Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Forward (+)

20597372 .. 20599875

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18610.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGCACTTCATATTCTTCATGCTTTCATTCCACCACACTCTGTACTCACTCCCTCCTCATCTCACACCCCAAAGCCTCTGCCTTTAATCCATCCAGATTCCCAAATCCCAGTTTCAAATTCCATTCCACAAACCAAATCCCCCAGACCCATCTGAGGATCATGTCCCAGAAACCCTCTCAGGTTTTGGGTGGGAAAGTTGAAGTTGGGGAGACCCAGGAGGGAGTTTCCGAAAGACCCATGATTGATTTTCATGGGATTGATGAGGGGCTGGTGGAGAAGATGGTGTATGATGCTCTTGTTTGGAGCTCTCTTCATGGGCTTCTTGTTGGTGACAAGTCTGTTCAGAGATCAGGAAAAGTACCTGGTGTAGGCATGGTACATGCACCGTTTGCTTTATTTCCGATGCCATTTCCAGAAAGCCATTGGAAGCAAGCATATGAGTTAGCCCCCATATTTAATGAACTTGTCGATCGAGTGAGTTTGGATGCAAAGTTTCTGCAGGATTCACTGTCCAGAACAAAGAAAGTGGATGCTTTTACATCTAGACTTCTAGATATTCATTCCAAGATGCTAGAGATTAACAAGAAAGAGGACATACGCTTGGGTTTACATCGCTCAGATTATATGCTTGATGAAGAAACTAAACAACTCCTTCAAATAGAGATGAACACAATTTCAGCTTCATTTCCGGGACTCGGTTGTCTTGTTAGCGACCTTCACAGGGGTGGCCAAGAAGTTGCAATTGTTTATTTCAGAGTTGGGTATGCACCAATCCATTATCCTTCTGAATCAGTAAGCAAGTCTTACACTTTCCTGCTACTCAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

278

Amino Acids

31.09

Weight (kDa)

6.9

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	702
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	3 cut(s)	46, 363, 381
AfiI	CCNNNNNNNGG	4 cut(s)	156, 371, 698, 724
AgsI	TTSAA	3 cut(s)	118, 203, 659
AjnI	CCWGG	2 cut(s)	216, 364
AleI	CACNNNNGTG	1 cut(s)	726
AluBI	AGCT	2 cut(s)	309, 683
AluI	AGCT	2 cut(s)	309, 683
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	730
ApoI	RAATTY	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	311
BccI	CCATC	3 cut(s)	100, 159, 277
BciT130I	CCWGG	2 cut(s)	218, 366
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	546, 554, 575
BfmI	CTRYAG	1 cut(s)	500
Bme1390I	CCNGG	3 cut(s)	218, 366, 693
BmrFI	CCNGG	3 cut(s)	218, 366, 693
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	283, 396, 478, 523, 561
BmuI	ACTGGG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 371, 698, 724
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	218, 366
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	92, 493, 538
BseLI	CCNNNNNNNGG	4 cut(s)	156, 371, 698, 724
BseMII	CTCAG	3 cut(s)	146, 194, 633
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	732
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	2 cut(s)	151, 708
BslI	CCNNNNNNNGG	4 cut(s)	156, 371, 698, 724
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	151, 708
BsnI	GGCC	1 cut(s)	732
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	8, 311
Bsp143I	GATC	3 cut(s)	159, 350, 472
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	3 cut(s)	147, 193, 632
BspMAI	CTGCAG	1 cut(s)	504
BspPI	GGATC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	159, 350, 472
Bst2UI	CCWGG	2 cut(s)	218, 366
Bst4CI	ACNGT	2 cut(s)	390, 513
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	155, 180, 619
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	92, 493, 538
BstKTI	GATC	3 cut(s)	162, 353, 475
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	159, 350, 472
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	2 cut(s)	218, 366
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	3 cut(s)	216, 364, 691
BstSFI	CTRYAG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	92, 493, 538
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	435
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	45, 362, 380
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	7 cut(s)	21, 163, 241, 254, 317, 376, 383
CviJI	RGCY	8 cut(s)	77, 271, 309, 322, 423, 449, 683, 732
CviKI_1	RGCY	8 cut(s)	77, 271, 309, 322, 423, 449, 683, 732
CviQI	GTAC	3 cut(s)	45, 362, 380
DdeI	CTNAG	3 cut(s)	155, 180, 619
DpnI	GATC	3 cut(s)	161, 352, 474
DpnII	GATC	3 cut(s)	159, 350, 472
DrdI	GACNNNNNNGTC	1 cut(s)	702
DseDI	GACNNNNNNGTC	1 cut(s)	702
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	216, 364
EcoT38I	GRGCYC	1 cut(s)	311
FaeI	CATG	7 cut(s)	24, 166, 244, 257, 320, 379, 386
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	2 cut(s)	151, 708
FatI	CATG	7 cut(s)	20, 162, 240, 253, 316, 375, 382
FauNDI	CATATG	1 cut(s)	439
FokI	GGATG	3 cut(s)	79, 500, 545
FriOI	GRGCYC	1 cut(s)	311
FspBI	CTAG	3 cut(s)	546, 554, 575
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	1 cut(s)	692
Hin1II	CATG	7 cut(s)	24, 166, 244, 257, 320, 379, 386
HinfI	GANTC	4 cut(s)	99, 506, 696, 791
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	7 cut(s)	156, 232, 348, 405, 622, 758, 790
Hpy188III	TCNNGA	6 cut(s)	96, 354, 416, 516, 546, 554
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	665, 728, 795
HpyCH4III	ACNGT	2 cut(s)	390, 513
HpyCH4V	TGCA	5 cut(s)	386, 491, 502, 743, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	3 cut(s)	155, 180, 619
Hsp92II	CATG	7 cut(s)	24, 166, 244, 257, 320, 379, 386
Kzo9I	GATC	3 cut(s)	159, 350, 472
LmnI	GCTCC	1 cut(s)	306
LweI	GCATC	5 cut(s)	283, 396, 478, 523, 561
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	3 cut(s)	546, 554, 575
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	161, 352, 474
MboI	GATC	3 cut(s)	159, 350, 472
MboII	GAAGA	4 cut(s)	9, 292, 305, 650
MfeI	CAATTG	1 cut(s)	744
MhlI	GDGCHC	2 cut(s)	8, 311
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	3 cut(s)	119, 675, 744
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	65, 68, 88, 150, 187, 214, 259, 586
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	3 cut(s)	87, 459, 582
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	3 cut(s)	218, 366, 693
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	218, 366
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	3 cut(s)	159, 350, 472
NlaIII	CATG	7 cut(s)	24, 166, 244, 257, 320, 379, 386
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	99, 506, 791
PfoI	TCCNGGA	1 cut(s)	691
Ple19I	CGATCG	1 cut(s)	475
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	216, 364
PspGI	CCWGG	2 cut(s)	216, 364
PstI	CTGCAG	1 cut(s)	504
PvuI	CGATCG	1 cut(s)	475
RsaI	GTAC	3 cut(s)	46, 363, 381
RsaNI	GTAC	3 cut(s)	45, 362, 380
RseI	CAYNNNNRTG	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	87, 459, 582
Sau3AI	GATC	3 cut(s)	159, 350, 472
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	218, 366, 693
SduI	GDGCHC	2 cut(s)	8, 311
SetI	ASST	5 cut(s)	186, 311, 367, 685, 720
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	5 cut(s)	283, 396, 478, 523, 561
SfcI	CTRYAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	726
Sse9I	AATT	3 cut(s)	119, 675, 744
SspMI	CTAG	3 cut(s)	546, 554, 575
SstI	GAGCTC	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	216, 364, 691
TaaI	ACNGT	2 cut(s)	390, 513
TaqI	TCGA	2 cut(s)	471, 475
TasI	AATT	3 cut(s)	119, 675, 744
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	99, 506, 791
Tru1I	TTAA	3 cut(s)	87, 459, 582
Tru9I	TTAA	3 cut(s)	87, 459, 582
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	9 cut(s)	9, 17, 242, 305, 477, 551, 651, 675, 683
TspRI	CASTG	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	2 cut(s)	545, 553
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XspI	CTAG	3 cut(s)	546, 554, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.