Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019265.1

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3748

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019265.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1085 bp

atgggtgctacacattccatccctctcaccactgataccatcacccttcttcactcaaatcccagaacaaccttgttttctcagtcaacacagtcgagattacaaaacccagtattcaaatcaaaccccaccaaccaaatcttcaaggcccagttgaagaccatgtctcaaccctctcaagttgtgcctgtcaatggtggcaaacttgtagttagggagacccaagatgaaagtagtacatggccaattaatgttgatgggattgatcaggaagtggttgacaagatggtatatgatgctcttgtttggagctcaattcatggccttgttgttggtgacaggtctgttcagaggtcatcaacagtacctggagtaggattggtacacgccccgttcgctttacttccgatgccgtttccagcaactcagttgaatcaagcgaatgagttagcccccatattcaatgaacttgttgatcgagtgagtttggatgcggaattcctgcaggattcattgtccagaacgaagaaagcagatccttttacatctagacttctagatattcatgccaagatgctagagattaacaagaaagaggagatacgcttgggtttacatcggtcagattatatgcttgatgaacaaactaaattactccttcaaatagagatgaacacaatttcatcttcatttgcaggcctcagtggtcttgtcggcaaacttcacaggagcttacttagtaactatggagaatttcttggattagattccaaaaggattcctgataatgctgcagtcagtcaattttcaatggctttggctagagcttggactgaatacaacaaccccagggcggtagttctgtttgtggttcaggctgaagaacgcaacatgggtggccaagtaattggaatagtttatttcagagctgggtataccccaaatgattatccttctgaagcagagtggagagctaggttacttatggagcagtcgtctgccatcaagtgcccatcaatatcttatcatctagtagggacgaaaaaggttcaacaggaacttgccaagcctaatgttcttgagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

361

Amino Acids

40.12

Weight (kDa)

6.47

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	935
AciI	CCGC	2 cut(s)	494, 854
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	2 cut(s)	242, 898
AcsI	RAATTY	2 cut(s)	497, 752
AcuI	CTGAAG	2 cut(s)	900, 978
AfaI	GTAC	3 cut(s)	238, 366, 384
AfiI	CCNNNNNNNGG	3 cut(s)	194, 374, 853
AgsI	TTSAA	8 cut(s)	118, 145, 157, 433, 463, 662, 810, 1052
AjnI	CCWGG	2 cut(s)	367, 848
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	5 cut(s)	312, 732, 827, 929, 974
AluI	AGCT	5 cut(s)	312, 732, 827, 929, 974
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	171, 212
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	5 cut(s)	147, 242, 322, 697, 898
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	497, 752
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	19, 34, 347
BaeGI	GKGCMC	1 cut(s)	1013
BalI	TGGCCA	2 cut(s)	244, 900
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	6 cut(s)	26, 47, 251, 280, 1010, 1021
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	369, 850
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	171, 212
BfaI	CTAG	6 cut(s)	549, 557, 578, 822, 975, 1031
BfmI	CTRYAG	2 cut(s)	503, 792
BisI	GCNGC	1 cut(s)	792
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	369, 850
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	369, 850
BmrI	ACTGGG	2 cut(s)	104, 145
BmsI	GCATC	4 cut(s)	286, 399, 481, 564
BmuI	ACTGGG	2 cut(s)	104, 145
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	848, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	980, 1010
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 374, 853
Bse1I	ACTGG	2 cut(s)	110, 151
BseBI	CCWGG	2 cut(s)	369, 850
BseDI	CCNNGG	2 cut(s)	848, 849
BseGI	GGATG	2 cut(s)	18, 496
BseLI	CCNNNNNNNGG	3 cut(s)	194, 374, 853
BseMII	CTCAG	3 cut(s)	95, 440, 715
BseNI	ACTGG	2 cut(s)	110, 151
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	1013
BseXI	GCAGC	1 cut(s)	778
BseYI	CCCAGC	1 cut(s)	929
BshFI	GGCC	5 cut(s)	149, 244, 324, 699, 900
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	1051
BslI	CCNNNNNNNGG	3 cut(s)	194, 374, 853
BsmAI	GTCTC	2 cut(s)	171, 212
BsmFI	GGGAC	1 cut(s)	1051
BsnI	GGCC	5 cut(s)	149, 244, 324, 699, 900
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	314, 1013
Bsp143I	GATC	3 cut(s)	265, 475, 535
BspACI	CCGC	2 cut(s)	494, 854
BspANI	GGCC	5 cut(s)	149, 244, 324, 699, 900
BspCNI	CTCAG	3 cut(s)	94, 439, 714
BspMAI	CTGCAG	2 cut(s)	507, 796
BspPI	GGATC	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	110, 151
BssECI	CCNNGG	2 cut(s)	848, 849
BssMI	GATC	3 cut(s)	265, 475, 535
BssNAI	GTATAC	1 cut(s)	936
Bst1107I	GTATAC	1 cut(s)	936
Bst2UI	CCWGG	2 cut(s)	369, 850
Bst4CI	ACNGT	2 cut(s)	93, 364
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	4 cut(s)	81, 426, 701, 737
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	18, 496
BstKTI	GATC	3 cut(s)	268, 478, 538
BstMAI	GTCTC	2 cut(s)	171, 212
BstMBI	GATC	3 cut(s)	265, 475, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	2 cut(s)	369, 850
BstSCI	CCNGG	2 cut(s)	367, 848
BstSFI	CTRYAG	2 cut(s)	503, 792
BstSLI	GKGCMC	1 cut(s)	1013
BstV1I	GCAGC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	1 cut(s)	936
BsuRI	GGCC	5 cut(s)	149, 244, 324, 699, 900
BtsCI	GGATG	2 cut(s)	18, 496
BtsIMutI	CAGTG	2 cut(s)	30, 709
Cac8I	GCNNGC	1 cut(s)	697
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	237, 365, 383
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	5 cut(s)	163, 240, 320, 566, 892
CviQI	GTAC	3 cut(s)	237, 365, 383
DdeI	CTNAG	4 cut(s)	81, 426, 701, 737
DpnI	GATC	3 cut(s)	267, 477, 537
DpnII	GATC	3 cut(s)	265, 475, 535
EaeI	YGGCCR	2 cut(s)	242, 898
Ecl136II	GAGCTC	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	2 cut(s)	900, 978
EcoICRI	GAGCTC	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	367, 848
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	5 cut(s)	166, 243, 323, 569, 895
FaqI	GGGAC	1 cut(s)	1051
FatI	CATG	5 cut(s)	162, 239, 319, 565, 891
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	935
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	2 cut(s)	5, 503
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	6 cut(s)	549, 557, 578, 822, 975, 1031
GluI	GCNGC	1 cut(s)	792
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	5 cut(s)	149, 244, 324, 699, 900
Hin1II	CATG	5 cut(s)	166, 243, 323, 569, 895
HincII	GTYRAC	2 cut(s)	87, 280
HindII	GTYRAC	2 cut(s)	87, 280
HinfI	GANTC	4 cut(s)	433, 509, 767, 778
HphI	GGTGA	3 cut(s)	19, 34, 347
Hpy166II	GTNNAC	5 cut(s)	87, 280, 385, 614, 936
Hpy188I	TCNGA	5 cut(s)	351, 408, 625, 926, 958
Hpy188III	TCNNGA	7 cut(s)	96, 269, 519, 549, 557, 782, 1079
Hpy8I	GTNNAC	5 cut(s)	87, 280, 385, 614, 936
HpyAV	CCTTC	3 cut(s)	56, 668, 963
HpyCH4III	ACNGT	2 cut(s)	93, 364
HpyCH4V	TGCA	3 cut(s)	505, 695, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	4 cut(s)	81, 426, 701, 737
Hsp92II	CATG	5 cut(s)	166, 243, 323, 569, 895
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	265, 475, 535
LmnI	GCTCC	3 cut(s)	309, 729, 988
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	4 cut(s)	286, 399, 481, 564
MaeI	CTAG	6 cut(s)	549, 557, 578, 822, 975, 1031
MaeIII	GTNAC	3 cut(s)	335, 740, 978
MalI	GATC	3 cut(s)	267, 477, 537
MboI	GATC	3 cut(s)	265, 475, 535
MboII	GAAGA	6 cut(s)	41, 133, 169, 538, 678, 893
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	314, 1013
MlsI	TGGCCA	2 cut(s)	244, 900
MluCI	AATT	8 cut(s)	246, 315, 497, 650, 678, 752, 803, 906
MluNI	TGGCCA	2 cut(s)	244, 900
MnlI	CCTC	5 cut(s)	33, 184, 345, 589, 710
Mox20I	TGGCCA	2 cut(s)	244, 900
MscI	TGGCCA	2 cut(s)	244, 900
MseI	TTAA	2 cut(s)	249, 585
Msp20I	TGGCCA	2 cut(s)	244, 900
MspR9I	CCNGG	2 cut(s)	369, 850
MvaI	CCWGG	2 cut(s)	369, 850
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeII	GATC	3 cut(s)	265, 475, 535
NlaIII	CATG	5 cut(s)	166, 243, 323, 569, 895
NmuCI	GTSAC	1 cut(s)	335
PasI	CCCWGGG	1 cut(s)	849
PceI	AGGCCT	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	433, 509, 767, 778
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	793
PshBI	ATTAAT	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	367, 848
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	2 cut(s)	367, 848
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	507, 796
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	163
RsaI	GTAC	3 cut(s)	238, 366, 384
RsaNI	GTAC	3 cut(s)	237, 365, 383
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	249, 585
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	3 cut(s)	265, 475, 535
Sau96I	GGNCC	1 cut(s)	148
SbfI	CCTGCAGG	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	369, 850
SdaI	CCTGCAGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	314, 1013
SfaNI	GCATC	4 cut(s)	286, 399, 481, 564
SfcI	CTRYAG	2 cut(s)	503, 792
SmlI	CTYRAG	2 cut(s)	177, 1079
SmoI	CTYRAG	2 cut(s)	177, 1079
Sse8387I	CCTGCAGG	1 cut(s)	507
Sse9I	AATT	8 cut(s)	246, 315, 497, 650, 678, 752, 803, 906
SseBI	AGGCCT	1 cut(s)	699
SsiI	CCGC	2 cut(s)	494, 854
SspMI	CTAG	6 cut(s)	549, 557, 578, 822, 975, 1031
SstI	GAGCTC	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	367, 848
TaaI	ACNGT	2 cut(s)	93, 364
TaqI	TCGA	2 cut(s)	95, 478
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	8 cut(s)	246, 315, 497, 650, 678, 752, 803, 906
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	4 cut(s)	433, 509, 767, 778
Tru1I	TTAA	2 cut(s)	249, 585
Tru9I	TTAA	2 cut(s)	249, 585
TscAI	CASTG	2 cut(s)	37, 709
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	9 cut(s)	243, 308, 480, 501, 554, 654, 672, 678, 686
TspRI	CASTG	2 cut(s)	37, 709
Tth111I	GACNNNGTC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	2 cut(s)	497, 752
XbaI	TCTAGA	2 cut(s)	548, 556
XmiI	GTMKAC	1 cut(s)	935
XspI	CTAG	6 cut(s)	549, 557, 578, 822, 975, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.