Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001127

Physical Location & Seq

Genomic Coordinates Forward (+)

6689343 .. 6690286

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG090200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGACATGGCACACACACATCCACAATTGCAGCTGGTTCCTTTGTGGCCAATGCAAGTTACAAAGGCCTCGGACTAGGATTAGCCCACGGTGGGGGTGCACCCCACGCTCATTTGGCTGTGTACAAGGTATGCTGGTTTGCACCAGTTTCAATGTGTGCTGCTGAAGATATGCTGAAAGCTTTTGATGAAGCCATACATGATGGGGTTGAGGTTGATAATCGTGACGCAATTGCCACGGGCTCATTCCATGCAGTGGCCAAGGGTATAACTGTTGTATGCGCTGCAGATAATACCGGACCTTCTCCTCAGACAGTTGGGATTGTAGCACCATGGATCATAACTGTAGCATCAAGTGCTACATCTGCTGTGAGAAGGACAGGTGGAGTTGGGGTGATTGTTGCAAAGCATCCGAATAATCGCTTGACTCCATGCAGCAATGACTTCCCATATGTTATAGTAGACTATGAACTTGGGACGCAGATATTGTTTTACATTCATTCCACCAGTTTCGAGTCAACTAATTTATGGCTGTGTGTTGAGACAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

183

Amino Acids

19.07

Weight (kDa)

5.93

Isoelectric Point (pI)

19.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	2 - 152	2.9e-07	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32940 AT1G32940 AT1G32940 AT1G32940 AT1G32950 AT1G32950 AT1G32960 AT4G10510 AT4G10510 AT4G10510 AT4G10510 AT4G10520 AT4G10530 AT4G10540 AT4G10550 AT4G10550 AT4G10550 AT4G10550
fragaria_vesca	FvH4_5g10490 FvH4_5g10502
malus_domestica	MD00G1035000.v1.1
prunus_persica	Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133500_v2.0.a1 Prupe.5G133600_v2.0.a1 Prupe.5G133700_v2.0.a1
pyrus_communis	pycom01g12030 pycom14g11430 pycom14g11440 pycom14g11450 pycom14g11470 pycom14g11480 pycom14g11520
rosa_chinensis	RchiOBHm_Chr4g0389671 RchiOBHm_Chr7g0187621 RchiOBHm_Chr7g0187651
rosa_laevigata	RLG00000004761 RLG00000004765
rosa_multiflora	Rmu_sc0003144.1_g000021 Rmu_sc0004483.1_g000012 Rmu_ssc0000110.1_g000014
rosa_roxburghii	Rroxscaffold_3G00267240
rosa_rugosa	Rorug06G0483200
rosa_samantha	Rh4AG029600 Rh4BG022700 Rh7AG088100 Rh7AG088500 Rh7BG089400 Rh7BG089900 Rh7BG090200 Rh7CG088700 Rh7CG089100 Rh7DG090400 Rh7DG090700
rosa_wichuraiana	Rw0G002650 Rw4G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	462
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	2 cut(s)	48, 258
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	93, 94, 256
AgsI	TTSAA	1 cut(s)	153
AluBI	AGCT	2 cut(s)	35, 182
AluI	AGCT	2 cut(s)	35, 182
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	3 cut(s)	48, 67, 258
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	32, 161, 284, 435
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	103
BalI	TGGCCA	2 cut(s)	50, 260
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	4 cut(s)	44, 148, 271, 447
BccI	CCATC	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	2 cut(s)	285, 345
BisI	GCNGC	4 cut(s)	33, 162, 285, 436
BlsI	GCNGC	4 cut(s)	34, 163, 286, 437
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	2 cut(s)	359, 418
BsaJI	CCNNGG	5 cut(s)	70, 88, 237, 261, 332
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 94, 256
Bse1I	ACTGG	2 cut(s)	146, 507
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	5 cut(s)	70, 88, 237, 261, 332
BseGI	GGATG	2 cut(s)	20, 409
BseLI	CCNNNNNNNGG	3 cut(s)	93, 94, 256
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	146, 507
BseRI	GAGGAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	44, 148, 271, 447
BshFI	GGCC	3 cut(s)	50, 69, 260
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	18, 490
BslI	CCNNNNNNNGG	3 cut(s)	93, 94, 256
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	2 cut(s)	18, 490
BsnI	GGCC	3 cut(s)	50, 69, 260
Bsp1286I	GDGCHC	2 cut(s)	103, 245
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	332
BspANI	GGCC	3 cut(s)	50, 69, 260
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	146, 507
BssECI	CCNNGG	5 cut(s)	70, 88, 237, 261, 332
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	261, 332
Bst4CI	ACNGT	4 cut(s)	92, 274, 316, 346
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	3 cut(s)	88, 237, 332
BstF5I	GGATG	2 cut(s)	20, 409
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 116, 356, 365
BstSFI	CTRYAG	2 cut(s)	285, 345
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	44, 148, 271, 447
BsuRI	GGCC	3 cut(s)	50, 69, 260
BtgI	CCRYGG	3 cut(s)	88, 237, 332
BtsCI	GGATG	2 cut(s)	20, 409
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	2 cut(s)	236, 487
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	5 cut(s)	8, 200, 251, 333, 432
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	48, 258
Eco130I	CCWWGG	2 cut(s)	261, 332
Eco147I	AGGCCT	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	261, 332
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	261, 332
FaeI	CATG	5 cut(s)	11, 203, 254, 336, 435
FaqI	GGGAC	2 cut(s)	18, 490
FatI	CATG	5 cut(s)	7, 199, 250, 332, 431
FauNDI	CATATG	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	4 cut(s)	33, 162, 285, 436
FokI	GGATG	2 cut(s)	7, 396
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	33, 162, 285, 436
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	4 cut(s)	33, 162, 285, 436
HaeIII	GGCC	3 cut(s)	50, 69, 260
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	2 cut(s)	236, 487
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	5 cut(s)	11, 203, 254, 336, 435
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	2 cut(s)	427, 515
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	4 cut(s)	101, 124, 463, 519
Hpy188I	TCNGA	3 cut(s)	74, 312, 414
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	4 cut(s)	101, 124, 463, 519
HpyAV	CCTTC	2 cut(s)	312, 369
HpyCH4III	ACNGT	4 cut(s)	92, 274, 316, 346
HpyCH4V	TGCA	8 cut(s)	32, 56, 101, 143, 254, 287, 404, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 116, 356, 365
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	11, 203, 254, 336, 435
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	6 cut(s)	21, 121, 159, 310, 366, 520
Lsp1109I	GCAGC	4 cut(s)	44, 148, 271, 447
LweI	GCATC	2 cut(s)	359, 418
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	59, 224
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	179
MfeI	CAATTG	2 cut(s)	27, 231
MhlI	GDGCHC	2 cut(s)	103, 245
MlsI	TGGCCA	2 cut(s)	50, 260
MluCI	AATT	3 cut(s)	27, 231, 523
MluNI	TGGCCA	2 cut(s)	50, 260
MlyI	GAGTC	2 cut(s)	421, 524
MnlI	CCTC	3 cut(s)	80, 205, 318
Mox20I	TGGCCA	2 cut(s)	50, 260
MscI	TGGCCA	2 cut(s)	50, 260
Msp20I	TGGCCA	2 cut(s)	50, 260
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	297
MunI	CAATTG	2 cut(s)	27, 231
MwoI	GCNNNNNNNGC	4 cut(s)	107, 116, 356, 365
NcoI	CCATGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	5 cut(s)	11, 203, 254, 336, 435
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	34, 163, 286, 437
PleI	GAGTC	2 cut(s)	421, 523
PpsI	GAGTC	2 cut(s)	421, 523
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	4 cut(s)	33, 162, 285, 436
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	421, 524
SduI	GDGCHC	2 cut(s)	103, 245
SetI	ASST	6 cut(s)	37, 132, 184, 216, 304, 385
SfaNI	GCATC	2 cut(s)	359, 418
SfcI	CTRYAG	2 cut(s)	285, 345
SinI	GGWCC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	27, 231, 523
SseBI	AGGCCT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	261, 332
TaaI	ACNGT	4 cut(s)	92, 274, 316, 346
TaqI	TCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	27, 231, 523
TatI	WGTACW	1 cut(s)	123
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	32, 161, 284, 435
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	204, 483, 488
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	256
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.