Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001127

Physical Location & Seq

Genomic Coordinates Reverse (-)

61999491 .. 62000376

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTCAAAGCTTTTGATGAAGCCATACATGATGGGGTTGATGCGTTGTCGATCACTATCCATTGGGAACTTCATTCCTACGTTTGCAGAGTCCTTTGTTTCACAACCGCGGCTGGGGCAGCTCTGGTGGCAAGTGCTGCATCTGCTGTTAGAAGGGCCGGTGGAGTAGGGGTGATTGTTGCAAAGCATCCGAATAATCGCTTGACTCCATGCAGCAATGACTTCCCATGTGTTGTAGTAGATTATGAGCTTGGGACGCAGATATTGTTTTACATTCGTTTCACCAGATCTCCTGTAGTAAAATTGAGCCCTTCTAAGACACTAGTGAGGAAGCCTGTATCAAGCAATGTTGCCTACTTCTCTTCCAGAGGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

126

Amino Acids

13.47

Weight (kDa)

9.27

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32940 AT1G32940 AT1G32940 AT1G32940 AT1G32950 AT1G32950 AT1G32960 AT4G10510 AT4G10510 AT4G10510 AT4G10510 AT4G10520 AT4G10530 AT4G10540 AT4G10550 AT4G10550 AT4G10550 AT4G10550
fragaria_vesca	FvH4_5g10490 FvH4_5g10502
malus_domestica	MD00G1035000.v1.1
prunus_persica	Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133600_v2.0.a1 Prupe.5G133700_v2.0.a1
pyrus_communis	pycom01g12030 pycom14g11430 pycom14g11440 pycom14g11450 pycom14g11470 pycom14g11480 pycom14g11520
rosa_chinensis	RchiOBHm_Chr4g0389671 RchiOBHm_Chr7g0187621 RchiOBHm_Chr7g0187651
rosa_laevigata	RLG00000004761 RLG00000004765
rosa_multiflora	Rmu_sc0003144.1_g000021 Rmu_sc0004483.1_g000012 Rmu_ssc0000110.1_g000014
rosa_roxburghii	Rroxscaffold_3G00267240
rosa_rugosa	Rorug06G0483200
rosa_samantha	Rh4AG029600 Rh4BG022700 Rh7AG088100 Rh7AG088500 Rh7BG089400 Rh7BG089900 Rh7BG090200 Rh7CG088700 Rh7CG089100 Rh7DG090400 Rh7DG090700
rosa_wichuraiana	Rw0G002650 Rw4G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AciI	CCGC	2 cut(s)	108, 110
AfiI	CCNNNNNNNGG	1 cut(s)	114
AhlI	ACTAGT	1 cut(s)	322
AluBI	AGCT	3 cut(s)	11, 122, 250
AluI	AGCT	3 cut(s)	11, 122, 250
AoxI	GGCC	2 cut(s)	156, 372
ApeKI	GCWGC	3 cut(s)	119, 137, 213
AspS9I	GGNCC	2 cut(s)	156, 372
AsuHPI	GGTGA	2 cut(s)	184, 274
BanII	GRGCYC	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	124, 131, 225
BccI	CCATC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	294
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	4 cut(s)	111, 120, 138, 214
BlsI	GCNGC	4 cut(s)	112, 121, 139, 215
BmgT120I	GGNCC	2 cut(s)	156, 372
BmiI	GGNNCC	1 cut(s)	373
BmsI	GCATC	3 cut(s)	31, 149, 196
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	2 cut(s)	223, 352
Bse8I	GATNNNNATC	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	2 cut(s)	223, 352
BseXI	GCAGC	3 cut(s)	124, 131, 225
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	158, 374
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	158, 374
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	51, 287
BspACI	CCGC	2 cut(s)	108, 110
BspANI	GGCC	2 cut(s)	158, 374
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	223, 352
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	51, 287
Bst6I	CTCTTC	1 cut(s)	367
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	54, 290
BstMBI	GATC	2 cut(s)	51, 287
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 119, 128, 137, 143, 256
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	124, 131, 225
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	158, 374
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	156, 372
Cfr42I	CCGCGG	1 cut(s)	111
CseI	GACGC	1 cut(s)	265
CviAII	CATG	3 cut(s)	29, 210, 228
CviJI	RGCY	9 cut(s)	11, 23, 113, 122, 158, 250, 309, 334, 374
CviKI_1	RGCY	9 cut(s)	11, 23, 113, 122, 158, 250, 309, 334, 374
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	53, 289
DpnII	GATC	2 cut(s)	51, 287
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	311
FaeI	CATG	3 cut(s)	32, 213, 231
FaiI	YATR	5 cut(s)	26, 30, 211, 229, 246
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	3 cut(s)	28, 209, 227
Fnu4HI	GCNGC	4 cut(s)	111, 120, 138, 214
FokI	GGATG	1 cut(s)	174
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	111, 120, 138, 214
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	4 cut(s)	111, 120, 138, 214
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	158, 374
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	32, 213, 231
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	90, 205
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	184, 274
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	366
HpyAV	CCTTC	2 cut(s)	147, 321
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	87, 140, 182, 213
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 119, 128, 137, 143, 256
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	32, 213, 231
KspI	CCGCGG	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	51, 287
LpnPI	CCDG	6 cut(s)	99, 110, 172, 298, 306, 348
Lsp1109I	GCAGC	3 cut(s)	124, 131, 225
LweI	GCATC	3 cut(s)	31, 149, 196
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	81
MalI	GATC	2 cut(s)	53, 289
MboI	GATC	2 cut(s)	51, 287
MboII	GAAGA	1 cut(s)	354
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	99, 199
MnlI	CCTC	2 cut(s)	321, 362
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	6 cut(s)	116, 119, 128, 137, 143, 256
NdeII	GATC	2 cut(s)	51, 287
NlaIII	CATG	3 cut(s)	32, 213, 231
NlaIV	GGNNCC	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	112, 121, 139, 215
PleI	GAGTC	2 cut(s)	98, 199
PpsI	GAGTC	2 cut(s)	98, 199
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	156, 372
PsuI	RGATCY	1 cut(s)	287
SacII	CCGCGG	1 cut(s)	111
SatI	GCNGC	4 cut(s)	111, 120, 138, 214
Sau3AI	GATC	2 cut(s)	51, 287
Sau96I	GGNCC	2 cut(s)	156, 372
SchI	GAGTC	2 cut(s)	99, 199
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	4 cut(s)	13, 84, 124, 252
SfaNI	GCATC	3 cut(s)	31, 149, 196
SfcI	CTRYAG	1 cut(s)	294
Sfr303I	CCGCGG	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	111
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	108, 110
SspMI	CTAG	1 cut(s)	323
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	50
TasI	AATT	1 cut(s)	302
TauI	GCSGC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	119, 137, 213
TspDTI	ATGAA	2 cut(s)	33, 62
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.