 1665, 2203 |
| Hpy8I | GTNNAC | 8 cut(s) | 112, 796, 1146, 1417, 1603, 1796, 1830, 1864 |
| HpyAV | CCTTC | 8 cut(s) | 53, 402, 485, 514, 1029, 1367, 2016, 2040 |
| HpyCH4IV | ACGT | 2 cut(s) | 589, 940 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 704, 779, 788, 828, 1319, 1344, 1526, 1565 |
| HpyF3I | CTNAG | 6 cut(s) | 93, 384, 615, 832, 1693, 2051 |
| HpySE526I | ACGT | 2 cut(s) | 589, 940 |
| HspAI | GCGC | 2 cut(s) | 1025, 1592 |
| Kpn2I | TCCGGA | 1 cut(s) | 1183 |
| Ksp22I | TGATCA | 2 cut(s) | 156, 2335 |
| KspI | CCGCGG | 1 cut(s) | 90 |
| Kzo9I | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| LmnI | GCTCC | 3 cut(s) | 584, 836, 965 |
| LweI | GCATC | 3 cut(s) | 661, 1633, 1732 |
| MaeI | CTAG | 4 cut(s) | 354, 497, 699, 1760 |
| MaeII | ACGT | 2 cut(s) | 589, 940 |
| MaeIII | GTNAC | 9 cut(s) | 233, 387, 721, 734, 891, 1303, 1762, 2068, 2080 |
| MalI | GATC | 9 cut(s) | 158, 279, 1055, 1083, 1456, 1753, 1816, 2127, 2337 |
| MboI | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| MboII | GAAGA | 2 cut(s) | 398, 500 |
| MfeI | CAATTG | 2 cut(s) | 1497, 2121 |
| MflI | RGATCY | 1 cut(s) | 1814 |
| MhlI | GDGCHC | 3 cut(s) | 589, 775, 1866 |
| MlsI | TGGCCA | 2 cut(s) | 466, 977 |
| MluNI | TGGCCA | 2 cut(s) | 466, 977 |
| MlyI | GAGTC | 3 cut(s) | 327, 479, 1196 |
| MmeI | TCCRAC | 2 cut(s) | 175, 1391 |
| Mox20I | TGGCCA | 2 cut(s) | 466, 977 |
| Mph1103I | ATGCAT | 1 cut(s) | 1926 |
| MroI | TCCGGA | 1 cut(s) | 1183 |
| MscI | TGGCCA | 2 cut(s) | 466, 977 |
| MseI | TTAA | 3 cut(s) | 549, 1239, 2022 |
| MslI | CAYNNNNRTG | 2 cut(s) | 681, 1869 |
| Msp20I | TGGCCA | 2 cut(s) | 466, 977 |
| MspA1I | CMGCKG | 3 cut(s) | 89, 710, 1319 |
| MspI | CCGG | 2 cut(s) | 1184, 1886 |
| MspR9I | CCNGG | 7 cut(s) | 65, 979, 1130, 1596, 1886, 1887, 1979 |
| MunI | CAATTG | 2 cut(s) | 1497, 2121 |
| Mva1269I | GAATGC | 1 cut(s) | 1876 |
| MvaI | CCWGG | 5 cut(s) | 65, 979, 1130, 1596, 1979 |
| MvnI | CGCG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 704, 779, 788, 828, 1319, 1344, 1526, 1565 |
| NciI | CCSGG | 2 cut(s) | 1886, 1887 |
| NcoI | CCATGG | 1 cut(s) | 1938 |
| NdeII | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| NheI | GCTAGC | 1 cut(s) | 698 |
| NlaIV | GGNNCC | 4 cut(s) | 772, 961, 1432, 1548 |
| NmeAIII | GCCGAG | 1 cut(s) | 1834 |
| NmuCI | GTSAC | 5 cut(s) | 387, 721, 891, 1762, 2080 |
| NsiI | ATGCAT | 1 cut(s) | 1926 |
| NspI | RCATGY | 3 cut(s) | 1924, 1992, 2282 |
| PaeI | GCATGC | 1 cut(s) | 2282 |
| PagI | TCATGA | 1 cut(s) | 172 |
| PceI | AGGCCT | 1 cut(s) | 495 |
| PciI | ACATGT | 1 cut(s) | 1988 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1670 |
| PctI | GAATGC | 1 cut(s) | 1876 |
| PfeI | GAWTC | 5 cut(s) | 164, 533, 1226, 1363, 1631 |
| PleI | GAGTC | 3 cut(s) | 326, 478, 1195 |
| PpsI | GAGTC | 3 cut(s) | 326, 478, 1195 |
| PscI | ACATGT | 1 cut(s) | 1988 |
| Psp6I | CCWGG | 5 cut(s) | 63, 977, 1128, 1594, 1977 |
| PspGI | CCWGG | 5 cut(s) | 63, 977, 1128, 1594, 1977 |
| PspN4I | GGNNCC | 4 cut(s) | 772, 961, 1432, 1548 |
| PspPI | GGNCC | 5 cut(s) | 500, 742, 1016, 1547, 1784 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2225, 2257 |
| PstI | CTGCAG | 1 cut(s) | 709 |
| PstNI | CAGNNNCTG | 2 cut(s) | 839, 1322 |
| PsuI | RGATCY | 1 cut(s) | 1814 |
| PvuII | CAGCTG | 2 cut(s) | 710, 1319 |
| RsaI | GTAC | 2 cut(s) | 27, 2243 |
| RsaNI | GTAC | 2 cut(s) | 26, 2242 |
| RseI | CAYNNNNRTG | 2 cut(s) | 681, 1869 |
| SacII | CCGCGG | 1 cut(s) | 90 |
| SaqAI | TTAA | 3 cut(s) | 549, 1239, 2022 |
| Sau3AI | GATC | 9 cut(s) | 156, 277, 1053, 1081, 1454, 1751, 1814, 2125, 2335 |
| Sau96I | GGNCC | 5 cut(s) | 500, 742, 1016, 1547, 1784 |
| ScaI | AGTACT | 1 cut(s) | 27 |
| SchI | GAGTC | 3 cut(s) | 327, 479, 1196 |
| ScrFI | CCNGG | 7 cut(s) | 65, 979, 1130, 1596, 1886, 1887, 1979 |
| SduI | GDGCHC | 3 cut(s) | 589, 775, 1866 |
| SfaNI | GCATC | 3 cut(s) | 661, 1633, 1732 |
| SfcI | CTRYAG | 2 cut(s) | 705, 1212 |
| Sfr303I | CCGCGG | 1 cut(s) | 90 |
| SgrBI | CCGCGG | 1 cut(s) | 90 |
| SinI | GGWCC | 3 cut(s) | 1016, 1547, 1784 |
| SmaI | CCCGGG | 1 cut(s) | 1887 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 681, 1869 |
| SmlI | CTYRAG | 2 cut(s) | 1154, 1574 |
| SmoI | CTYRAG | 2 cut(s) | 1154, 1574 |
| SpeI | ACTAGT | 1 cut(s) | 1759 |
| SphI | GCATGC | 1 cut(s) | 2282 |
| SseBI | AGGCCT | 1 cut(s) | 495 |
| SsiI | CCGC | 5 cut(s) | 87, 89, 822, 1338, 1557 |
| SspI | AATATT | 2 cut(s) | 403, 1515 |
| SspMI | CTAG | 4 cut(s) | 354, 497, 699, 1760 |
| StuI | AGGCCT | 1 cut(s) | 495 |
| StyD4I | CCNGG | 7 cut(s) | 63, 977, 1128, 1594, 1884, 1885, 1977 |
| StyI | CCWWGG | 5 cut(s) | 496, 745, 1049, 1521, 1938 |
| TaiI | ACGT | 2 cut(s) | 592, 943 |
| TaqI | TCGA | 8 cut(s) | 316, 784, 899, 1084, 1673, 1750, 1842, 2202 |
| TaqII | GACCGA | 1 cut(s) | 1277 |
| TatI | WGTACW | 1 cut(s) | 25 |
| TauI | GCSGC | 2 cut(s) | 89, 92 |
| TfiI | GAWTC | 5 cut(s) | 164, 533, 1226, 1363, 1631 |
| Tru1I | TTAA | 3 cut(s) | 549, 1239, 2022 |
| Tru9I | TTAA | 3 cut(s) | 549, 1239, 2022 |
| TscAI | CASTG | 6 cut(s) | 87, 521, 700, 709, 1725, 2148 |
| TseFI | GTSAC | 5 cut(s) | 387, 721, 891, 1762, 2080 |
| Tsp45I | GTSAC | 5 cut(s) | 387, 721, 891, 1762, 2080 |
| TspDTI | ATGAA | 9 cut(s) | 501, 646, 876, 951, 956, 1527, 1623, 2127, 2246 |
| TspGWI | ACGGA | 4 cut(s) | 176, 287, 1094, 2095 |
| TspMI | CCCGGG | 1 cut(s) | 1885 |
| TspRI | CASTG | 6 cut(s) | 87, 521, 700, 709, 1725, 2148 |
| VneI | GTGCAC | 1 cut(s) | 1862 |
| VpaK11BI | GGWCC | 3 cut(s) | 1016, 1547, 1784 |
| XapI | RAATTY | 4 cut(s) | 545, 653, 2056, 2289 |
| XceI | RCATGY | 3 cut(s) | 1924, 1992, 2282 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 418 |
| XmaI | CCCGGG | 1 cut(s) | 1885 |
| XmaJI | CCTAGG | 1 cut(s) | 496 |
| XspI | CTAG | 4 cut(s) | 354, 497, 699, 1760 |
| ZrmI | AGTACT | 1 cut(s) | 27 |
| Zsp2I | ATGCAT | 1 cut(s) | 1926 |