Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

79477412 .. 79478619

Gene Structure 1208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG619800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCTCAACCCTCTCAAGTTTTGCGTGCCAATGGTGGCAAAGTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGACAAGATGGTGTATGATGCTCTTATTTGGAGCTCAAATCATGGCCTTGTTGTTGGTGACAGGTCTGTTCAGAGGTCATCAACAATACCTGGAGTAGGAATGGGCTCAGTGGTCTTGTCTGCCAACTTCACAGGAGCTTACTTGGTAACTATGGAGAATTTCTTGGATTGGATCCTAAAAGGATTCCTAATTAATAATGTTGCAATCAGTCAGTTTTCAGCGGCTTTGGCCAGAACTTGGACTAAATACAACAACCCTAGGGCCGCAGTTCTATTTGTAGTTCAGGCTGAAGAACGCAACATGTATGACCAACATTGGCTCTCTACTTCATTGAAGCAAAAATATAACATATCAACTCTTCGAAAAACTTTAGCTGAAATTGACGCTGAGGCGGAGTTTCTACCAGATGGAACATTTGTTGTTGGCGGCCAAGTAATTGGAATAGTTTATTTCAGAGCTGGGTATACCCCAACTGATTATCCTTCTGAATCAAAGTGGAGAGCTAGGTTACTTATGGAGCAATCATCCGCCATCAAGTGTCCATCAATATCTTATCATGTAGCTGGAACAAAAAAAATTCGACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGGTTCCTTGATGATAAAGAAGACATTGCAAAATTGCGGAAATGCTTTGTAGGATTGTGGAGTTTGGATGACTCAGAAATTGTTAGAAAAAGCAATGGAAAAGCCAGAGTTATTTGTCATGAAGCCCCAAAGAGAAGGCGGAGGGAACAATATCTATGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

297

Amino Acids

33.45

Weight (kDa)

9.23

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	102 - 277	7.6e-18	Eukaryotic glutathione synthase, ATP binding domain
GSH_synthase	PF03199	128 - 227	3.2e-33	Eukaryotic glutathione synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	581
AciI	CCGC	7 cut(s)	338, 381, 509, 543, 645, 766, 868
AclWI	GGATC	2 cut(s)	283, 296
AcoI	YGGCCR	2 cut(s)	345, 544
AcsI	RAATTY	2 cut(s)	274, 693
AcuI	CTGAAG	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	212, 354
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	60, 205
AluBI	AGCT	7 cut(s)	50, 150, 254, 491, 575, 620, 680
AluI	AGCT	7 cut(s)	50, 150, 254, 491, 575, 620, 680
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	9, 50
AlwI	GGATC	2 cut(s)	283, 296
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	5 cut(s)	80, 160, 345, 378, 544
ApoI	RAATTY	2 cut(s)	274, 693
AseI	ATTAAT	2 cut(s)	87, 309
AspA2I	CCTAGG	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	725
AvrII	CCTAGG	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	152, 224
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	504
BccI	CCATC	5 cut(s)	89, 118, 518, 656, 667
BciT130I	CCWGG	2 cut(s)	62, 207
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	9, 50
BfaI	CTAG	3 cut(s)	51, 375, 621
BisI	GCNGC	3 cut(s)	339, 381, 544
BlnI	CCTAGG	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	3 cut(s)	340, 382, 545
Bme1390I	CCNGG	2 cut(s)	62, 207
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	290, 734
BmrFI	CCNGG	2 cut(s)	62, 207
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	60, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 354
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	2 cut(s)	753, 829
BseBI	CCWGG	2 cut(s)	62, 207
BseDI	CCNNGG	2 cut(s)	60, 374
BseGI	GGATG	3 cut(s)	70, 641, 802
BseLI	CCNNNNNNNGG	2 cut(s)	212, 354
BseMI	GCAATG	2 cut(s)	753, 829
BseMII	CTCAG	3 cut(s)	237, 495, 816
BseNI	ACTGG	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	575
BshFI	GGCC	5 cut(s)	82, 162, 347, 380, 546
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	725
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	212, 354
BsmAI	GTCTC	2 cut(s)	9, 50
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	5 cut(s)	82, 162, 347, 380, 546
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	725
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	2 cut(s)	152, 224
Bsp143I	GATC	2 cut(s)	103, 288
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	7 cut(s)	338, 381, 509, 543, 645, 766, 868
BspANI	GGCC	5 cut(s)	82, 162, 347, 380, 546
BspCNI	CTCAG	3 cut(s)	236, 496, 815
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	290, 734
BspPI	GGATC	2 cut(s)	283, 296
BspT104I	TTCGAA	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	2 cut(s)	753, 829
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	60, 374
BssMI	GATC	2 cut(s)	103, 288
BssNAI	GTATAC	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	374
Bst1107I	GTATAC	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	62, 207
Bst6I	CTCTTC	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	223, 504, 711, 802
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	70, 641, 802
BstKTI	GATC	2 cut(s)	106, 291
BstMAI	GTCTC	2 cut(s)	9, 50
BstMBI	GATC	2 cut(s)	103, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	62, 207
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	60, 205
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	288
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	82, 162, 347, 380, 546
BtsCI	GGATG	3 cut(s)	70, 641, 802
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	509
CviAII	CATG	4 cut(s)	158, 418, 674, 848
DdeI	CTNAG	4 cut(s)	223, 504, 711, 802
DpnI	GATC	2 cut(s)	105, 290
DpnII	GATC	2 cut(s)	103, 288
EaeI	YGGCCR	2 cut(s)	345, 544
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	3 cut(s)	524, 634, 883
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	374
Eco24I	GRGCYC	2 cut(s)	152, 224
Eco31I	GGTCTC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	60, 205
EcoT14I	CCWWGG	1 cut(s)	374
EcoT38I	GRGCYC	2 cut(s)	152, 224
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	161, 421, 677, 851
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	157, 417, 673, 847
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	3 cut(s)	339, 381, 544
FokI	GGATG	3 cut(s)	77, 628, 809
FriOI	GRGCYC	2 cut(s)	152, 224
Fsp4HI	GCNGC	3 cut(s)	339, 381, 544
FspBI	CTAG	3 cut(s)	51, 375, 621
GluI	GCNGC	3 cut(s)	339, 381, 544
GsaI	CCCAGC	1 cut(s)	579
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	5 cut(s)	82, 162, 347, 380, 546
HgaI	GACGC	1 cut(s)	509
Hin1II	CATG	4 cut(s)	161, 421, 677, 851
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	300, 605, 800
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	118, 582
Hpy188I	TCNGA	4 cut(s)	189, 572, 604, 805
Hpy188III	TCNNGA	3 cut(s)	725, 727, 848
Hpy8I	GTNNAC	2 cut(s)	118, 582
HpyAV	CCTTC	2 cut(s)	609, 858
HpyCH4V	TGCA	2 cut(s)	320, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	4 cut(s)	223, 504, 711, 802
Hsp92II	CATG	4 cut(s)	161, 421, 677, 851
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	103, 288
LmnI	GCTCC	3 cut(s)	147, 251, 634
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	3 cut(s)	51, 375, 621
MaeIII	GTNAC	3 cut(s)	173, 262, 624
MalI	GATC	2 cut(s)	105, 290
MboI	GATC	2 cut(s)	103, 288
MboII	GAAGA	3 cut(s)	419, 467, 761
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	152, 224
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	8 cut(s)	84, 274, 306, 495, 552, 693, 761, 807
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	794
MnlI	CCTC	5 cut(s)	22, 183, 499, 723, 864
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	2 cut(s)	87, 309
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	62, 207
MvaI	CCWGG	2 cut(s)	62, 207
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	2 cut(s)	103, 288
NlaIII	CATG	4 cut(s)	161, 421, 677, 851
NlaIV	GGNNCC	2 cut(s)	290, 734
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	725
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	300, 605
PflMI	CCANNNNNTGG	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	340, 382, 545
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PscI	ACATGT	1 cut(s)	417
PshBI	ATTAAT	2 cut(s)	87, 309
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	60, 205
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	2 cut(s)	60, 205
PspN4I	GGNNCC	2 cut(s)	290, 734
PspPI	GGNCC	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	87, 309
SatI	GCNGC	3 cut(s)	339, 381, 544
Sau3AI	GATC	2 cut(s)	103, 288
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	2 cut(s)	62, 207
SduI	GDGCHC	2 cut(s)	152, 224
SfaNI	GCATC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	725
SfuI	TTCGAA	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	15, 725
SmoI	CTYRAG	2 cut(s)	15, 725
Sse9I	AATT	8 cut(s)	84, 274, 306, 495, 552, 693, 761, 807
SsiI	CCGC	7 cut(s)	338, 381, 509, 543, 645, 766, 868
SspMI	CTAG	3 cut(s)	51, 375, 621
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	60, 205
StyI	CCWWGG	1 cut(s)	374
TaqI	TCGA	3 cut(s)	478, 697, 726
TasI	AATT	8 cut(s)	84, 274, 306, 495, 552, 693, 761, 807
TauI	GCSGC	3 cut(s)	341, 383, 546
TfiI	GAWTC	2 cut(s)	300, 605
Tru1I	TTAA	2 cut(s)	87, 309
Tru9I	TTAA	2 cut(s)	87, 309
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	81, 435, 864
TspRI	CASTG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	354
VspI	ATTAAT	2 cut(s)	87, 309
XagI	CCTNNNNNAGG	1 cut(s)	210
XapI	RAATTY	2 cut(s)	274, 693
XceI	RCATGY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	725
XmaJI	CCTAGG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	581
XspI	CTAG	3 cut(s)	51, 375, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.